BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00007694
         (4000 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I sub...  1791   0.0  
ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub...  1760   0.0  
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub...  1743   0.0  
ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymer...  1737   0.0  
emb|CBI35100.3| unnamed protein product [Vitis vinifera]             1727   0.0  
ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymer...  1709   0.0  
ref|XP_007010837.1| Nuclear RNA polymerase A2 isoform 2 [Theobro...  1705   0.0  
ref|XP_007133696.1| hypothetical protein PHAVU_011G201300g [Phas...  1704   0.0  
ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymer...  1694   0.0  
ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putat...  1686   0.0  
ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I sub...  1685   0.0  
ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymer...  1684   0.0  
ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I sub...  1653   0.0  
ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I sub...  1643   0.0  
ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I sub...  1640   0.0  
ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citr...  1616   0.0  
ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutr...  1600   0.0  
ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arab...  1561   0.0  
ref|XP_006306612.1| hypothetical protein CARUB_v10008127mg [Caps...  1560   0.0  
ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana...  1559   0.0  

>ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
            vinifera]
          Length = 1142

 Score = 1791 bits (4639), Expect = 0.0
 Identities = 884/1166 (75%), Positives = 1006/1166 (86%), Gaps = 1/1166 (0%)
 Frame = -2

Query: 3951 PNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQK 3772
            P+ E LRELF+ HI+SFD+LVE G++TLL++++P                          
Sbjct: 6    PDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKP-------------------------- 39

Query: 3771 DRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICH 3592
             R  +T R AL+P+ECRQA  +Y+GK L +VCFQYGN  AI+EKF  G  PIMLKSK+CH
Sbjct: 40   -RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCH 98

Query: 3591 LRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTD 3412
            LRGA   +L+S KEES+EMGGYFILNGLER+VRLLI+ KRNYP+S++R SFR+R+EG+TD
Sbjct: 99   LRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTD 158

Query: 3411 KAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYAS 3232
            KAV IRCVR+DQS+V  +LYYL+NGSARLGFWI+G+E+LLPVGV LKALIDT D EIY S
Sbjct: 159  KAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYES 218

Query: 3231 LTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLET 3052
            LTC Y E+++GGKGAVGTQLVGERV+IILDEVRDLSL T  QCLQHIGE+FQ VMDGLE 
Sbjct: 219  LTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLEN 278

Query: 3051 KSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLP 2872
            +S+S V  +VL++YIFVHL NN DKFNLLIFM+QKLF+L+D T+ PDN D LQNQEVLLP
Sbjct: 279  ESYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLP 338

Query: 2871 GHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVEN 2692
            GHLITIYLKEKLQEWLYKARRLLQDE+ K+ K+F+F SL H+KKV+DKNPS+ + +AVEN
Sbjct: 339  GHLITIYLKEKLQEWLYKARRLLQDEINKR-KNFEFSSLAHVKKVMDKNPSRQISLAVEN 397

Query: 2691 MLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPE 2512
            MLKTGRL+TQSGLDLQQ  GMTV AERLNFLRF+SHFR+VHRGASFAG R TSVRKLLPE
Sbjct: 398  MLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPE 457

Query: 2511 AWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPS 2332
            AWGFLCPVHTPDGEPCGLLNHM STCRITS+FDS+G  +D  K+R+SILSVL GIGMTP+
Sbjct: 458  AWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPA 517

Query: 2331 LPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLS 2152
            LPK+V+AGPPEVLSV+LDG V+GSI S  VE AV+HLRRLK+S IS IP+DLEVGY+PLS
Sbjct: 518  LPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLS 577

Query: 2151 FGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDG 1972
             GGAYPGLYLFTSPSRF+RPVRNIS+PS+   +IELIGPFEQ YMEIRCPDG +GGRR+ 
Sbjct: 578  MGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNI 637

Query: 1971 FPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYH 1792
            FPATHEEIHPTG+LSVVA+LTP+SDHNQSPRNMYQCQM KQTMAFSSQAI  RADQKLYH
Sbjct: 638  FPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYH 697

Query: 1791 LQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTI 1612
            LQTPQTPIVRT+AY +Y++DEFPTGTNAIVAVLAY+GYDMEDAMILNKSSV+RG+ HG I
Sbjct: 698  LQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQI 757

Query: 1611 YQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTV 1432
            YQ E IDL D+   SD+ QR+F RSN DKS +S ID+DGLPYVGQM+ PNEPY S +N V
Sbjct: 758  YQTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEV 817

Query: 1431 NNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVC 1252
             ++T+   LKGSE VIVDYVA+D +NK K PQKVNIRFRRPRNP+IGDKFSSRHGQKGVC
Sbjct: 818  TSSTRATKLKGSEPVIVDYVALDAKNK-KHPQKVNIRFRRPRNPIIGDKFSSRHGQKGVC 876

Query: 1251 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPG 1072
            SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+GK+VDATPF  
Sbjct: 877  SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSD 936

Query: 1071 AVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRL 895
            +++KA GE  S S S VDELG +L SYGFNYHG+EVLYSG  GTELTCEIFIGPVYYQRL
Sbjct: 937  SLRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRL 996

Query: 894  RHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCS 715
            RHMVSDKFQVRSTGTVDQVTRQP          RFGEMERD+MLAHGAAYLLHDRLHTCS
Sbjct: 997  RHMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCS 1056

Query: 714  DHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPY 535
            DHHIADVCSLCGSILTT+IIQP K+AVREIGGLPPG  PKKVTCHAC+TSKGMETV+MPY
Sbjct: 1057 DHHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQTSKGMETVSMPY 1116

Query: 534  VFKYLAAELAAMNVKMTLQLSNGAGA 457
            +F++LAAELAAMN+KMTLQLSNGAGA
Sbjct: 1117 IFRFLAAELAAMNIKMTLQLSNGAGA 1142


>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
            sativus]
          Length = 1173

 Score = 1760 bits (4559), Expect = 0.0
 Identities = 858/1168 (73%), Positives = 992/1168 (84%), Gaps = 2/1168 (0%)
 Frame = -2

Query: 3960 ENQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYP 3781
            EN+ + E+LRELF+ HIESFD+LV++G++TL+ +I+PVEIYD FT K LRI  G  ELYP
Sbjct: 7    ENE-DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYP 65

Query: 3780 PQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSK 3601
            PQK+R  +T R AL PYECRQA  +Y GKF+ +VCFQY     I+EKF FG  PIMLKSK
Sbjct: 66   PQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSK 125

Query: 3600 ICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEG 3421
            +CHLRG    +L+SY EE++EMGGYF++NGLER+VRLLI  KRNYP S++R SF +R+EG
Sbjct: 126  LCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREG 185

Query: 3420 FTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEI 3241
            +TDKAV IRCVR+DQSSV  +LYYL+NGSARLGFW++GKE+LLP+GV LKALIDT D EI
Sbjct: 186  YTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEI 245

Query: 3240 YASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDG 3061
            YASLT  Y ++H   KGAVGTQLVGER +IILDEVRDL+L  H QCL HIG++FQPVM+G
Sbjct: 246  YASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEG 305

Query: 3060 LETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEV 2881
            L  +  S V  +VLKDYIFVHL NN DKFNLLIFM QKLF+L+D T+ PDN D+LQNQ+V
Sbjct: 306  LGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDV 365

Query: 2880 LLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMA 2701
            LLPG LIT+YLKEKL++WL K ++LL+DE+    K+F+F SL H+KKV+DKNPSK V  A
Sbjct: 366  LLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSA 425

Query: 2700 VENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKL 2521
            VENMLKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+SHFR+VHRGASFAG R T+VRKL
Sbjct: 426  VENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKL 485

Query: 2520 LPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGM 2341
            LPE+WGFLCPVHTPDGEPCGLLNH+TSTCRITS F+SQG V+D  K+R SILSVL  +GM
Sbjct: 486  LPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGM 545

Query: 2340 TPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYV 2161
             PSLPK+V+ G P+ L+VLLDG ++G ISS  VEK V+HLRRLK+     IP+DLEVGYV
Sbjct: 546  IPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYV 605

Query: 2160 PLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGR 1981
            PLS  GAYPGLYLFTSPSRF+RPV+N+S+  + + NIELIGPFEQ +MEIRCPDGG+GGR
Sbjct: 606  PLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGR 665

Query: 1980 RDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQK 1801
            +D FPATHEEIHPTG+LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAFS QAI++RADQK
Sbjct: 666  KDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQK 725

Query: 1800 LYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFH 1621
            LYHLQTPQTPIVRT+ Y +YNIDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFH
Sbjct: 726  LYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFH 785

Query: 1620 GTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTH 1441
            G IYQ E IDL DQ   S ++Q++F RSN D S  S IDADGLPYVGQM++P+EPY S +
Sbjct: 786  GQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIY 845

Query: 1440 NTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQK 1261
            + V  TT+T  LKGSE VIVDYV+VD +NK   PQKVNIRFRRPRNP+IGDKFSSRHGQK
Sbjct: 846  DEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNN-PQKVNIRFRRPRNPMIGDKFSSRHGQK 904

Query: 1260 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATP 1081
            GVCSQLWPD+DMPF G TGMRPDLIINPHAFPSRMTI ML+ES+AAKGG LNG++V+ATP
Sbjct: 905  GVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATP 964

Query: 1080 FPGAVKK--AGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVY 907
            F  +V K  AG+E +  ++ VDELG  L   GFNYHGLEVLYSGV GTELTCEIFIGPVY
Sbjct: 965  FRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVY 1024

Query: 906  YQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRL 727
            YQRLRHMVSDK+QVRSTGTVDQVTRQP          RFGEMERD+MLAHGA+YLLHDRL
Sbjct: 1025 YQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRL 1084

Query: 726  HTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETV 547
            HTCSDHHIADVCSLCGS+LT++ +QPPK+AVREIGGLPPG  PK+VTCHACKTSKGMETV
Sbjct: 1085 HTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETV 1144

Query: 546  AMPYVFKYLAAELAAMNVKMTLQLSNGA 463
            AMPYVFKYLAAELAAMN+KMTLQLS+GA
Sbjct: 1145 AMPYVFKYLAAELAAMNIKMTLQLSSGA 1172


>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X1
            [Glycine max]
          Length = 1175

 Score = 1743 bits (4514), Expect = 0.0
 Identities = 856/1165 (73%), Positives = 987/1165 (84%), Gaps = 1/1165 (0%)
 Frame = -2

Query: 3951 PNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQK 3772
            P+ E+LRELFK HIESFDY+V++G+ T+L +I+PVE++D FT   LRI   +  LYPPQK
Sbjct: 9    PDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 3771 DRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICH 3592
            +R ++T R AL P+ECRQA  +Y+GK  ++VCFQY +   I+E   FG  PIML+SK+C+
Sbjct: 69   ERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCN 128

Query: 3591 LRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTD 3412
            LRGA   +L+SYKEE++EMGGYFILNGLER+VRLLI+ KRNYP+S++R SF +R+EG+TD
Sbjct: 129  LRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTD 188

Query: 3411 KAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYAS 3232
            KAV IRCVR DQSS++ RLYYL+NGSARLGFW+RG+E+LLPVG+ LKALIDT D EIY +
Sbjct: 189  KAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVN 248

Query: 3231 LTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLET 3052
            LT  Y E+++ GKGAVGTQLVGER +IILDE+RDLSL T LQCL++IGE+FQPVM+ L+ 
Sbjct: 249  LTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELKN 308

Query: 3051 KSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLP 2872
             S+  V  +VLKD I VHL NN DKFNLLIFMLQKLF+L+D T+ PDN D+LQN EVLLP
Sbjct: 309  DSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLP 368

Query: 2871 GHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVEN 2692
            GHLIT+YLKEKL++WL K RRLL DE+ KK K FDF  +V +KKV+DKN  K V  AVEN
Sbjct: 369  GHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVEN 428

Query: 2691 MLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPE 2512
            MLKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+SHFR+VHRGASFAG R T+VRKLLPE
Sbjct: 429  MLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 2511 AWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPS 2332
            +WGFLCPVHTPDGEPCGLLNHMT T RITSFFDSQG +KD  K+++SIL+VL  +GMTPS
Sbjct: 489  SWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPS 548

Query: 2331 LPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLS 2152
            LPKI   GPPE L+VLLDGCV+G I+S  VEK V+H+R LK+S ++ IP+D+EVGYVPLS
Sbjct: 549  LPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPLS 608

Query: 2151 FGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDG 1972
             GGAYPGLYL TSPSRF+RPVRNIS+ SDGS NIELIGPFEQ +MEIRCPDGG+GGR+  
Sbjct: 609  MGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRKSS 668

Query: 1971 FPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYH 1792
            FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAFSSQ IQ RADQKLYH
Sbjct: 669  FPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYH 728

Query: 1791 LQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTI 1612
            LQTPQTPIVRT+ Y +YNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG I
Sbjct: 729  LQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQI 788

Query: 1611 YQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTV 1432
            YQ E IDL +Q   SD++ R+F +SN +KS   SID+DGLP+VGQM+RP+EPY S +N V
Sbjct: 789  YQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEV 848

Query: 1431 NNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVC 1252
             ++  T   KGSE V VDYVA D +NK K  QKVNIRFR PRNPVIGDKFSSRHGQKGVC
Sbjct: 849  TSSIHTLKRKGSEAVYVDYVAADVKNK-KHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVC 907

Query: 1251 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPG 1072
            SQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL G++VDATPF  
Sbjct: 908  SQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRS 967

Query: 1071 AV-KKAGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRL 895
            +V K +GE  S S S VD+LG LL   GFNYHGLEVLYSGV GTELTCEIFIGPVYYQRL
Sbjct: 968  SVTKDSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRL 1027

Query: 894  RHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCS 715
            RHMVSDKFQVRSTGT+DQVTRQP          RFGEMERD++LAHGAAYLLHDRLHTCS
Sbjct: 1028 RHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1087

Query: 714  DHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPY 535
            D+HIADVCSLCGS+L TT IQP K+ VREIGGLPPG  PKKVTCHAC+TSKGMETVAMPY
Sbjct: 1088 DYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPY 1147

Query: 534  VFKYLAAELAAMNVKMTLQLSNGAG 460
            VF+YLAAELAAMN+KMTL+LS+GAG
Sbjct: 1148 VFRYLAAELAAMNIKMTLKLSDGAG 1172


>ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Glycine max]
          Length = 1175

 Score = 1737 bits (4499), Expect = 0.0
 Identities = 850/1166 (72%), Positives = 987/1166 (84%), Gaps = 1/1166 (0%)
 Frame = -2

Query: 3951 PNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQK 3772
            P+ E+LRELFK HIESFDY+ ++G++T+L +I+P+E++D FT   LRI   +  LYPPQK
Sbjct: 9    PDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 3771 DRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICH 3592
            +R ++T R AL P+ECRQA  +YAGK  ++VCFQY +   I+E   FG  PIML+SK+C+
Sbjct: 69   ERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPIMLQSKLCN 128

Query: 3591 LRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTD 3412
            LRGA   +L+SY+EE++EMGGYFILNGLER++RLLI+ KRN+P+S++R SF +R+EG+TD
Sbjct: 129  LRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYTD 188

Query: 3411 KAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYAS 3232
            KA+ IRCVR DQSS++ RLYYL+NGSARLGFW+RG+E+LLPVG+ LKALIDT D EIY +
Sbjct: 189  KAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVN 248

Query: 3231 LTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLET 3052
            LT  Y E+++ GKGAVGTQLVGER +IILDE+RDLSL T LQCL++IGE+FQPV+  L+ 
Sbjct: 249  LTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELKN 308

Query: 3051 KSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLP 2872
             S+  V  +VLKD I VHL NN DKFNLLIFMLQKLF+L+D T+ PDN D+LQN EVLLP
Sbjct: 309  DSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLP 368

Query: 2871 GHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVEN 2692
            GHLIT+YLKEKL++WL K +RLL DE+ KK K FDF  +V +KKV+DKN  K V  AVEN
Sbjct: 369  GHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVEN 428

Query: 2691 MLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPE 2512
            MLKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+SHFR+VHRGASFAG R T+VRKLLPE
Sbjct: 429  MLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 2511 AWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPS 2332
            +WGFLCPVHTPDGEPCGLLNHMT T RITSFFDSQG VKD  K+++SIL+VL  +GMTPS
Sbjct: 489  SWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTPS 548

Query: 2331 LPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLS 2152
            LPKI   GPPE L+VLLDGCV+G I+S   EK V+H+R LK+S  + IP+D+EVGYVPLS
Sbjct: 549  LPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPLS 608

Query: 2151 FGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDG 1972
             GGAYPGLYL TSPSRF+RPVRNIS+PS+GS NIE IGPFEQ +MEIRCPDGG+GGR+  
Sbjct: 609  MGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRKSS 668

Query: 1971 FPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYH 1792
            FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAFSSQ IQ RADQKLYH
Sbjct: 669  FPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYH 728

Query: 1791 LQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTI 1612
            LQTPQTPIVRT+ Y +YNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG I
Sbjct: 729  LQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQI 788

Query: 1611 YQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTV 1432
            YQ E IDL +Q    D++ R+F +SN +KS   SID+DGLP+VGQM+RP+EPY S +N V
Sbjct: 789  YQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEV 848

Query: 1431 NNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVC 1252
             ++  T   KGSE V VDYVAVD +NK K  QKVNIRFR PRNPVIGDKFSSRHGQKGVC
Sbjct: 849  TSSIHTLKRKGSEAVYVDYVAVDVKNK-KHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVC 907

Query: 1251 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPG 1072
            SQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL G++VDATPF  
Sbjct: 908  SQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRS 967

Query: 1071 AVKK-AGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRL 895
            +VKK +GE  S+S S VD+LG LL   GFNYHGLEVLYSGV GTELTCEIFIGPVYYQRL
Sbjct: 968  SVKKDSGESDSMSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRL 1027

Query: 894  RHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCS 715
            RHMVSDKFQVRSTGT+DQVTRQP          RFGEMERD++LAHGAAYLLHDRLHTCS
Sbjct: 1028 RHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1087

Query: 714  DHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPY 535
            D+HIADVCSLCGS+LTTT  QP K+ VREIGGLPPG  PKKVTCHAC+TSKGMETVAMPY
Sbjct: 1088 DYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPY 1147

Query: 534  VFKYLAAELAAMNVKMTLQLSNGAGA 457
            VF+YLAAELAAMN+KMTL+LS+GAGA
Sbjct: 1148 VFRYLAAELAAMNIKMTLKLSDGAGA 1173


>emb|CBI35100.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 1727 bits (4473), Expect = 0.0
 Identities = 854/1117 (76%), Positives = 966/1117 (86%), Gaps = 1/1117 (0%)
 Frame = -2

Query: 3804 FGDHELYPPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGN 3625
            FG  ELYPPQK+R  +T R AL+P+ECRQA  +Y+GK L +VCFQYGN  AI+EKF  G 
Sbjct: 21   FGQPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQ 80

Query: 3624 LPIMLKSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQ 3445
             PIMLKSK+CHLRGA   +L+S KEES+EMGGYFILNGLER+VRLLI+ KRNYP+S++R 
Sbjct: 81   FPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRN 140

Query: 3444 SFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKAL 3265
            SFR+R+EG+TDKAV IRCVR+DQS+V  +LYYL+NGSARLGFWI+G+E+LLPVGV LKAL
Sbjct: 141  SFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKAL 200

Query: 3264 IDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGE 3085
            IDT D EIY SLTC Y E+++GGKGAVGTQLVGERV+IILDEVRDLSL T  QCLQHIGE
Sbjct: 201  IDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGE 260

Query: 3084 YFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNM 2905
            +FQ VMDGLE +S+S V  +VL++YIFVHL NN DKFNLLIFM+QKLF+L+D T+ PDN 
Sbjct: 261  HFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNP 320

Query: 2904 DALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKN 2725
            D LQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDE+ K+ K+F+F SL H+KKV+DKN
Sbjct: 321  DVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDEINKR-KNFEFSSLAHVKKVMDKN 379

Query: 2724 PSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQ 2545
            PS+ + +AVENMLKTGRL+TQSGLDLQQ  GMTV AERLNFLRF+SHFR+VHRGASFAG 
Sbjct: 380  PSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGL 439

Query: 2544 RNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSIL 2365
            R TSVRKLLPEAWGFLCPVHTPDGEPCGLLNHM STCRITS+FDS+G  +D  K+R+SIL
Sbjct: 440  RTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSIL 499

Query: 2364 SVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIP 2185
            SVL GIGMTP+LPK+V+AGPPEVLSV+LDG V+GSI S  VE AV+HLRRLK+S IS IP
Sbjct: 500  SVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIP 559

Query: 2184 EDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRC 2005
            +DLEVGY+PLS GGAYPGLYLFTSPSRF+RPVRNIS+PS+   +IELIGPFEQ YMEIRC
Sbjct: 560  DDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRC 619

Query: 2004 PDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQA 1825
            PDG +GGRR+ FPATHEEIHPTG+LSVVA+LTP+SDHNQSPRNMYQCQM KQTMAFSSQA
Sbjct: 620  PDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQA 679

Query: 1824 IQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKS 1645
            I  RADQKLYHLQTPQTPIVRT+AY +Y++DEFPTGTNAIVAVLAY+GYDMEDAMILNKS
Sbjct: 680  INCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKS 739

Query: 1644 SVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRP 1465
            SV+RG+ HG IYQ E IDL D+   SD+ QR+F RSN DKS +S ID+DGLPYVGQM+ P
Sbjct: 740  SVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINP 799

Query: 1464 NEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDK 1285
            NEPY S +N V ++T+   LKGSE VIVDYVA+D +NK K PQKVNIRFRRPRNP+IGDK
Sbjct: 800  NEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKNK-KHPQKVNIRFRRPRNPIIGDK 858

Query: 1284 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLN 1105
            FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+
Sbjct: 859  FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 918

Query: 1104 GKYVDATPFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCE 928
            GK+VDATPF  +++KA GE  S S S VDELG +L SYGFNYHG+EVLYSG  GTELTCE
Sbjct: 919  GKFVDATPFSDSLRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCE 978

Query: 927  IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAA 748
            IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQP          RFGEMERD+MLAHGAA
Sbjct: 979  IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAA 1038

Query: 747  YLLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKT 568
            YLLHDRLHTCSDHHIADVCSLCGSILTT+IIQP K+A                      T
Sbjct: 1039 YLLHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKRA----------------------T 1076

Query: 567  SKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            SKGMETV+MPY+F++LAAELAAMN+KMTLQLSNGAGA
Sbjct: 1077 SKGMETVSMPYIFRFLAAELAAMNIKMTLQLSNGAGA 1113


>ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Citrus sinensis]
          Length = 1175

 Score = 1709 bits (4426), Expect = 0.0
 Identities = 823/1173 (70%), Positives = 986/1173 (84%), Gaps = 4/1173 (0%)
 Frame = -2

Query: 3963 KENQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELY 3784
            ++   + E LREL + HIESFDY+++ G+  +  +++ V ++D FT K L+IS G+ E++
Sbjct: 3    RKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHVKTVFVHDSFTNKRLKISVGNPEIF 62

Query: 3783 PPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQY--GNNFAIKEKFGFGNLPIML 3610
            PPQK++G+KT R AL P+ECRQA  +Y GK + +V FQY    +  ++E+F FG  P+ML
Sbjct: 63   PPQKEQGSKTLRDALLPFECRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 122

Query: 3609 KSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRER 3430
            K++ CHL+GA + +L+S KEE+ EMGGYFILNGLER+ R +I+ K+NYP+S++R SFR+R
Sbjct: 123  KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 182

Query: 3429 QEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTND 3250
            +EG+TDKAV IRCVR DQSSV  +LYYL NGS RLGFW++GKE+LLPVG+ LKAL+DTND
Sbjct: 183  REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 242

Query: 3249 LEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPV 3070
            LEI+  LTC Y E+++  KGAVG+ LV ERV+IIL EV+DLSL+T LQCLQHIGE+FQPV
Sbjct: 243  LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 302

Query: 3069 MDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQN 2890
            +DGL+++S+  V  +V++DYIFVHL +N+DKFNLLIFMLQKLF+LVDHT+  DN D+LQN
Sbjct: 303  IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 362

Query: 2889 QEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNV 2710
            QE+LLPGHLITIYLKEKL++WL K ++L+QDE++  GK FDF +L +IKKV++KNPSK +
Sbjct: 363  QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 422

Query: 2709 GMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSV 2530
            G ++E MLKTGRL TQ+GLDLQQ  G TV AERLNFLRFIS FR+VHRGASFAG R TSV
Sbjct: 423  GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 482

Query: 2529 RKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTG 2350
            RKLLPE+WGFLCPVHTPDGEPCGLLNHMTSTCR+ S++DS+G ++D  KMR SIL VL G
Sbjct: 483  RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 542

Query: 2349 IGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEV 2170
            +GM PSLPK+V++GPP VLSVLLDG V+G I S  +EK V+HLRRLK+S  S IP+DLEV
Sbjct: 543  VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 602

Query: 2169 GYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGN 1990
            GYVPLS GGAYPGLYLFTSP +F+RPVRNIS+PS+ S NIELIGPFEQ +MEIRCPDGG+
Sbjct: 603  GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 662

Query: 1989 GGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRA 1810
            GGRR+ FPATHEEIHPTG+LSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS QA++FRA
Sbjct: 663  GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 722

Query: 1809 DQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERG 1630
            DQKLYHLQTPQTPIVRT  Y +Y+IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSV+RG
Sbjct: 723  DQKLYHLQTPQTPIVRTNTYTKYSIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 782

Query: 1629 MFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYY 1450
            M HG IYQ E IDL D     D+ Q+LF R+   KS HS ID+DGLPYVGQM+ P EPY 
Sbjct: 783  MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 842

Query: 1449 STHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRH 1270
            S ++   N+ +T + KGSE+V VDYVAVD +N +  PQK NIRFR  RNP+IGDKFSSRH
Sbjct: 843  SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 902

Query: 1269 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVD 1090
            GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+GK++D
Sbjct: 903  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFMD 962

Query: 1089 ATPFPGAVKKAGEESSLSDSR--VDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIG 916
            ATPF  +VKK   ++   +S+  VDELG +L + GFNYHG+EVLYSGV GTELTCEIFIG
Sbjct: 963  ATPFANSVKKTNGDTGTDESKSLVDELGEMLRTCGFNYHGVEVLYSGVYGTELTCEIFIG 1022

Query: 915  PVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLH 736
            PVYYQRLRHMVSDKFQVRSTGT+DQ+TRQP          RFGEMERD++LAHGAAYLLH
Sbjct: 1023 PVYYQRLRHMVSDKFQVRSTGTMDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1082

Query: 735  DRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGM 556
            DRLHTCSD+H+ADVCSLCGS+LT T I P K+A+REIGGLPP   PKKVTCHAC+TSKGM
Sbjct: 1083 DRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSKGM 1142

Query: 555  ETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            ETVAMPYVF+YLAAELAAMN+K+TLQL +GA A
Sbjct: 1143 ETVAMPYVFRYLAAELAAMNIKITLQLGDGATA 1175


>ref|XP_007010837.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma cacao]
            gi|508727750|gb|EOY19647.1| Nuclear RNA polymerase A2
            isoform 2 [Theobroma cacao]
          Length = 1180

 Score = 1705 bits (4416), Expect = 0.0
 Identities = 836/1181 (70%), Positives = 984/1181 (83%), Gaps = 7/1181 (0%)
 Frame = -2

Query: 3978 MEKTRKE------NQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKT 3817
            ME+ R++      +   LE L+ELFK HIESFDY+++ G+  +L  ++PV+I+D  + KT
Sbjct: 1    MERQRRKRPGPFSDAEELEELKELFKHHIESFDYMIDEGLDLMLKRVKPVQIFDSSSNKT 60

Query: 3816 LRISFGDHELYPPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKF 3637
            LRI     E+YPPQKDR +KT   AL+P+ECRQA  +Y G F ++VCFQ+     ++EK 
Sbjct: 61   LRIWLDHPEVYPPQKDRSSKTSAGALYPFECRQAKISYTGSFHIDVCFQWDGGVVVREKL 120

