BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00007073
         (2677 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   823   0.0  
ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron sp...   757   0.0  
ref|XP_002516757.1| conserved hypothetical protein [Ricinus comm...   748   0.0  
ref|XP_007217313.1| hypothetical protein PRUPE_ppa016241mg [Prun...   731   0.0  
ref|XP_006603055.1| PREDICTED: chloroplastic group IIA intron sp...   725   0.0  
ref|XP_007033218.1| maize chloroplast splicing factor CRS1, puta...   724   0.0  
ref|XP_007033217.1| maize chloroplast splicing factor CRS1, puta...   724   0.0  
ref|XP_006430740.1| hypothetical protein CICLE_v10013368mg [Citr...   723   0.0  
ref|XP_006603058.1| PREDICTED: chloroplastic group IIA intron sp...   721   0.0  
ref|XP_007033220.1| maize chloroplast splicing factor CRS1, puta...   720   0.0  
ref|XP_007033219.1| maize chloroplast splicing factor CRS1, puta...   720   0.0  
ref|XP_006603054.1| PREDICTED: chloroplastic group IIA intron sp...   719   0.0  
ref|XP_006357840.1| PREDICTED: chloroplastic group IIA intron sp...   718   0.0  
gb|EXC20503.1| Chloroplastic group IIA intron splicing facilitat...   709   0.0  
ref|XP_007033221.1| maize chloroplast splicing factor CRS1, puta...   703   0.0  
ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [A...   697   0.0  
ref|XP_004507538.1| PREDICTED: chloroplastic group IIA intron sp...   695   0.0  
ref|XP_002306656.2| hypothetical protein POPTR_0005s15420g [Popu...   692   0.0  
ref|XP_004233710.1| PREDICTED: chloroplastic group IIA intron sp...   688   0.0  
ref|XP_007139175.1| hypothetical protein PHAVU_008G007700g [Phas...   687   0.0  

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  823 bits (2125), Expect = 0.0
 Identities = 438/765 (57%), Positives = 549/765 (71%), Gaps = 11/765 (1%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLP 415
            S++P  + ++ T  T    +S  SQP +            T+ A+K+P APWM+GPLLL 
Sbjct: 40   SFKPPPISATTTATTNHPDHSISSQPVS-----------GTDAAIKMPTAPWMKGPLLLQ 88

Query: 416  GNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE 595
             NEVLDLS+AR KK  +    +E+ D SLTEKVSGGRG +AM++I++SI KLQE+  S+E
Sbjct: 89   PNEVLDLSKARPKK-VAGSAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQETHTSDE 147

Query: 596  TQKELEKFELRAPLGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETVL 775
            TQ+  E+FE    L  I  DE S    +MPW+  E++VFRR KKEKVVTAAEL+L   +L
Sbjct: 148  TQENTEEFEFGVSLEGIGGDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLL 207

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR +AV+M KWVKVKKAGVT ++VD I   W+ +ELAMVKF +PLCRNMDRAREI+E+
Sbjct: 208  ERLRGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEI 267

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSEDRTTTSC 1135
            KT GLV+WSKKD  VVYRG NY+S+ K  QK+        D S   +N    ED  T S 
Sbjct: 268  KTRGLVIWSKKDTLVVYRGSNYQSTSKHFQKMRPGLVAGADASNSKLNQSNFEDDLTISE 327

Query: 1136 KQQGEVT-------QDGKDSIHE---FIGENLELQSVCGTLYEREADRLLNGLGPRFVDW 1285
             +  E T       +DG++       F+ E ++ Q V G+LYEREADRLL+GLGPRF+DW
Sbjct: 328  IKFHESTTGEKMGRKDGEEDSSPTGIFMEEMVDSQPVNGSLYEREADRLLDGLGPRFIDW 387

Query: 1286 WWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNT 1465
            W PKPLP+DADLLPE +PGF  PFR  PP    KLTDDELT LRK A  LPTHF LGRN 
Sbjct: 388  WRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNR 447

Query: 1466 KLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRG 1645
            KLQGLA A++KLWEKSLI KIA+K GIPNT +E MA ELK LTGGVL+LRNKFFII YRG
Sbjct: 448  KLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRG 507

Query: 1646 KDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYIK 1822
            KDFLP  VANL+V+RE E + CQ+REE AR K I++    ++ +A +S+ GT SEFQ I+
Sbjct: 508  KDFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIE 567

Query: 1823 TKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAE 2002
            T++    +G  + ++++  EKERL+KEL+ QE  LFILKRKIE+SAK L KLNSAW+PA+
Sbjct: 568  TEFRGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPAD 627