Query: 3636 GFGNLPIMLKSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVS 3457
             FG  PIMLKSK C+LR A   +L++ KEES EMGGYFILNGLER+VRLLI+ KRNYP+S
Sbjct: 121  NFGEFPIMLKSKRCYLREADPRKLVACKEESREMGGYFILNGLERVVRLLILPKRNYPMS 180

Query: 3456 VIRQSFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVA 3277
            ++R SFR+R+EG+TDKAV IRCVR D SSV  +LYYL NGSARLGFW++G+E++LPVG+ 
Sbjct: 181  LVRNSFRDRREGYTDKAVVIRCVRGDLSSVTVKLYYLHNGSARLGFWVQGREYMLPVGII 240

Query: 3276 LKALIDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQ 3097
            LKALIDTND EIY  LTC Y E++  GKGAVGTQLVGER +IILDEV+ L+L T  QCLQ
Sbjct: 241  LKALIDTNDREIYTKLTCCYNEKNGEGKGAVGTQLVGERAKIILDEVQHLALFTQEQCLQ 300

Query: 3096 HIGEYFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAA 2917
            HIGE+FQP+M+G+E++S+S V   VL++YIFVHL +N+DKFNLLIFM+QKLF+L+D T+A
Sbjct: 301  HIGEHFQPIMEGMESESYSTVADVVLRNYIFVHLDDNNDKFNLLIFMVQKLFSLIDQTSA 360

Query: 2916 PDNMDALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKV 2737
            PDN D+LQNQEVLLPGHLITIYLKEKL++WL K ++L++D +  K K+FDF S+  +KKV
Sbjct: 361  PDNSDSLQNQEVLLPGHLITIYLKEKLEDWLRKGKKLIEDAINNKSKNFDFCSMKDVKKV 420

Query: 2736 LDKNPSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGAS 2557
            ++KN    V  A+EN+LKTGRLITQ+GLDLQQ  G TV AERLN+ RF+S FR VHRGAS
Sbjct: 421  MEKNRPTQVSAAIENLLKTGRLITQTGLDLQQRAGFTVQAERLNYHRFLSFFRCVHRGAS 480

Query: 2556 FAGQRNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMR 2377
            FAG R TSVRKLLPE+WGFLCPVHTPDGEPCGLLNHMT TCRITS+++S G ++D  K+R
Sbjct: 481  FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYYNSPGNIRDFFKIR 540

Query: 2376 LSILSVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPI 2197
            +SIL VL G+GMT S PK+  AGPP+VL VLLDG V+GS+ S   EK V+HLRRLKL+  
Sbjct: 541  MSILDVLVGVGMTTSWPKVDHAGPPQVLPVLLDGRVVGSLPSGEAEKVVAHLRRLKLAAA 600

Query: 2196 SGIPEDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYM 2017
            S IP+DLEVGYVPLS GG YPGLYLFTSPSRF+RPVRNIS+PS    +IELIGPFEQ +M
Sbjct: 601  SVIPDDLEVGYVPLSLGGTYPGLYLFTSPSRFVRPVRNISIPSADGKDIELIGPFEQVFM 660

Query: 2016 EIRCPDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAF 1837
            EIRCPDGGNGGR + FPATHEEI PT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAF
Sbjct: 661  EIRCPDGGNGGRSNIFPATHEEISPTAMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAF 720

Query: 1836 SSQAIQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMI 1657
            S QAI  RADQKLYHLQTPQTPIVRT  Y +Y +DE+P+GTNAIVAVLAYTGYDMEDAMI
Sbjct: 721  SLQAINARADQKLYHLQTPQTPIVRTKTYTKYCMDEYPSGTNAIVAVLAYTGYDMEDAMI 780

Query: 1656 LNKSSVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQ 1477
            LNKSSVERGM HG IYQ E IDL D K  SD+ QR+F R ++D+S  S +D+DGLP+VGQ
Sbjct: 781  LNKSSVERGMCHGQIYQTETIDLGDDKSKSDRGQRIFKREHSDRSISSCLDSDGLPHVGQ 840

Query: 1476 MLRPNEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPV 1297
            ++RPNEPY ST N V N+ + +  KGSETVIVDYVAVD ++K K  QK NIRFR PRNPV
Sbjct: 841  VIRPNEPYCSTINQVTNSKRLYNHKGSETVIVDYVAVDTKSK-KHLQKANIRFRHPRNPV 899

Query: 1296 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKG 1117
            IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKG
Sbjct: 900  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKG 959

Query: 1116 GSLNGKYVDATPFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTE 940
            GSL+GK+VDATPF  +VK+A G+  + S+S VDELG +L + GFNYHG+EVLYSGV GTE
Sbjct: 960  GSLHGKFVDATPFSDSVKEAKGKTEAESESLVDELGSMLRARGFNYHGVEVLYSGVYGTE 1019

Query: 939  LTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLA 760
            LTCEIFIGPVYYQRLRHMVSDK+QVR+TG VDQ+TRQP          RFGEMERDAMLA
Sbjct: 1020 LTCEIFIGPVYYQRLRHMVSDKYQVRATGQVDQITRQPIKGRKRGGGIRFGEMERDAMLA 1079

Query: 759  HGAAYLLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCH 580
            HGAAYLLHDRLHTCSD+HIADVCSLCGSILTT+I+QPPK+ VREIGGLPP   PKKVTCH
Sbjct: 1080 HGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSIVQPPKRVVREIGGLPPARAPKKVTCH 1139

Query: 579  ACKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            AC+TSKGMETVAMPYVF+YLAAELAAMN+ MT+QL++GAGA
Sbjct: 1140 ACQTSKGMETVAMPYVFRYLAAELAAMNITMTIQLNSGAGA 1180


>ref|XP_007133696.1| hypothetical protein PHAVU_011G201300g [Phaseolus vulgaris]
            gi|561006696|gb|ESW05690.1| hypothetical protein
            PHAVU_011G201300g [Phaseolus vulgaris]
          Length = 1180

 Score = 1704 bits (4413), Expect = 0.0
 Identities = 837/1169 (71%), Positives = 984/1169 (84%), Gaps = 6/1169 (0%)
 Frame = -2

Query: 3951 PNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQK 3772
            P+ E+LRELFK HIESFD++V++G++T LL+I+P+E+ D FT   LRI   +  +YPPQK
Sbjct: 9    PDFEALRELFKHHIESFDHMVKAGLETTLLHIKPIEVLDDFTTTKLRIWLENPVVYPPQK 68

Query: 3771 DRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICH 3592
            +R +KT R AL P+ECRQA  +YAGK  ++VCFQY +   I+E   FG  PIML+SK+C+
Sbjct: 69   ERISKTMREALLPFECRQAKISYAGKITIDVCFQYNDGPVIRENVNFGQFPIMLQSKLCN 128

Query: 3591 LRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTD 3412
            LRGA   +L+S KEE++EMGGYFILNGLER++RLLI+ KRNYP+S++R SF +R+EG+TD
Sbjct: 129  LRGADPKKLVSCKEEASEMGGYFILNGLERVIRLLILPKRNYPMSMVRSSFCDRREGYTD 188

Query: 3411 KAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYAS 3232
            KAV IRCVR DQSS++ RLYYL+NGSARLGFW+RG+E+LLPVG+ LKALIDT D EIY +
Sbjct: 189  KAVVIRCVRADQSSLSIRLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVN 248

Query: 3231 LTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLET 3052
            LT  Y E++  GKGAVGTQLVGER +IILDE+RDLSL T  QCL++IGE+FQP+M  L  
Sbjct: 249  LTSCYNEKYAKGKGAVGTQLVGERAKIILDELRDLSLFTRRQCLEYIGEHFQPIMPELMK 308

Query: 3051 KSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLP 2872
             S++ V  +VLKD I VHL N+ DKFNLLIFMLQKLF+L+D T+ PDN D+LQN EVLLP
Sbjct: 309  DSYAIVADAVLKDCILVHLDNDFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLP 368

Query: 2871 GHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVEN 2692
            GHLI++Y+KEKL++WL K ++LL DE+QKK   FDF  +  +KK++DKN +K V  +VEN
Sbjct: 369  GHLISLYIKEKLEDWLQKGKKLLMDEIQKKSNKFDFSDIAQVKKIMDKNSAKLVSASVEN 428

Query: 2691 MLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPE 2512
            +LKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+SHFR+VHRGASFAG R T+VRKLLPE
Sbjct: 429  LLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFMSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 2511 AWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPS 2332
            +WGFLCPVHTPDGEPCGLLNHMT TCRITSFFDSQG +KD  K++ SI  +L  +GMT S
Sbjct: 489  SWGFLCPVHTPDGEPCGLLNHMTRTCRITSFFDSQGNIKDYFKIQKSIRDILMEVGMTSS 548

Query: 2331 LPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLS 2152
            LPKI   GPPE L+VLLDGCV+G I+S  VEK V+++R LK+S  S IP D+EVGYVPLS
Sbjct: 549  LPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAYIRELKVSSASVIPGDMEVGYVPLS 608

Query: 2151 FGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDG 1972
             GGAYPGLYLFTSPSRF+RPV+NIS+PS+GS +IELIGPFEQ +MEIRC DGG+GGR+  
Sbjct: 609  MGGAYPGLYLFTSPSRFVRPVKNISIPSNGSESIELIGPFEQVFMEIRCLDGGDGGRKSS 668

Query: 1971 FPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYH 1792
            FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAFSSQ IQ RADQKLYH
Sbjct: 669  FPATHEEIHPTEMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYH 728

Query: 1791 LQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTI 1612
            LQTPQTPIVRT+ Y +YNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG I
Sbjct: 729  LQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQI 788

Query: 1611 YQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTV 1432
            YQ E IDL +Q+  SD++ R+F +SN +K    SID+DGLP+VGQM+RP+EPY S +N V
Sbjct: 789  YQTETIDLTEQRGKSDRSSRIFRKSNVEKLGCPSIDSDGLPHVGQMIRPDEPYCSIYNEV 848

Query: 1431 NNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVC 1252
             ++T+T+  KGSE V VDYVAVD +NK K  QKVNIRFR PRNPVIGDKFSSRHGQKGVC
Sbjct: 849  TSSTQTYKRKGSEAVYVDYVAVDVKNK-KHIQKVNIRFRHPRNPVIGDKFSSRHGQKGVC 907

Query: 1251 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPG 1072
            SQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL G++VDATPF  
Sbjct: 908  SQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRS 967

Query: 1071 AVKKAGEES-SLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRL 895
            + KK GE S S S S VD+LG LL   GFNYHGLEVLYSGV GTELTCEIFIGPVYYQRL
Sbjct: 968  STKKDGEGSDSKSGSLVDDLGVLLKEKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRL 1027

Query: 894  RHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCS 715
            RHMVSDKFQVRSTGT+DQVTRQP          RFGEMERD++LAHGAAYLLHDRLHTCS
Sbjct: 1028 RHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1087

Query: 714  DHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIP-----KKVTCHACKTSKGMET 550
            D+HIADVCSLCGS+L+TT IQP K+ VR+IGGLPPG +P     KKV+CHAC+TSKGMET
Sbjct: 1088 DYHIADVCSLCGSMLSTTFIQPQKRPVRQIGGLPPGRLPPGRAAKKVSCHACQTSKGMET 1147

Query: 549  VAMPYVFKYLAAELAAMNVKMTLQLSNGA 463
            VAMPYVF+YLAAELAAMN+KMTL+L++GA
Sbjct: 1148 VAMPYVFRYLAAELAAMNIKMTLKLNDGA 1176


>ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Cicer arietinum]
            gi|502078798|ref|XP_004486058.1| PREDICTED: probable
            DNA-directed RNA polymerase I subunit RPA2-like isoform
            X2 [Cicer arietinum]
          Length = 1177

 Score = 1694 bits (4388), Expect = 0.0
 Identities = 826/1162 (71%), Positives = 973/1162 (83%), Gaps = 1/1162 (0%)
 Frame = -2

Query: 3948 NLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQKD 3769
            N ++LR+L KPHIESFD+++++G++T+ + I+P+E+  P    TL+IS  + +++ PQK+
Sbjct: 16   NFDALRDLLKPHIESFDHMIDAGLKTMFIGIKPLEVPHPTQPTTLKISMDNPKIFEPQKE 75

Query: 3768 RGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICHL 3589
            RG    R+ L+P+ECRQA  +Y G F  E+CFQY N   ++EKF FG  PIML+SK+C+L
Sbjct: 76   RGFSKSRNILYPFECRQAKISYTGTFTAELCFQYDNGPIVREKFNFGQFPIMLQSKLCNL 135

Query: 3588 RGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTDK 3409
            RGA   +L+SYKEE++E+GGYFILNGLER++RLLIM KRNYP+S +R SF ER+EG+TDK
Sbjct: 136  RGASPKKLVSYKEEASEVGGYFILNGLERVMRLLIMPKRNYPMSTVRSSFSERREGYTDK 195

Query: 3408 AVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYASL 3229
            AV IRCVR DQ+SV+ +LYYL+NGSARLGFWI G+E++LPVG+ LKALIDT D EIY +L
Sbjct: 196  AVVIRCVRADQTSVSIKLYYLRNGSARLGFWILGREYMLPVGIVLKALIDTTDREIYVNL 255

Query: 3228 TCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLETK 3049
            T  Y E+++ GKGAVGTQLVGER +IILDEVRDLSL T LQCLQ+IGE+FQP++ GL+ +
Sbjct: 256  TSCYNEKYEKGKGAVGTQLVGERAKIILDEVRDLSLFTRLQCLQYIGEHFQPILQGLKNE 315

Query: 3048 SHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLPG 2869
            SH  V  +VL+DYI VHL NN DKFNLLIFMLQKLF+L+D T+ PDN D+LQNQEVLLPG
Sbjct: 316  SHHIVADAVLRDYILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQEVLLPG 375

Query: 2868 HLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVENM 2689
            HLIT+YLKEKL+EWL K +RLL DE++KKG  F+F  +  +KKVL+KN +K +  A+ENM
Sbjct: 376  HLITLYLKEKLEEWLQKGKRLLLDEIEKKGATFEFGRIADVKKVLEKNHTKGISTAIENM 435

Query: 2688 LKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPEA 2509
            LKTGRL+T +GLDL Q  G TV AER+NFLRFISHFR+VHRG+SFAG R T+VRKLLPE+
Sbjct: 436  LKTGRLVTTTGLDLHQRAGYTVQAERINFLRFISHFRAVHRGSSFAGLRTTTVRKLLPES 495

Query: 2508 WGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPSL 2329
            WGFLCPVHTPDGEPCGLLNHMT TCR+TSF+DS+G +KD  K++LSIL++L  IGMT SL
Sbjct: 496  WGFLCPVHTPDGEPCGLLNHMTRTCRVTSFYDSEGNIKDYFKIKLSILNILVEIGMTQSL 555

Query: 2328 PKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLSF 2149
            PKI   GPPEVL+VLLDGC++G I S  VEK V+H+R LK+S  + IP D+EVGYVPLS 
Sbjct: 556  PKIFLPGPPEVLTVLLDGCIVGFIPSTEVEKVVAHIRELKVSSAAVIPNDMEVGYVPLSM 615

Query: 2148 GGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDGF 1969
            GGAYPGLYLFTSPSRF+RPVRN+S+PS    N+ELIGPFEQ +MEIRCPDGG+GGR+  F
Sbjct: 616  GGAYPGLYLFTSPSRFVRPVRNLSIPSTNE-NVELIGPFEQVFMEIRCPDGGDGGRKSPF 674

Query: 1968 PATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYHL 1789
            PATHEEIHPTG+LSVV NLTP+SDHNQSPRNMYQCQMAKQTM FSSQ IQ RADQKLYHL
Sbjct: 675  PATHEEIHPTGMLSVVGNLTPWSDHNQSPRNMYQCQMAKQTMGFSSQTIQHRADQKLYHL 734

Query: 1788 QTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTIY 1609
            QTPQTPIVRT AY EY+IDE+P+GTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG IY
Sbjct: 735  QTPQTPIVRTRAYSEYSIDEYPSGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIY 794

Query: 1608 QVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTVN 1429
            Q E IDL ++   SDQ+ R+F +S  DK    SID+DGLP+VGQM+ P+EPY ST+N V 
Sbjct: 795  QTETIDLTEKGGKSDQSARVFRKSKLDKPC-PSIDSDGLPHVGQMIWPDEPYCSTYNEVT 853

Query: 1428 NTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVCS 1249
            N T  F  KGSE V VDYVAVD + K K   KVNIRFR PRNPVIGDKFSSRHGQKGVCS
Sbjct: 854  NKTYLFKKKGSEPVYVDYVAVDTKTK-KNLNKVNIRFRHPRNPVIGDKFSSRHGQKGVCS 912

Query: 1248 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPGA 1069
            QLWPDIDMPFSG TGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+GK+ DATPF  +
Sbjct: 913  QLWPDIDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFKDATPFRSS 972

Query: 1068 VKKAGEES-SLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRLR 892
            VKK  EES S S S VDELG +L   GFNYHG EVLYSGV GTELTCEIFIGPVYYQRLR
Sbjct: 973  VKKDDEESGSKSASLVDELGVMLKEKGFNYHGCEVLYSGVYGTELTCEIFIGPVYYQRLR 1032

Query: 891  HMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCSD 712
            HMVSDK+QVRSTGT+DQVTRQP          RFGEMERD++LAHGAAYLLHDRLHTCSD
Sbjct: 1033 HMVSDKYQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSD 1092

Query: 711  HHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPYV 532
            +HIADVCS+CGS+LTTT  QP K+ VREIGGLPP   P+KVTCHAC++SKGME VAMPY+
Sbjct: 1093 YHIADVCSICGSMLTTTFQQPRKRPVREIGGLPPARAPRKVTCHACQSSKGMEKVAMPYI 1152

Query: 531  FKYLAAELAAMNVKMTLQLSNG 466
            F+YLAAELAAMN+KMTL+L++G
Sbjct: 1153 FRYLAAELAAMNIKMTLKLTDG 1174


>ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
            gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I
            subunit, putative [Ricinus communis]
          Length = 1159

 Score = 1686 bits (4365), Expect = 0.0
 Identities = 839/1180 (71%), Positives = 972/1180 (82%), Gaps = 12/1180 (1%)
 Frame = -2

Query: 3966 RKENQPNL----ESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFG 3799
            +KEN  +      +L+EL + HI+SFDY++E G++ +L NI+P                 
Sbjct: 7    KKENPSSAMGDYSALQELTRHHIDSFDYMIERGLEIMLDNIKP----------------- 49

Query: 3798 DHELYPPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLP 3619
                        ++T    L P+ECRQA  +Y GKF  +VCF+Y     I+EK+ FG LP
Sbjct: 50   ----------ESSRTKHKRLLPFECRQAKISYTGKFEADVCFEYHGKAVIREKYNFGQLP 99

Query: 3618 IMLKSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSF 3439
            IMLKS++CHL G  + QL+S+ EES EMGGYFILNGLER+VRLLIM KRNYP+S +R SF
Sbjct: 100  IMLKSRLCHLYGVDSQQLVSFNEESAEMGGYFILNGLERVVRLLIMPKRNYPMSTVRGSF 159

Query: 3438 RERQEGFTDKAVTIRCVRD------DQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVA 3277
            R+R+EG+TDKAV IRCVR+      DQSSV+ +LYYL++GSARLGFWI+G+E+LLP G+ 
Sbjct: 160  RDRREGYTDKAVVIRCVREYQSSLTDQSSVSVKLYYLRSGSARLGFWIQGREYLLPAGIV 219

Query: 3276 LKALIDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQ 3097
            LKAL +T D EIY  LTC Y E+++  KGAVG+QLVGER +IILDEVRDLSL T  +CL+
Sbjct: 220  LKALAETTDREIYEKLTCCYDEKYEKAKGAVGSQLVGERAKIILDEVRDLSLFTQSECLR 279

Query: 3096 HIGEYFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAA 2917
            HIGE+FQPVMDGLE ++ S V  +VLKDYIFVHL N DDKFNLLIFMLQKLF+LVD T+ 
Sbjct: 280  HIGEHFQPVMDGLEKETFSNVAHAVLKDYIFVHLNNYDDKFNLLIFMLQKLFSLVDQTSV 339

Query: 2916 PDNMDALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKV 2737
             DN D+LQNQEVLLPGHL+TIYLKEKL+EWL KA+++LQ+E+ K   +F+FLS++ +KKV
Sbjct: 340  VDNPDSLQNQEVLLPGHLVTIYLKEKLEEWLRKAKKVLQEEIAKNN-NFNFLSVLDVKKV 398

Query: 2736 LDKNPSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGAS 2557
            +DKNPS  + +AVENMLKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+S FR+VHRGAS
Sbjct: 399  IDKNPSTTISLAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGAS 458

Query: 2556 FAGQRNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMR 2377
            FAG R TSVRKLLPE+WGFLCPVHTPDGEPCGLLNHMT +CRITS+FDSQG VKD   +R
Sbjct: 459  FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRSCRITSYFDSQGAVKDFFDIR 518

Query: 2376 LSILSVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPI 2197
             SIL VLT +GMT SLPK+V+AGPP+VLSVLLDG V+GSI S  VEK V HLRRLK++  
Sbjct: 519  KSILGVLTSLGMTSSLPKLVQAGPPQVLSVLLDGRVVGSIPSSQVEKVVVHLRRLKVAAS 578

Query: 2196 SGIPEDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYM 2017
            S IP+DLEVGYVPLS GGA+PGLYLFTSPSRF+RPV+NIS+P+    NIELIGPFEQ +M
Sbjct: 579  SVIPDDLEVGYVPLSMGGAFPGLYLFTSPSRFIRPVKNISIPAGEGENIELIGPFEQVFM 638

Query: 2016 EIRCPDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAF 1837
            EIRCPDGGNGGR D FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMAF
Sbjct: 639  EIRCPDGGNGGRSDAFPATHEEIHPTDMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAF 698

Query: 1836 SSQAIQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMI 1657
            S Q+++FRADQKLYHLQTPQTPIVRT++Y +Y +DE+PTGTNAIVAVLAYTGYDMEDAMI
Sbjct: 699  SLQSLRFRADQKLYHLQTPQTPIVRTSSYTKYCVDEYPTGTNAIVAVLAYTGYDMEDAMI 758

Query: 1656 LNKSSVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQ 1477
            LNKSSVERGM HG IYQ E IDL ++   SD+AQR+F RSN DKS HS ID+DGLPYVGQ
Sbjct: 759  LNKSSVERGMCHGQIYQTETIDLSEEGSRSDRAQRMFRRSNIDKSLHSVIDSDGLPYVGQ 818

Query: 1476 MLRPNEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPV 1297
            M+ PNEPY S +N + NTT+T   KGS+ VIVDYVA+D +NK K  QKVNIRFR PRNP+
Sbjct: 819  MIHPNEPYCSIYNEITNTTRTNNRKGSDPVIVDYVAIDTKNK-KHLQKVNIRFRHPRNPI 877

Query: 1296 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKG 1117
            IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKG
Sbjct: 878  IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESLAAKG 937

Query: 1116 GSLNGKYVDATPFPGAVK--KAGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGT 943
            GSLNGK+VDATPF  +VK    GE  S S+S VD+LG +L S+GFNYHG+EVLYSGV GT
Sbjct: 938  GSLNGKFVDATPFTSSVKNVNGGEAKSESESLVDDLGNMLRSHGFNYHGVEVLYSGVYGT 997

Query: 942  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAML 763
            ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQ+TRQP          RFGEMERDAML
Sbjct: 998  ELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQITRQPIKGRKRGGGIRFGEMERDAML 1057

Query: 762  AHGAAYLLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTC 583
            AHGAAYLLHDRLHTCSD+HIADVCSLCGSILTT+ IQ  K+ VR+IGGLPP   PKKV C
Sbjct: 1058 AHGAAYLLHDRLHTCSDYHIADVCSLCGSILTTSFIQTQKRVVRDIGGLPPVGAPKKVAC 1117

Query: 582  HACKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 463
            H+C+TSKGMETVAMPYVF+YLAAELAAMN+KM +QLS GA
Sbjct: 1118 HSCQTSKGMETVAMPYVFRYLAAELAAMNIKMNVQLSGGA 1157


>ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Solanum
            lycopersicum]
          Length = 1184

 Score = 1685 bits (4363), Expect = 0.0
 Identities = 827/1176 (70%), Positives = 975/1176 (82%), Gaps = 1/1176 (0%)
 Frame = -2

Query: 3981 AMEKTRKENQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISF 3802
            AM +     + +  +L+ELF  HIESFDY+V++G++T+LLNI+P+EI D F+   LRI F
Sbjct: 13   AMSRPHLVAEKDYSALKELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKLRIWF 72

Query: 3801 GDHELYPPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNL 3622
            G  EL+PPQK+R +K    AL+P+ECRQA  +Y+GKFLV++CFQYG+   I+EKF FG  
Sbjct: 73   GKPELFPPQKERASKAMHDALYPFECRQAKISYSGKFLVDICFQYGDGAVIREKFNFGQF 132

Query: 3621 PIMLKSKICHLRGAG-TWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQ 3445
            PIMLKSK+CHLRGA  + +L++YKEE +EMGGYFIL GLER++RL+I+ KRNYP S+ R 
Sbjct: 133  PIMLKSKLCHLRGADDSKKLVAYKEEPSEMGGYFILKGLERVIRLIILPKRNYPTSMARN 192

Query: 3444 SFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKAL 3265
            SFR+R+EG++DKAV IRCVR+DQS+V+ +LYYL NGSARLGFWI+G+E+LLPVG+ LKAL
Sbjct: 193  SFRDRREGYSDKAVVIRCVREDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGIILKAL 252

Query: 3264 IDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGE 3085
            +DT D EIY +LTC Y EE    KG+VGTQLVGER +IILDEV+ LSL T  QCL+HIGE
Sbjct: 253  VDTTDHEIYVNLTCCYNEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLRHIGE 312

Query: 3084 YFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNM 2905
            +FQPV+ G++  S+  V  +VL+DYIFVHL NN DKFNLLIFMLQKLF+L+D T+  DN 
Sbjct: 313  HFQPVVIGMQNDSYKTVADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSVLDNP 372

Query: 2904 DALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKN 2725
            D+LQNQEVLLPGHLITIYLKEKLQ+WL K +R LQ+E   + K F+  SL  +KK ++KN
Sbjct: 373  DSLQNQEVLLPGHLITIYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKAIEKN 432

Query: 2724 PSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQ 2545
              K +G+ +E+MLKTGRL TQSGLDLQQ  GMTV AE+LNFLRF+SHFR+VHRGASFAG 
Sbjct: 433  APKQIGLTIESMLKTGRLATQSGLDLQQRAGMTVQAEKLNFLRFLSHFRAVHRGASFAGL 492

Query: 2544 RNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSIL 2365
            R TSVRKLLPE+WGFLCPVHTPDGEPCGLLNHMT++CRITS++DS+G VKD  KMR+SIL
Sbjct: 493  RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTASCRITSYYDSKGNVKDFFKMRMSIL 552

Query: 2364 SVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIP 2185
            +VL  IGMTPS PK+V+AGPPE+LSVLLDG + G I S+++EKAV+HLRRLKLS  S IP
Sbjct: 553  NVLIAIGMTPSSPKLVQAGPPELLSVLLDGRIAGYIPSDLIEKAVTHLRRLKLSSTSSIP 612

Query: 2184 EDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRC 2005
             DLEVGY+PLS  GAYPGLYLFTSPSRF+RPVRNIS P++   ++ELIGPFEQ YMEI C
Sbjct: 613  VDLEVGYIPLSMNGAYPGLYLFTSPSRFVRPVRNISAPAEEGNDLELIGPFEQVYMEISC 672

Query: 2004 PDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQA 1825
            PDGG+GGR+  FPATH EIHPT ILSVV NLTP+SDHNQSPRNMYQCQM KQTM FSSQA
Sbjct: 673  PDGGDGGRKTLFPATHREIHPTNILSVVGNLTPWSDHNQSPRNMYQCQMGKQTMGFSSQA 732

Query: 1824 IQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKS 1645
            +  RADQKLYHLQTPQTPIVRT AY++Y +D++P GTNAIVAVLAY+GYDMEDAM+LNKS
Sbjct: 733  LNCRADQKLYHLQTPQTPIVRTKAYEKYCVDDYPLGTNAIVAVLAYSGYDMEDAMVLNKS 792