Query: 2003 QSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKS 2182
              AD+E+ITEEER+C RKIG KM+  L+LGRRG+FDGV+  +H HWKHREIVKVITMQ+S
Sbjct: 628  HDADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRS 687

Query: 2183 LSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRS 2362
             SQV  TA+ LE ESGG++++++ ++ GHAIIIYRGKNY+RP+ L P NLL K+ AL RS
Sbjct: 688  FSQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRS 747

Query: 2363 LEMQRIGSLKFFAYQRQRRISNXXXXXXDLQDRDEEAVLKECRKF 2497
            LEMQRIGSLKFFAYQRQ+ IS+      DLQ        +E  KF
Sbjct: 748  LEMQRIGSLKFFAYQRQQAISDLKLKLADLQKGSRRIDQRESEKF 792


>ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568857343|ref|XP_006482226.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 771

 Score =  757 bits (1954), Expect = 0.0
 Identities = 406/753 (53%), Positives = 530/753 (70%), Gaps = 18/753 (2%)
 Frame = +2

Query: 254  VQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVK-VPNAPWMQGPLLLPGNEVL 430
            +QS    +  S+ N  ++ P   K   L D  LS N  +K +P APWM+ P++L  +E++
Sbjct: 17   LQSHSFSVICSSSNPNQNSPKTLK---LPDIKLSPNAPIKKMPTAPWMRSPIVLQPDEII 73

Query: 431  DLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQKE- 607
              S+ + KK        ++TD  LT K SG RG++AM++I+E+I KLQ+ +  +ETQK+ 
Sbjct: 74   KPSKPKTKKS------FKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKV 127

Query: 608  LEKFELRAPLGLICEDEKSNSEP--------RMPWMSQERIVFRRIKKEKVVTAAELSLS 763
            +EKFE +      C +E  + E         ++PW+ ++R VFRR+KKE++VT AE  L 
Sbjct: 128  MEKFEFKG-----CFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMKKERMVTKAETMLD 182

Query: 764  ETVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRARE 943
              +L+RL+++A +M KWVKVKKAGVT ++V  I+  WR NELAMVKF +PLCRNMDRARE
Sbjct: 183  GELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRARE 242

Query: 944  IIELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSED-- 1117
            I+ELKTGGLV+W+KKD HVVYRG + +SS+K+C +   ++   +  S  H++L K  +  
Sbjct: 243  ILELKTGGLVIWTKKDAHVVYRGDSSKSSVKMCPRSADDQEAPLSKS-THLHLEKKVNVS 301

Query: 1118 --RTTTSCKQQGEVTQDGKDS---IHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
              ++ T+   Q    +DG+++      F+ +NL +     +LYERE DRLL+GLGPRFVD
Sbjct: 302  WIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDK---SLYEREGDRLLDGLGPRFVD 358

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLP+D DLLPE VPGF  PFR  PP    KLTDDELT LRK A  LPTHF LGRN
Sbjct: 359  WWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRN 418

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSL+AKI VK GIPNT++E MA ELK LTGGVL+LRNKF II YR
Sbjct: 419  RGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKHLTGGVLLLRNKFLIILYR 478

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSS-SGTFSEFQYI 1819
            G DFLP GV NL+V+RE+EL+ CQ  EEGAR K I++FH  +E + ++S +GT SEFQ I
Sbjct: 479  GNDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPHEPLEKTSKAGTLSEFQNI 538

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            ++ +G    G  + ++Q+  E E L++ELR QE KLFIL  KIEKSAKEL +LNSAWKP 
Sbjct: 539  QSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLFILNIKIEKSAKELSRLNSAWKPR 598

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEERQCL KIG+KMN  L+LGRRG+FDGV+  +H HWK+RE+ +VIT QK
Sbjct: 599  EQDPDLEMITEEERQCLHKIGMKMNSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQK 658

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              +QV  TA+ L  ESGGI+I+V+ ++ GHAIIIYRGKNY+RPL L   NLL K+ AL R
Sbjct: 659  LFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRR 718

Query: 2360 SLEMQRIGSLKFFAYQRQRRISNXXXXXXDLQD 2458
            SLEMQR+GSLKFFAYQRQR ISN      +LQ+
Sbjct: 719  SLEMQRLGSLKFFAYQRQRVISNLKIKLAELQE 751


>ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
            gi|223544130|gb|EEF45655.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 742

 Score =  748 bits (1930), Expect = 0.0
 Identities = 412/764 (53%), Positives = 522/764 (68%), Gaps = 20/764 (2%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADT---LLS-----TNDAVKVPNAPW 391
            SY P+      + + P+T  S  +   NPKF+   +T   LLS     +N  +KVP APW
Sbjct: 11   SYNPIA-----SSLNPATNKSSLNNAQNPKFATNKNTEFTLLSVPNSQSNAPIKVPTAPW 65