Query: 1644 SVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRP 1465
            SV+RGM HG IYQ E IDL +Q   SD+AQRLF RSN DKS+H  ID+DGLPYVGQ + P
Sbjct: 793  SVDRGMCHGHIYQTETIDLTEQSAKSDRAQRLFRRSNLDKSSHQLIDSDGLPYVGQRINP 852

Query: 1464 NEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDK 1285
            NEPY S +N + + T    LKGSE V+VDYVAVD +NK    QK NIRFRR RNPVIGDK
Sbjct: 853  NEPYCSIYNEITSQTTCMKLKGSEPVVVDYVAVDVKNKAH-LQKANIRFRRSRNPVIGDK 911

Query: 1284 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLN 1105
            FSSRHGQKGVCSQLWPD+DMPFS VTGMRPDLIINPHAFPSRMTI MLLESIAAKGG+L+
Sbjct: 912  FSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGALH 971

Query: 1104 GKYVDATPFPGAVKKAGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEI 925
            GK+VDATPF   +K++  ESS   S VD+LG +LA  GFN+HG EVLYSGV GTELTC I
Sbjct: 972  GKFVDATPFSNTMKESESESS---SLVDDLGSMLAVCGFNHHGTEVLYSGVYGTELTCRI 1028

Query: 924  FIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAY 745
            FIGPVYYQRLRHMVSDKFQVRSTG VD +TRQP          RFGEMERD++LAHGA+Y
Sbjct: 1029 FIGPVYYQRLRHMVSDKFQVRSTGQVDHITRQPIKGRKRGGGVRFGEMERDSLLAHGASY 1088

Query: 744  LLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTS 565
            LLHDRLHT SDHHIADVCS CGS+LT+++IQPPK+AV+ I    P   PKKVTC AC++S
Sbjct: 1089 LLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQAILKQLPAREPKKVTCVACRSS 1148

Query: 564  KGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            KGMETVAMPYVFKYLAAELAAMN+KMTL+LSN AGA
Sbjct: 1149 KGMETVAMPYVFKYLAAELAAMNIKMTLKLSNEAGA 1184


>ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            [Solanum tuberosum]
          Length = 1179

 Score = 1684 bits (4362), Expect = 0.0
 Identities = 829/1180 (70%), Positives = 977/1180 (82%), Gaps = 7/1180 (0%)
 Frame = -2

Query: 3975 EKTRKENQPNL------ESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTL 3814
            EK +  ++P+L       +L+ELF  HIESFDY+V++G++T+LLNI+P+EI D F+   L
Sbjct: 4    EKPKAMSRPHLVAEKDYSALKELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKL 63

Query: 3813 RISFGDHELYPPQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFG 3634
            RI FG  EL+PPQK+R +KT   AL+P+ECRQA  +Y GKFLV++CFQYG+   I+EKF 
Sbjct: 64   RIWFGKPELFPPQKERASKTMHDALYPFECRQAKLSYTGKFLVDICFQYGDGAVIREKFN 123

Query: 3633 FGNLPIMLKSKICHLRGAG-TWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVS 3457
            FG  PIMLKSK+CHLRGA  + +L++YKEE +EMGGYFIL GLER++RL+I+ KRNYP S
Sbjct: 124  FGQFPIMLKSKLCHLRGADDSRKLIAYKEEPSEMGGYFILKGLERVIRLIILPKRNYPTS 183

Query: 3456 VIRQSFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVA 3277
            + R SFR+R+EG++DKAV IRCVR+DQS+V+ +LYYL NGSARLGFWI+G+E+LLPVG+ 
Sbjct: 184  MARNSFRDRREGYSDKAVVIRCVREDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGII 243

Query: 3276 LKALIDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQ 3097
            LKAL+DT D EIY +LTC Y EE    KG+VGTQLVGER +IILDEV+ LSL T  QCL+
Sbjct: 244  LKALVDTTDHEIYVNLTCCYNEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLR 303

Query: 3096 HIGEYFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAA 2917
            HIGE+FQPV+ G++  S+  V  +VL+DYIFVHL NN DKFNLLIFMLQKLF+L+D T+ 
Sbjct: 304  HIGEHFQPVVIGMQNDSYKTVADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSV 363

Query: 2916 PDNMDALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKV 2737
             DN D+LQNQEVLLPGHLITIYLKEKLQ+WL K +R LQ+E   + K F+  SL  +KK 
Sbjct: 364  LDNPDSLQNQEVLLPGHLITIYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKA 423

Query: 2736 LDKNPSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGAS 2557
            ++KN  K +G+A+E+MLKTGRL TQSGLDLQQ  GMTV AE+LNFLRF+SHFR+VHRGAS
Sbjct: 424  IEKNAPKQIGLAIESMLKTGRLATQSGLDLQQRAGMTVQAEKLNFLRFLSHFRAVHRGAS 483

Query: 2556 FAGQRNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMR 2377
            FAG R TSVRKLLPE+WGFLCPVHTPDGEPCGLLNHMT++CRITS++DS+G VKD  KMR
Sbjct: 484  FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTASCRITSYYDSKGNVKDFFKMR 543

Query: 2376 LSILSVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPI 2197
            +SIL+VL  IGMTP  PK+V+ GPPE+LSVLLDG + G I S+++EKAV+HLRRLKLS  
Sbjct: 544  MSILNVLIAIGMTPPSPKLVQGGPPELLSVLLDGRIAGYIPSDLIEKAVTHLRRLKLSST 603

Query: 2196 SGIPEDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYM 2017
            S IP DLEVGY+PLS  GAYPGLYLFTSPSRF+RPVRNIS P++   ++EL+GPFEQ YM
Sbjct: 604  SSIPVDLEVGYIPLSMNGAYPGLYLFTSPSRFVRPVRNISAPAEEGNDLELVGPFEQVYM 663

Query: 2016 EIRCPDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAF 1837
            EI CPDGG+GGR+  FPATH EIHPT ILSVV NLTP+SDHNQSPRNMYQCQM KQTM F
Sbjct: 664  EISCPDGGDGGRKTLFPATHREIHPTNILSVVGNLTPWSDHNQSPRNMYQCQMGKQTMGF 723

Query: 1836 SSQAIQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMI 1657
            SSQA+  RADQKLYHLQTPQTPIVRT AY++Y +D++P GTNAIVAVLAY+GYDMEDAM+
Sbjct: 724  SSQALNCRADQKLYHLQTPQTPIVRTKAYEKYCVDDYPLGTNAIVAVLAYSGYDMEDAMV 783

Query: 1656 LNKSSVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQ 1477
            LNKSSV+RGM HG IYQ E IDL +Q   SD+AQRLF RSN DKS+H  ID DGLPYVGQ
Sbjct: 784  LNKSSVDRGMCHGHIYQTETIDLTEQSAKSDRAQRLFRRSNLDKSSHQLIDTDGLPYVGQ 843

Query: 1476 MLRPNEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPV 1297
             + PNEPY S +N + + T +  LKGSE V+VDYVAVD +NK    QK NIRFRR RNPV
Sbjct: 844  RINPNEPYCSIYNEITSQTTSMKLKGSEPVVVDYVAVDVKNKTH-LQKANIRFRRSRNPV 902

Query: 1296 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKG 1117
            IGDKFSSRHGQKGVCSQLWPD+DMPFS VTGMRPDLIINPHAFPSRMTI MLLESIAAKG
Sbjct: 903  IGDKFSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDLIINPHAFPSRMTIAMLLESIAAKG 962

Query: 1116 GSLNGKYVDATPFPGAVKKAGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTEL 937
            G+L+GK+VDATPF   +K++  ESS   S VD+LG +LA  GFN+HG EVLYSGV GTEL
Sbjct: 963  GALHGKFVDATPFSNTMKESESESS---SLVDDLGSMLAVCGFNHHGTEVLYSGVYGTEL 1019

Query: 936  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAH 757
            TC IFIGPVYYQRLRHMVSDKFQVRSTG VD +TRQP          RFGEMERD++LAH
Sbjct: 1020 TCLIFIGPVYYQRLRHMVSDKFQVRSTGQVDHITRQPIKGRKRGGGVRFGEMERDSLLAH 1079

Query: 756  GAAYLLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHA 577
            GAAYLLHDRLHT SDHHIADVCS CGS+LT+++IQPPK+AV+ I    P   PKKVTC A
Sbjct: 1080 GAAYLLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQVILKQLPAREPKKVTCVA 1139

Query: 576  CKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            C++SKGMETVAMPYVFKYLAAELAAMN+KMTL+LSN AGA
Sbjct: 1140 CRSSKGMETVAMPYVFKYLAAELAAMNIKMTLKLSNEAGA 1179


>ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
            vesca subsp. vesca]
          Length = 1171

 Score = 1653 bits (4280), Expect = 0.0
 Identities = 825/1173 (70%), Positives = 968/1173 (82%), Gaps = 3/1173 (0%)
 Frame = -2

Query: 3966 RKENQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHEL 3787
            R+ +  +L  LRELF+ HIESFDYLV +G+  +L +I+PV++ +P T +TLRI F D  +
Sbjct: 8    RRTSAGDLAHLRELFRHHIESFDYLVSAGLGVMLRDIKPVQVDNPLTGETLRIWFADDPI 67

Query: 3786 YP-PQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIML 3610
               P KDR  +     L+P+ECRQ   +Y GK L ++ FQ G+   ++E+F FG  PIML
Sbjct: 68   LGRPLKDRSTEP----LYPFECRQTRISYTGKLLADIYFQRGDKAPVREQFNFGQFPIML 123

Query: 3609 KSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRER 3430
             SK C+LRG    QL+  KEES+EMGGYFILNGLER++R +I+ KRNYP+S +R SFR+R
Sbjct: 124  MSKCCNLRGHDPQQLVYCKEESSEMGGYFILNGLERVIRPVILPKRNYPMSTVRNSFRDR 183

Query: 3429 QEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTND 3250
            +EG+TDKAV IRC RDDQSSV  +LYYLQNGSARLG WI+GKEFLLPVG+ LKALIDT D
Sbjct: 184  KEGYTDKAVVIRCARDDQSSVTVKLYYLQNGSARLGVWIQGKEFLLPVGLILKALIDTPD 243

Query: 3249 LEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPV 3070
             E+YASLTC Y E+ + GKGAVGTQLVGER +II++EV DL L T  QCL+HIGE+FQP+
Sbjct: 244  NELYASLTCCYPEKFEKGKGAVGTQLVGERAQIIINEVVDLGLFTRGQCLEHIGEHFQPL 303

Query: 3069 MDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQN 2890
            M GLE + +S VG +VLKDYIFVHL  N+DKFNLLIFMLQKLF+L+D T+  DN D+LQN
Sbjct: 304  MGGLENEPYSVVGDAVLKDYIFVHLDKNEDKFNLLIFMLQKLFSLMDQTSVLDNPDSLQN 363

Query: 2889 QEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNV 2710
            QEVLLPGHLITIYLKEKL++WL + ++LLQDE++K+  + +F S+  +KKVLDKNP++ +
Sbjct: 364  QEVLLPGHLITIYLKEKLEDWLQRTKKLLQDEIKKESNNINFGSVDSLKKVLDKNPTRQI 423

Query: 2709 GMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSV 2530
             +AVENMLKTGR+ TQ+GLDLQQ  G +V AERLNFLRF+SHFR+VHRGASFAG R TSV
Sbjct: 424  SLAVENMLKTGRINTQTGLDLQQRAGFSVQAERLNFLRFLSHFRAVHRGASFAGLRTTSV 483

Query: 2529 RKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTG 2350
            RKLLPE+WGFLCPVHTPDGEPCGLLNHMT TCRITS+FD+QG ++D  KM++SIL+VL  
Sbjct: 484  RKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSYFDAQGNIRDFTKMQMSILNVLIE 543

Query: 2349 IGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEV 2170
            +GM PSLP +V AG P  LSVLLDG V+G ISS  VEK V+HLR+LK+S  S IP+DLEV
Sbjct: 544  VGMIPSLPMLVHAGLPANLSVLLDGRVVGYISSTQVEKVVAHLRKLKVSAASVIPDDLEV 603

Query: 2169 GYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGN 1990
            GYVPLS GGAYPGLYLFTSPSRF+RPV+NIS+ +    NIELIGPFEQ +MEIRCPDG +
Sbjct: 604  GYVPLSMGGAYPGLYLFTSPSRFVRPVKNISISAVEGQNIELIGPFEQVFMEIRCPDGRD 663

Query: 1989 GGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRA 1810
            GGR+D FPATHEEIHPTG+LSVVANLTP+S+HNQSPRNMYQCQMAKQTM FS QA++ RA
Sbjct: 664  GGRKDAFPATHEEIHPTGMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMGFSLQALRNRA 723

Query: 1809 DQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERG 1630
            DQKLYHL+TPQ+PIVRT  Y  Y +DE+PTGTNAIVAVL+YTGYDMEDAMIL+KSSV+RG
Sbjct: 724  DQKLYHLKTPQSPIVRTKTYTNYCVDEYPTGTNAIVAVLSYTGYDMEDAMILSKSSVDRG 783

Query: 1629 MFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYY 1450
            MFHG +YQ E+IDL DQK  S  +QR F RS  DKS HS ID+DGLPYVGQ ++P+EPYY
Sbjct: 784  MFHGLVYQTESIDLSDQKGRSG-SQRSFRRSAADKSYHSLIDSDGLPYVGQTIKPDEPYY 842

Query: 1449 STHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRH 1270
            ST++ V    +T   KGSE  IVDYVA+DG+   K  QKVNIRFR PRNP+IGDKFSSRH
Sbjct: 843  STYDEVKGAIRTTKRKGSEPAIVDYVAIDGK---KQLQKVNIRFRHPRNPIIGDKFSSRH 899

Query: 1269 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVD 1090
            GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+GKYVD
Sbjct: 900  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKYVD 959

Query: 1089 ATPFPGAVKKAGEESSLSDSR--VDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIG 916
            ATPF  + KK  EE++   S+  VDELG +L   GFNY+G EVLYSGV GTELTCEIFIG
Sbjct: 960  ATPFANSEKKVKEETNGEKSKTLVDELGEMLKVKGFNYNGAEVLYSGVYGTELTCEIFIG 1019

Query: 915  PVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLH 736
            PVYYQRLRHMVSDKFQVRSTG VDQVTRQP          RFGEMERD++LAHGAAYLLH
Sbjct: 1020 PVYYQRLRHMVSDKFQVRSTGMVDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1079

Query: 735  DRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGM 556
            DRLHTCSD+HIADVCSLCGSILTT+ +QPP + V EI G+PP   PKKVTCHACKTSKGM
Sbjct: 1080 DRLHTCSDYHIADVCSLCGSILTTSSVQPPVR-VCEIPGMPPMRAPKKVTCHACKTSKGM 1138

Query: 555  ETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            ETVAMPYVF+YLAAELAAMN+K+ LQLSN +GA
Sbjct: 1139 ETVAMPYVFRYLAAELAAMNIKLNLQLSNASGA 1171


>ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X2
            [Glycine max]
          Length = 1151

 Score = 1643 bits (4254), Expect = 0.0
 Identities = 818/1165 (70%), Positives = 954/1165 (81%), Gaps = 1/1165 (0%)
 Frame = -2

Query: 3951 PNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYPPQK 3772
            P+ E+LRELFK HIESFDY+V++G+ T+L +I+PVE++D FT   LRI   +  LYPPQK
Sbjct: 9    PDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 3771 DRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKSKICH 3592
            +R ++T R AL P+ECRQA  +Y+GK  ++VCFQY +   I+E   FG  PIML+SK+C+
Sbjct: 69   ERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCN 128

Query: 3591 LRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTD 3412
            LRGA   +L+SYKEE++EMGGYFILNGLER+VRLLI+ KRNYP+S++R SF +R+EG+TD
Sbjct: 129  LRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTD 188

Query: 3411 KAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLEIYAS 3232
            KAV IRCVR DQSS++ RLYYL+NGSARLGFW+RG+E+LLPVG+ LKALIDT D EIY +
Sbjct: 189  KAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVN 248

Query: 3231 LTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLET 3052
            LT  Y E+++ GKGAVGTQLVGER +IILDE+RDLSL T LQCL++IGE+FQPVM+ L+ 
Sbjct: 249  LTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELKN 308

Query: 3051 KSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLP 2872
             S+  V  +VLKD I VHL NN DKFNLLIFMLQKLF+L+D T+ PDN D+LQN EVLLP
Sbjct: 309  DSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLP 368

Query: 2871 GHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVEN 2692
            GHLIT+YLKEKL++WL K RRLL DE+ KK K FDF  +V +KKV+DKN  K V  AVEN
Sbjct: 369  GHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVEN 428

Query: 2691 MLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPE 2512
            MLKTGRL+TQ+GLDLQQ  G TV AERLNFLRF+SHFR+VHRGASFAG R T+VRKLLPE
Sbjct: 429  MLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 2511 AWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPS 2332
            +WGFLCPVHTPDGEPCGLLNHMT T RITSFFDSQG +KD  K+++SIL+VL  +GMTPS
Sbjct: 489  SWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPS 548

Query: 2331 LPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLS 2152
            LPKI   GPPE L+VLLDGCV+G I+S  VEK V+H+R LK+S ++ IP+D+EVGYVPLS
Sbjct: 549  LPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPLS 608

Query: 2151 FGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDG 1972
             GGAYPGLYL TSPSRF+RPVRNIS+ SDGS NIELIGPFEQ +MEIRCPDGG+GGR+  
Sbjct: 609  MGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRKSS 668

Query: 1971 FPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYH 1792
            FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQ   A   + F++ +   R       
Sbjct: 669  FPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQYGKANNGIFFTNYSTSCR------- 721

Query: 1791 LQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTI 1612
                  P V ++           +GTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG I
Sbjct: 722  ------PKVISS-----------SGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQI 764

Query: 1611 YQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTV 1432
            YQ E IDL +Q   SD++ R+F +SN +KS   SID+DGLP+VGQM+RP+EPY S +N V
Sbjct: 765  YQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEV 824

Query: 1431 NNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVC 1252
             ++  T   KGSE V VDYVA D +NK K  QKVNIRFR PRNPVIGDKFSSRHGQKGVC
Sbjct: 825  TSSIHTLKRKGSEAVYVDYVAADVKNK-KHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVC 883

Query: 1251 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPG 1072
            SQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL G++VDATPF  
Sbjct: 884  SQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRS 943

Query: 1071 AV-KKAGEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRL 895
            +V K +GE  S S S VD+LG LL   GFNYHGLEVLYSGV GTELTCEIFIGPVYYQRL
Sbjct: 944  SVTKDSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRL 1003

Query: 894  RHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCS 715
            RHMVSDKFQVRSTGT+DQVTRQP          RFGEMERD++LAHGAAYLLHDRLHTCS
Sbjct: 1004 RHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCS 1063

Query: 714  DHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPY 535
            D+HIADVCSLCGS+L TT IQP K+ VREIGGLPPG  PKKVTCHAC+TSKGMETVAMPY
Sbjct: 1064 DYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPY 1123

Query: 534  VFKYLAAELAAMNVKMTLQLSNGAG 460
            VF+YLAAELAAMN+KMTL+LS+GAG
Sbjct: 1124 VFRYLAAELAAMNIKMTLKLSDGAG 1148


>ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
            vesca subsp. vesca]
          Length = 1169

 Score = 1640 bits (4246), Expect = 0.0
 Identities = 815/1173 (69%), Positives = 966/1173 (82%), Gaps = 3/1173 (0%)
 Frame = -2

Query: 3966 RKENQPNLESLRELFKPHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHEL 3787
            R+ +  +L  LRELF+ HI+SFDYL+ +G+  +L +I+PV++ +P T +TLRI F D  +
Sbjct: 6    RRTSAGDLAHLRELFRHHIDSFDYLITAGLGVMLRDIKPVQVDNPLTGETLRIWFADDPI 65

Query: 3786 YP-PQKDRGNKTFRSALFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIML 3610
               P KDR ++     L+P+ECRQ   +Y GK L ++ FQ G+   ++E+F FG  PIML
Sbjct: 66   LGRPLKDRSSEP----LYPFECRQTRISYTGKLLADIYFQRGDKAPVREQFNFGQFPIML 121

Query: 3609 KSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRER 3430
             SK C+LRG    QL+S KEE++EMGGYFILNGLER++R +I+ KRNYP+S +R SFR+R
Sbjct: 122  MSKCCNLRGHDPQQLVSCKEEASEMGGYFILNGLERVIRPVILPKRNYPMSTVRNSFRDR 181

Query: 3429 QEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTND 3250
            +EG+TDKAV IRC RDDQSSV  +LYYLQNGSARLG WI+GKEFLLPVG+ LKAL+DT D
Sbjct: 182  KEGYTDKAVVIRCARDDQSSVTVKLYYLQNGSARLGVWIQGKEFLLPVGLILKALVDTPD 241

Query: 3249 LEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPV 3070
             E+YASLTC Y  + + GKGAVGTQLVGER +II++EV +L L T  QCL++IGE+FQP+
Sbjct: 242  NELYASLTCCYPGKFEKGKGAVGTQLVGERAQIIINEVVELGLFTRGQCLENIGEHFQPL 301

Query: 3069 MDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQN 2890
            M GLE +S+S VG +VLKDYIFVHL  N+DKFNLLIFMLQKLF+L+D T+  DN D+LQN
Sbjct: 302  MSGLENESYSVVGDAVLKDYIFVHLDKNEDKFNLLIFMLQKLFSLMDQTSVLDNPDSLQN 361

Query: 2889 QEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNV 2710
            QEVLLPGHLITIYLKEKL++WL + ++LLQDE++K+  + +F S+  +KKVLDKNP++ +
Sbjct: 362  QEVLLPGHLITIYLKEKLEDWLQRTKKLLQDEIKKENNNINFGSVDSLKKVLDKNPTRQI 421

Query: 2709 GMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSV 2530
             +AVENMLKTGR+ TQ+GLDLQQ  G +V AERLNFLRF+SHFR+VHRGASFAG R TSV
Sbjct: 422  SLAVENMLKTGRINTQTGLDLQQRAGFSVQAERLNFLRFLSHFRAVHRGASFAGLRTTSV 481

Query: 2529 RKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTG 2350
            RKLLPE+WGFLCPVHTPDGEPCGLLNHMT TCRITS+FD+QG ++D  K+R+SIL+VL  
Sbjct: 482  RKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSYFDAQGNIRDFTKIRMSILNVLIE 541

Query: 2349 IGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEV 2170
            +GM PSLP +V  G P  LSVLLDG V+G ISS  VEK V+HLR+LK+S  S IP+DLEV
Sbjct: 542  VGMIPSLPMLVHVGLPANLSVLLDGRVVGYISSTQVEKVVAHLRKLKVSAASVIPDDLEV 601

Query: 2169 GYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGN 1990
            GYVPLS GGAYPGLYLFTSPSRF+RPV+NIS+ +    NIELIGPFEQ +MEI+CPDG +
Sbjct: 602  GYVPLSMGGAYPGLYLFTSPSRFVRPVKNISISAVEGQNIELIGPFEQVFMEIKCPDGRD 661

Query: 1989 GGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRA 1810
            GGR+D FPATHEEIHPTG+LSVVANLTP+S+HNQSPRNMYQCQMAKQTM FS QA++ RA
Sbjct: 662  GGRKDAFPATHEEIHPTGMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMGFSLQALRNRA 721

Query: 1809 DQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERG 1630
            DQKLYHL+TPQ+PIVRT  Y  Y +DE+PTGTNAIVAVL+YTGYDMEDAMIL+KSSV+RG
Sbjct: 722  DQKLYHLKTPQSPIVRTKTYTNYCVDEYPTGTNAIVAVLSYTGYDMEDAMILSKSSVDRG 781

Query: 1629 MFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYY 1450
            MFHG +YQ E++DL DQK  S  +QR F RS  DKS HS ID+DGLPYVGQ + P+EPYY
Sbjct: 782  MFHGLVYQTESVDLSDQKGRSG-SQRSFRRSAADKSHHSLIDSDGLPYVGQTINPDEPYY 840

Query: 1449 STHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRH 1270
            S ++ V    +T   KGSE  IVDYVA+DG+   K  QKVNIRFR PRNP+IGDKFSSRH
Sbjct: 841  SIYDEVKGAIRTTKRKGSEPAIVDYVAIDGK---KHLQKVNIRFRHPRNPIIGDKFSSRH 897

Query: 1269 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVD 1090
            GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI MLLES+AAKGGSL+GK+VD
Sbjct: 898  GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVD 957

Query: 1089 ATPFPGAVKKAGEESSLSDSR--VDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIG 916
            ATPF  + KK  EE++   S+  VDELG +L   GFNY+G EVLYSGV GTELTCEIFIG
Sbjct: 958  ATPFANSEKKVNEETNGEKSKTLVDELGEMLKVKGFNYYGAEVLYSGVYGTELTCEIFIG 1017

Query: 915  PVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLH 736
            PVYYQRLRHMVSDKFQVRSTG VDQVTRQP          RFGEMERD++LAHGAAYLLH
Sbjct: 1018 PVYYQRLRHMVSDKFQVRSTGMVDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLH 1077

Query: 735  DRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSKGM 556
            DRLHTCSD+HIADVCSLCGSILTT+ +Q P+  VREI G+PP   PKKVTCHACKTSKGM
Sbjct: 1078 DRLHTCSDYHIADVCSLCGSILTTSSVQ-PQVPVREIPGMPPMRAPKKVTCHACKTSKGM 1136

Query: 555  ETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            ETVAMPYVF+YLAAELAAMN+K+ LQLSN  GA
Sbjct: 1137 ETVAMPYVFRYLAAELAAMNIKLNLQLSNATGA 1169


>ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citrus clementina]
            gi|557530116|gb|ESR41366.1| hypothetical protein
            CICLE_v10024768mg [Citrus clementina]
          Length = 1082

 Score = 1616 bits (4184), Expect = 0.0
 Identities = 781/1082 (72%), Positives = 921/1082 (85%), Gaps = 4/1082 (0%)
 Frame = -2

Query: 3690 LVEVCFQY--GNNFAIKEKFGFGNLPIMLKSKICHLRGAGTWQLLSYKEESTEMGGYFIL 3517
            + +V FQY    +  ++E+F FG  P+MLK++ CHL+GA + +L+S KEE+ EMGGYFIL
Sbjct: 1    MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFIL 60

Query: 3516 NGLERLVRLLIMQKRNYPVSVIRQSFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNG 3337
            NGLER+ R +I+ K+NYP+S++R SFR+R+EG+TDKAV IRCVR DQSSV  +LYYL NG
Sbjct: 61   NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG 120

Query: 3336 SARLGFWIRGKEFLLPVGVALKALIDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERV 3157
            S RLGFW++GKE+LLPVG+ LKAL+DTNDLEI+  LTC Y E+++  KGAVG+ LV ERV
Sbjct: 121  SVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERV 180

Query: 3156 RIILDEVRDLSLSTHLQCLQHIGEYFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDK 2977
            +IIL EV+DLSL+T LQCLQHIGE+FQPV+DGL+++S+  V  +V++DYIFVHL +N+DK
Sbjct: 181  KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK 240

Query: 2976 FNLLIFMLQKLFALVDHTAAPDNMDALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQD 2797
            FNLLIFMLQKLF+LVDHT+  DN D+LQNQE+LLPGHLITIYLKEKL++WL K ++L+QD
Sbjct: 241  FNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD 300

Query: 2796 ELQKKGKDFDFLSLVHIKKVLDKNPSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVA 2617
            E++  GK FDF +L +IKKV++KNPSK +G ++E MLKTGRL TQ+GLDLQQ  G TV A
Sbjct: 301  EIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 360

Query: 2616 ERLNFLRFISHFRSVHRGASFAGQRNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTST 2437
            ERLNFLRFIS FR+VHRGASFAG R TSVRKLLPE+WGFLCPVHTPDGEPCGLLNHMTST
Sbjct: 361  ERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 420

Query: 2436 CRITSFFDSQGIVKDSLKMRLSILSVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSI 2257
            CR+ S++DS+G ++D  KMR SIL VL G+GM PSLPK+V++GPP VLSVLLDG V+G I
Sbjct: 421  CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 480

Query: 2256 SSEIVEKAVSHLRRLKLSPISGIPEDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNIS 2077
             S  +EK V+HLRRLK+S  S IP+DLEVGYVPLS GGAYPGLYLFTSP +F+RPVRNIS
Sbjct: 481  PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS 540

Query: 2076 VPSDGSLNIELIGPFEQAYMEIRCPDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSD 1897
            +PS+ S NIELIGPFEQ +MEIRCPDGG+GGRR+ FPATHEEIHPTG+LSVVANLTP+SD
Sbjct: 541  LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 600

Query: 1896 HNQSPRNMYQCQMAKQTMAFSSQAIQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTG 1717
            HNQSPRNMYQCQMAKQTM FS QA++FRADQKLYHLQTPQTPIVRT  Y +Y+IDE+PTG
Sbjct: 601  HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYSIDEYPTG 660

Query: 1716 TNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARS 1537
            TNAIVAVLAYTGYDMEDAMILNKSSV+RGM HG IYQ E IDL D     D+ Q+LF R+
Sbjct: 661  TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRN 720

Query: 1536 NTDKSTHSSIDADGLPYVGQMLRPNEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGR 1357
               KS HS ID+DGLPYVGQM+ P EPY S ++   N+ +T + KGSE+V VDYVAVD +
Sbjct: 721  KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMK 780

Query: 1356 NKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 1177
            N +  PQK NIRFR  RNP+IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP
Sbjct: 781  NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 840

Query: 1176 HAFPSRMTIGMLLESIAAKGGSLNGKYVDATPFPGAVKKAGEESSLSDSR--VDELGPLL 1003
            HAFPSRMTI MLLES+AAKGGSL+GK++DATPF  +VKK   ++   +S+  VDELG +L
Sbjct: 841  HAFPSRMTIAMLLESVAAKGGSLHGKFMDATPFANSVKKTNGDTGTDESKSLVDELGEML 900

Query: 1002 ASYGFNYHGLEVLYSGVLGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPX 823
             + GFNYHG+EVLYSGV GTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGT+DQ+TRQP 
Sbjct: 901  RTCGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTMDQITRQPI 960

Query: 822  XXXXXXXXXRFGEMERDAMLAHGAAYLLHDRLHTCSDHHIADVCSLCGSILTTTIIQPPK 643
                     RFGEMERD++LAHGAAYLLHDRLHTCSD+H+ADVCSLCGS+LT T I P K
Sbjct: 961  KGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHVADVCSLCGSVLTATFIHPQK 1020

Query: 642  KAVREIGGLPPGSIPKKVTCHACKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 463
            +A+REIGGLPP   PKKVTCHAC+TSKGMETVAMPYVF+YLAAELAAMN+K+TLQL +GA
Sbjct: 1021 RAIREIGGLPPARAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKITLQLGDGA 1080

Query: 462  GA 457
             A
Sbjct: 1081 TA 1082


>ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutrema salsugineum]
            gi|557093303|gb|ESQ33885.1| hypothetical protein
            EUTSA_v10006599mg [Eutrema salsugineum]
          Length = 1183

 Score = 1600 bits (4144), Expect = 0.0
 Identities = 787/1181 (66%), Positives = 947/1181 (80%), Gaps = 7/1181 (0%)
 Frame = -2

Query: 3978 MEKTRKENQPNLESLRELFK---PHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRI 3808
            +++ +K+  P +E   EL      HIESFDY+ E G+  +   I+PV +Y+P T + L I
Sbjct: 3    VKEKKKDTVPKIEDFTELHNLVTHHIESFDYMTEKGLAVMFSRIKPVTVYEPSTERKLSI 62

Query: 3807 SFGDHELYPPQKDRGNKTFRS-ALFPYECRQAGSTYAGKFLVEVCFQYGNN-FAIKEKFG 3634
               D  +Y PQK+    T R  ALFP+ECRQA  +Y G  + E+CF+Y  + + +++++ 
Sbjct: 63   WLEDPRVYSPQKESLRSTSRKEALFPFECRQAKISYTGSLMAEICFRYDEDEYVVRDRYE 122

Query: 3633 FGNLPIMLKSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSV 3454
            FG  PIML SK+CHLRGA   QLL YKE ++EMGGYFILNG+ER+ R +I  KRN+P  +
Sbjct: 123  FGEFPIMLMSKLCHLRGADCRQLLKYKESTSEMGGYFILNGIERVFRCVIAPKRNHPTGM 182

Query: 3453 IRQSFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVAL 3274
            +R SF  R+EG++DKAV IRCVRDDQSSV  +LYYL+NGSAR+GFWI  +E+LLPVGV L
Sbjct: 183  VRNSFCGRREGYSDKAVAIRCVRDDQSSVTVKLYYLRNGSARVGFWIGAREYLLPVGVVL 242

Query: 3273 KALIDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQH 3094
            KAL +TND EIY +LTC Y E +  G GA+GTQL+ ER +IILDEVRDL L T  QC ++
Sbjct: 243  KALTETNDEEIYENLTCCYNERYGRGDGAIGTQLIRERSKIILDEVRDLGLFTRDQCRKY 302

Query: 3093 IGEYFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAP 2914
            +GE FQP +DGLE +S+  V  +VLK+YIFVHL N+DDKFNLLIF++QKLF+LVD T+ P
Sbjct: 303  LGERFQPALDGLEKESYPTVAEAVLKNYIFVHLDNDDDKFNLLIFLIQKLFSLVDQTSLP 362

Query: 2913 DNMDALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVL 2734
            DN D+LQNQE+L+PGHLITIYLKEKL+EWL K + L++DE   + K F F ++  +KK++
Sbjct: 363  DNPDSLQNQEILVPGHLITIYLKEKLEEWLRKCKSLIEDEF-NRSKKFSFETIADVKKII 421

Query: 2733 DKNPSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASF 2554
            +KNP +++GM++E +LK+GRL TQSGLDLQQ  G TV AERLNFLRF+S FR+VHRGASF
Sbjct: 422  NKNPPRSIGMSIETLLKSGRLNTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASF 481

Query: 2553 AGQRNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRL 2374
            AG R T+VRKLLPE+WGFLCPVHTPDGEPCGLLNHMT TCRITS FDS G ++D LK+R 
Sbjct: 482  AGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSQFDSNGNIRDFLKIRK 541

Query: 2373 SILSVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPIS 2194
            S++ VL G+GM PSLPK+VRAGPP+V++VLLDG V+GS+SS +V + V++LRRLK+   S
Sbjct: 542  SVVDVLVGVGMVPSLPKLVRAGPPKVITVLLDGQVVGSLSSNLVTEVVAYLRRLKVEAPS 601

Query: 2193 GIPEDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYME 2014
             IPEDLEVGYVP S GG+YPGLYL + PSRF+RPV+N SVPSD   NIEL+GPFEQ +ME
Sbjct: 602  VIPEDLEVGYVPTSMGGSYPGLYLASCPSRFIRPVKNNSVPSD---NIELVGPFEQVFME 658

Query: 2013 IRCPDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFS 1834
            I CPDGGNGGR +   ATHEEIHPTGI+SVVANLTP+SDHNQSPRNMYQCQMAKQTMA+S
Sbjct: 659  ISCPDGGNGGRNNSSTATHEEIHPTGIISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYS 718

Query: 1833 SQAIQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMIL 1654
            +QA+QFRADQK+YHLQTPQ+P+VRT  Y  Y+IDE PTGTNAIVAVLA+TG+DMEDAMIL
Sbjct: 719  TQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMIL 778

Query: 1653 NKSSVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQM 1474
            NKSSVERGM HG IYQ E +DL DQ+  SD   + F RS  DKS HS IDADGLPY+GQ 
Sbjct: 779  NKSSVERGMCHGQIYQTETVDLSDQRSRSDNGNQSFRRSKVDKSAHSCIDADGLPYIGQK 838

Query: 1473 LRPNEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVI 1294
            + PNEPY S ++ V N+ KT   KG++ VIVD+V+VD ++K K PQK NIRFR  RNP+I
Sbjct: 839  IYPNEPYCSIYDGVTNSIKTMKRKGTDPVIVDFVSVDMKSK-KHPQKANIRFRHARNPII 897

Query: 1293 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGG 1114
            GDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTI MLLESIAAKGG
Sbjct: 898  GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGG 957

Query: 1113 SLNGKYVDATPFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTEL 937
            SL G++VDATPF  AVKK  GEE S S   VD+LG +L   GFNY+G E LYSG LG EL
Sbjct: 958  SLRGEFVDATPFRDAVKKPNGEEESKSSLLVDDLGSMLKEKGFNYYGTETLYSGYLGVEL 1017

Query: 936  TCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAH 757
             CEIF+GPVYYQRLRHMVSDKFQVRSTG VDQ+TRQP          RFGEMERDAMLAH
Sbjct: 1018 KCEIFMGPVYYQRLRHMVSDKFQVRSTGLVDQLTRQPIKGRKRGGGIRFGEMERDAMLAH 1077

Query: 756  GAAYLLHDRLHTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCH 580
            GA+YLLHDRLHT SDHHIADVCSLCGS+LT++++    KK +++IG LPPG  PKKVTC 
Sbjct: 1078 GASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQDIGKLPPGRTPKKVTCD 1137

Query: 579  ACKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 457
            +CKTSKGMETVAMPYVF+YLAAELAAMN+K+TLQLS   G+
Sbjct: 1138 SCKTSKGMETVAMPYVFRYLAAELAAMNIKVTLQLSGREGS 1178


>ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
            lyrata] gi|297339431|gb|EFH69848.1| hypothetical protein
            ARALYDRAFT_313639 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score = 1561 bits (4043), Expect = 0.0
 Identities = 771/1174 (65%), Positives = 930/1174 (79%), Gaps = 13/1174 (1%)
 Frame = -2

Query: 3951 PNLESLRELFK---PHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLR-------ISF 3802
            P +E L+EL      HIESFDY+ + G+  +   I+PV +YDP T   L        +  
Sbjct: 11   PTMEDLKELHNLVTHHIESFDYMTQKGLDVMFNRIKPVSVYDPNTENELSNILFFMILWL 70

Query: 3801 GDHELYPPQKDRGNKTFRSA-LFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGN 3625
             +  ++ PQK+    T R   L P+ECRQA  +Y G F+ +VCF+Y +   ++++F FG 
Sbjct: 71   ENPVVFAPQKESFRSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDRFDFGQ 130

Query: 3624 LPIMLKSKICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQ 3445
             PIML SK+C LRGA   +LL  KE ++EMGGYFILNG+ER+ R +I  KRN+P S+IR 
Sbjct: 131  FPIMLMSKLCSLRGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRN 190

Query: 3444 SFRERQEGFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKAL 3265
            SFR+R+EG+T+KAV  RCVRDDQSSV  +LYYL+NGSAR+GFWI G+E+LLPVG+ LKAL
Sbjct: 191  SFRDRKEGYTEKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKAL 250

Query: 3264 IDTNDLEIYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGE 3085
             +T D EIY SL C Y E +  G GA+GTQL+ ER +IILDEVRDL L T  QC +H+G+
Sbjct: 251  TNTCDEEIYESLNCCYSEHYGRGDGAIGTQLIRERAKIILDEVRDLGLFTREQCRKHLGQ 310

Query: 3084 YFQPVMDGLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNM 2905
            +FQPV+DGLE +SH  V  +VL+DY+FVHL N+ DKFNLLIF++QKL++LVD T+ PDN 
Sbjct: 311  HFQPVLDGLEKESHPMVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNP 370

Query: 2904 DALQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKN 2725
            D+LQNQE+L+PGH+ITIYLKEKL++WL K + LL+DEL      F F SL  +KK+++KN
Sbjct: 371  DSLQNQEILVPGHVITIYLKEKLEDWLRKCKSLLKDELLNTSSKFSFESLADVKKLINKN 430

Query: 2724 PSKNVGMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQ 2545
            P +++G ++E +LKTG L TQSGLDLQQ  G TV AERLNFLRF+S FR+VHRGASFAG 
Sbjct: 431  PPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGL 490

Query: 2544 RNTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSIL 2365
            R T+VRKLLPE+WGFLCPVHTPDG PCGLLNHMT T RITS FDS+G ++D LK+R S++
Sbjct: 491  RTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTCTSRITSQFDSKGNIRDFLKIRKSVV 550

Query: 2364 SVLTGIGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIP 2185
             VLTG GM  SLPK+VRAGPP+V+ VLLDG V+G++SS +V K VS+LRRLK+   S IP
Sbjct: 551  EVLTGAGMVSSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYLRRLKVEAPSVIP 610

Query: 2184 EDLEVGYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRC 2005
            EDLEVGYVP+S GG+YPGLYL + P+RF+RPV+NIS+PS+   NIELIGPFEQ +MEI C
Sbjct: 611  EDLEVGYVPISMGGSYPGLYLASCPARFIRPVKNISIPSE---NIELIGPFEQVFMEISC 667

Query: 2004 PDGGNGGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQA 1825
            PDGGNGGR +  PATHEEIHPTG++SVVANLTP+SDHNQSPRNMYQCQMAKQTMA+S+QA
Sbjct: 668  PDGGNGGRNNSSPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQA 727

Query: 1824 IQFRADQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKS 1645
            +QFRADQK+YHLQTPQ+P+VRT  Y  Y+IDE PTGTNAIVAVLA+TG+DMEDAMILNKS
Sbjct: 728  LQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKS 787

Query: 1644 SVERGMFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRP 1465
            SVERGM HG IYQ ENIDL DQ    D   + F RS TDKS HS IDADGLPYVGQ + P
Sbjct: 788  SVERGMCHGQIYQTENIDLSDQNSRYDSGHKSFRRSTTDKSDHSRIDADGLPYVGQKIYP 847

Query: 1464 NEPYYSTHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDK 1285
            +EPY   ++ V    +    KG++ VIVD+V+VD ++K K PQK NIRFR  RNP+IGDK
Sbjct: 848  DEPYCRIYDEVTGKQRLMKGKGTDPVIVDFVSVDMKSK-KHPQKANIRFRHARNPIIGDK 906

Query: 1284 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLN 1105
            FSSRHGQKGVCSQLWPDI+MPF+GVTGMRPDLIINPHAFPSRMTI MLLESIAAKGGSL+
Sbjct: 907  FSSRHGQKGVCSQLWPDIEMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLH 966

Query: 1104 GKYVDATPFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCE 928
            GK+VDATPF  AVKK  GE+ S S   VD+LG +L   GFNY+G E LYSG LG EL CE
Sbjct: 967  GKFVDATPFRDAVKKTNGEKESKSSLLVDDLGSMLKEKGFNYYGTETLYSGSLGVELKCE 1026

Query: 927  IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAA 748
            IF+GPVYYQRLRHMVSDKFQVRSTG VDQ+T QP          RFGEMERD++LAHGA+
Sbjct: 1027 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1086

Query: 747  YLLHDRLHTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCHACK 571
            YLLHDRLHT SDHHIADVCSLCGS+LT++++    KK ++  G LPPG  PKKVTCH+C 
Sbjct: 1087 YLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIKVNGKLPPGRTPKKVTCHSCG 1146

Query: 570  TSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSN 469
            TSKGMETVAMPYVF+YLAAELA+MN+KMTLQLS+
Sbjct: 1147 TSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1180


>ref|XP_006306612.1| hypothetical protein CARUB_v10008127mg [Capsella rubella]
            gi|482575323|gb|EOA39510.1| hypothetical protein
            CARUB_v10008127mg [Capsella rubella]
          Length = 1171

 Score = 1560 bits (4038), Expect = 0.0
 Identities = 772/1172 (65%), Positives = 929/1172 (79%), Gaps = 8/1172 (0%)
 Frame = -2

Query: 3951 PNLESLRELFK---PHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYP 3781
            PN+E  +EL      HIESFDY+ + G++ +   I+PV                +  ++ 
Sbjct: 11   PNIEDFKELHNLVTHHIESFDYMTDKGLEVMFNRIKPVT---------------NPVVFA 55

Query: 3780 PQKDRGNKTFRSA-LFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKS 3604
            PQK+  + T R   LFP+ECRQA  +Y G F+ +VCF+Y     +++KF FG  PIML S
Sbjct: 56   PQKESFSSTSRKEPLFPFECRQAKISYTGTFMADVCFKYNEGVVVRDKFDFGQFPIMLMS 115

Query: 3603 KICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQE 3424
            K+C LRGA   +LL  KE ++EMGGYF+LNG+ER+ R +I  KRN+P S+IR SFR+R+E
Sbjct: 116  KLCSLRGADCRKLLKCKESTSEMGGYFVLNGIERVFRCVIAPKRNHPTSMIRNSFRDRRE 175

Query: 3423 GFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLE 3244
            G++DKAV IRCVRDDQSSV  +LYYL+NGSAR+GFWI G+E+LLPVG+ LKAL  TND E
Sbjct: 176  GYSDKAVAIRCVRDDQSSVTVKLYYLRNGSARVGFWIGGREYLLPVGLVLKALTKTNDEE 235

Query: 3243 IYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMD 3064
            +Y SL C Y E +  G GA+GTQLV ER ++ILDEVRD+ L T  QC +H+GE+FQPV+D
Sbjct: 236  VYKSLNCCYNENYGRGDGAIGTQLVRERAKVILDEVRDMGLFTREQCRKHLGEHFQPVLD 295

Query: 3063 GLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQE 2884
            GLE +S+  V  +VL+DYIFVHL N+ DKFNLLIF++QKL++LVD T+ PDN D+LQNQE
Sbjct: 296  GLEKESYPTVAEAVLRDYIFVHLDNDHDKFNLLIFLIQKLYSLVDQTSLPDNPDSLQNQE 355

Query: 2883 VLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKG--KDFDFLSLVHIKKVLDKNPSKNV 2710
            +L+PGHLIT+YLKEKL+EWL K + LL+DEL        F F SL  +KK+ +KNP ++V
Sbjct: 356  ILVPGHLITVYLKEKLEEWLRKCKSLLKDELHNTSSKSKFSFESLADVKKLFNKNPPRSV 415

Query: 2709 GMAVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSV 2530
            GM++E +LKTGR+ TQSGLDLQQ  G TV AERLNFLRF+S FR+VHRGASFAG R T+V
Sbjct: 416  GMSIETLLKTGRMNTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTV 475

Query: 2529 RKLLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTG 2350
            RKLLPE+WGFLCPVHTPDGEPCGLLNHMT T RITS FDS+G ++D LK+R S++ VL G
Sbjct: 476  RKLLPESWGFLCPVHTPDGEPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVEVLIG 535

Query: 2349 IGMTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEV 2170
             GM  SLPK+V+A PPEV+ VLLDG V+G++SS +V   VS+LRRLK+   S IPEDLEV
Sbjct: 536  AGMVSSLPKLVQAAPPEVIHVLLDGQVVGTLSSNLVTNVVSYLRRLKIEAPSVIPEDLEV 595

Query: 2169 GYVPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGN 1990
            GYVP S GG+YPGLYL + P+RF+RPV+NIS+PS+   +IELIGPFEQ +MEI CPDGGN
Sbjct: 596  GYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSE---SIELIGPFEQVFMEISCPDGGN 652

Query: 1989 GGRRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRA 1810
            GGR +  PATHEEIHPTG++SVVANLTP+SDHNQSPRNMYQCQMAKQTMA+S+QA+QFRA
Sbjct: 653  GGRNNSCPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRA 712

Query: 1809 DQKLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERG 1630
            DQK+YHLQTPQ+P+VRT  Y  Y+IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSVERG
Sbjct: 713  DQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERG 772

Query: 1629 MFHGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYY 1450
            M HG IYQ ENIDL DQ    D   + F RS TDKS HS+IDADGLPYVGQ + P+EPYY
Sbjct: 773  MCHGQIYQTENIDLSDQNSRYDSGHKSFRRSTTDKSDHSTIDADGLPYVGQKIYPDEPYY 832

Query: 1449 STHNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRH 1270
            S ++ V N  +T   KG++ VIVD+V+VD ++K K PQK NIRFR  RNP+IGDKFSSRH
Sbjct: 833  SIYDEVTNRIRTIKRKGTDPVIVDFVSVDMKSK-KHPQKANIRFRHARNPIIGDKFSSRH 891

Query: 1269 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVD 1090
            GQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTI MLLESIAAKGGSL+GK+VD
Sbjct: 892  GQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVD 951

Query: 1089 ATPFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGP 913
            ATPF  AV  A GE+   S   VD+LG +L   GFNY+G E LYSG+LG EL CEIF+GP
Sbjct: 952  ATPFRNAVINANGEKKRKSSLLVDDLGSMLKEKGFNYYGTEKLYSGILGVELECEIFMGP 1011

Query: 912  VYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHD 733
            VYYQRLRHMVSDKFQVRSTG VDQ+T QP          RFGEMERD++LAHGA+YLLHD
Sbjct: 1012 VYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHD 1071

Query: 732  RLHTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCHACKTSKGM 556
            RLHT SDHHIADVCSLCGS+LT++I     KK ++  G LPPG  PKKVTC++CKTSKGM
Sbjct: 1072 RLHTSSDHHIADVCSLCGSLLTSSIANVQQKKLIQVTGKLPPGRTPKKVTCYSCKTSKGM 1131

Query: 555  ETVAMPYVFKYLAAELAAMNVKMTLQLSNGAG 460
            ETVAMPYVF+YLAAELA+MN+KMTL+LS+  G
Sbjct: 1132 ETVAMPYVFRYLAAELASMNIKMTLKLSDREG 1163


>ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
            gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2
            [Arabidopsis thaliana]
          Length = 1178

 Score = 1559 bits (4036), Expect = 0.0
 Identities = 772/1170 (65%), Positives = 931/1170 (79%), Gaps = 6/1170 (0%)
 Frame = -2

Query: 3951 PNLESLRELFK---PHIESFDYLVESGIQTLLLNIQPVEIYDPFTRKTLRISFGDHELYP 3781
            P +E  +EL      HIESFDY+   G+  +   I+PV +YDP T   L I   +  ++ 
Sbjct: 11   PTMEDFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFA 70

Query: 3780 PQKDRGNKTFRSA-LFPYECRQAGSTYAGKFLVEVCFQYGNNFAIKEKFGFGNLPIMLKS 3604
            PQK+    T R   L P+ECRQA  +Y G F+ +VCF+Y +   +++KF FG  PIML S
Sbjct: 71   PQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMS 130

Query: 3603 KICHLRGAGTWQLLSYKEESTEMGGYFILNGLERLVRLLIMQKRNYPVSVIRQSFRERQE 3424
            K+C L+GA   +LL  KE ++EMGGYFILNG+ER+ R +I  KRN+P S+IR SFR+R+E
Sbjct: 131  KLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKE 190

Query: 3423 GFTDKAVTIRCVRDDQSSVNNRLYYLQNGSARLGFWIRGKEFLLPVGVALKALIDTNDLE 3244
            G++ KAV  RCVRDDQSSV  +LYYL+NGSAR+GFWI G+E+LLPVG+ LKAL ++ D E
Sbjct: 191  GYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEE 250

Query: 3243 IYASLTCSYYEEHQGGKGAVGTQLVGERVRIILDEVRDLSLSTHLQCLQHIGEYFQPVMD 3064
            IY SL C Y E +  G GA+GTQLV ER +IILDEVRDL L T  QC +H+G++FQPV+D
Sbjct: 251  IYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLD 310

Query: 3063 GLETKSHSYVGSSVLKDYIFVHLQNNDDKFNLLIFMLQKLFALVDHTAAPDNMDALQNQE 2884
            G++ +S S V  +VL+DY+FVHL N+ DKFNLLIF++QKL++LVD T+ PDN D+LQNQE
Sbjct: 311  GVKKESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQE 370

Query: 2883 VLLPGHLITIYLKEKLQEWLYKARRLLQDELQKKGKDFDFLSLVHIKKVLDKNPSKNVGM 2704
            +L+PGH+ITIYLKEKL+EWL K + LL+DEL      F F SL  +KK+++KNP +++G 
Sbjct: 371  ILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGT 430

Query: 2703 AVENMLKTGRLITQSGLDLQQSGGMTVVAERLNFLRFISHFRSVHRGASFAGQRNTSVRK 2524
            ++E +LKTG L TQSGLDLQQ  G TV AERLNFLRF+S FR+VHRGASFAG R T+VRK
Sbjct: 431  SIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRK 490

Query: 2523 LLPEAWGFLCPVHTPDGEPCGLLNHMTSTCRITSFFDSQGIVKDSLKMRLSILSVLTGIG 2344
            LLPE+WGFLCPVHTPDG PCGLLNHMT T RITS FDS+G ++D LK+R S++ VLTG G
Sbjct: 491  LLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAG 550

Query: 2343 MTPSLPKIVRAGPPEVLSVLLDGCVIGSISSEIVEKAVSHLRRLKLSPISGIPEDLEVGY 2164
            M PSLPK+VRAGPP+V+ VLLDG V+G++SS +V K VS++RRLK+   S IPEDLEVGY
Sbjct: 551  MVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGY 610

Query: 2163 VPLSFGGAYPGLYLFTSPSRFLRPVRNISVPSDGSLNIELIGPFEQAYMEIRCPDGGNGG 1984
            VP S GG+YPGLYL + P+RF+RPV+NIS+PSD   NIELIGPFEQ +MEI CPDGGNGG
Sbjct: 611  VPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVFMEISCPDGGNGG 667

Query: 1983 RRDGFPATHEEIHPTGILSVVANLTPFSDHNQSPRNMYQCQMAKQTMAFSSQAIQFRADQ 1804
            R +   ATHEEIHPTG++SVVANLTP+SDHNQSPRNMYQCQMAKQTMA+S+QA+QFRADQ
Sbjct: 668  RNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQ 727

Query: 1803 KLYHLQTPQTPIVRTAAYKEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMF 1624
            K+YHLQTPQ+P+VRT  Y  Y+IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSVERGM 
Sbjct: 728  KIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMC 787

Query: 1623 HGTIYQVENIDLEDQKEHSDQAQRLFARSNTDKSTHSSIDADGLPYVGQMLRPNEPYYST 1444
            HG IYQ ENIDL DQ    D   + F RS T+K+ H  IDADGLP VGQ L P+EPY S 
Sbjct: 788  HGQIYQTENIDLSDQNSRFDSGSKSFRRS-TNKAEHFRIDADGLPSVGQKLYPDEPYCSI 846

Query: 1443 HNTVNNTTKTFALKGSETVIVDYVAVDGRNKQKPPQKVNIRFRRPRNPVIGDKFSSRHGQ 1264
            ++ V N T+    KG++ VIVD+V+VD ++K K PQ+ NIRFR  RNP+IGDKFSSRHGQ
Sbjct: 847  YDEVTNKTRHMKRKGTDPVIVDFVSVDMKSK-KHPQRANIRFRHARNPIIGDKFSSRHGQ 905

Query: 1263 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLNGKYVDAT 1084
            KGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTI MLLESIAAKGGSL+GK+VDAT
Sbjct: 906  KGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDAT 965

Query: 1083 PFPGAVKKA-GEESSLSDSRVDELGPLLASYGFNYHGLEVLYSGVLGTELTCEIFIGPVY 907
            PF  AVKK  GEE S S   VD+LG +L   GFN++G E LYSG LG EL CEIF+GPVY
Sbjct: 966  PFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVY 1025

Query: 906  YQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXRFGEMERDAMLAHGAAYLLHDRL 727
            YQRLRHMVSDKFQVRSTG VDQ+T QP          RFGEMERD++LAHGA+YLLHDRL
Sbjct: 1026 YQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRL 1085

Query: 726  HTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCHACKTSKGMET 550
            HT SDHHIADVCSLCGS+LT++++    KK ++EIG LPPG  PKKVTC++CKTSKGMET
Sbjct: 1086 HTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMET 1145

Query: 549  VAMPYVFKYLAAELAAMNVKMTLQLSNGAG 460
            VAMPYVF+YLAAELA+MN+KMTLQLS+  G
Sbjct: 1146 VAMPYVFRYLAAELASMNIKMTLQLSDREG 1175