Query: 392  MQGPLLLPGNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKL 571
            M+GPLLL  +E+++LS+ RNK   S     E++D  LT K SG RG++AM +IV+SI +L
Sbjct: 66   MKGPLLLQPHELINLSKPRNKNS-SNNANIEKSDKVLTGKESGVRGKKAMEKIVKSIEQL 124

Query: 572  QE----------SRNSEETQKELEKFELRAPLGLICEDEKSNSEPRM-PWMSQERIVFRR 718
            QE          S+  E+TQ + E FE+   LGLI E        ++ PW  +E+ V+ R
Sbjct: 125  QENQALEKTQCDSQAYEKTQLDSEAFEIGEKLGLIREHGDFGVNKKLKPWEREEKFVYWR 184

Query: 719  IKKEKVVTAAELSLSETVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMV 898
            IKKEK VT AEL L + +L+ LR +A +M KWVKV KAGVT ++VD I+  WR NELAMV
Sbjct: 185  IKKEKAVTKAELILEKELLEILRTEASKMRKWVKVMKAGVTQSVVDQIRYAWRNNELAMV 244

Query: 899  KFYLPLCRNMDRAREIIELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVID 1078
            KF LPLCRNMDRAREI+ELKTGGLVVW++KD  V+YRGCNY                   
Sbjct: 245  KFDLPLCRNMDRAREIVELKTGGLVVWTRKDSLVIYRGCNY------------------- 285

Query: 1079 TSPVHVNLVKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLN 1258
                  +L KS   +T   K   +  ++       FIG++    ++ G+L+ERE DRLL+
Sbjct: 286  ------HLTKSSHVSTMDEKIGSKDGEEEYIPTSIFIGDDANTPTINGSLFERETDRLLD 339

Query: 1259 GLGPRFVDWWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLP 1438
            GLGPRFVDWW  KPLP+DADLLPE V GFM P R    +   KL DDELT LRK A  LP
Sbjct: 340  GLGPRFVDWWMRKPLPVDADLLPEVVAGFMPPSRF--HYARAKLKDDELTYLRKLAYALP 397

Query: 1439 THFALGRNTKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRN 1618
            THF LGRN +LQGLA A++KLWE+SLIAKIAVK GIPNT++E MA ELK LTGGVL+LRN
Sbjct: 398  THFVLGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLRN 457

Query: 1619 KFFIIFYRGKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-G 1795
            KFFII +RGKDFLP  VA+LVV RE EL+ CQL EEGAR K I++    +E V +++  G
Sbjct: 458  KFFIILFRGKDFLPCQVADLVVKRENELKICQLNEEGARLKAIETSFTDDELVVKATKIG 517

Query: 1796 TFSEFQYIKTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLK 1975
            T +EFQ I+ ++     G  DS +Q+  EKE+L++ELRIQEHKL ILK KIEKSA+EL K
Sbjct: 518  TLNEFQDIQVRFKELAKGYRDSKLQLEAEKEKLERELRIQEHKLLILKSKIEKSARELSK 577

Query: 1976 LNSAWKPAEQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREI 2155
            LNSAW PA+Q AD E++TEEER+CLRKIGLKM   L+LGRRG+FDGV+  +H HWKHRE+
Sbjct: 578  LNSAWAPADQDADLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREV 637

Query: 2156 VKVITMQKSLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLL 2335
            VKVI++Q+  +QV  TA+ LE E+GGI+++++ ++ GHAIIIYRGKNY+RP  L   NLL
Sbjct: 638  VKVISLQRMFAQVIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLL-NNLL 696

Query: 2336 KKKAALCRSLEMQRIGSLKFFAYQRQRRISNXXXXXXDLQDRDE 2467
             K+ ALCRSLEMQRIGSL+FFAYQRQ  I         LQ+ +E
Sbjct: 697  TKRKALCRSLEMQRIGSLRFFAYQRQHSIRELKFQLAQLQESEE 740


>ref|XP_007217313.1| hypothetical protein PRUPE_ppa016241mg [Prunus persica]
            gi|462413463|gb|EMJ18512.1| hypothetical protein
            PRUPE_ppa016241mg [Prunus persica]
          Length = 809

 Score =  731 bits (1888), Expect = 0.0
 Identities = 402/761 (52%), Positives = 514/761 (67%), Gaps = 34/761 (4%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLP 415
            S  P  +  S T  TP++K      PS P  S        T+  +K P APWM+GPLLL 
Sbjct: 54   SKSPNSLSLSSTTTTPNSK-----APSEPNSS--------TDACIKAPTAPWMKGPLLLQ 100

Query: 416  GNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE 595
             +EV+D S+ RNKK  +  + +E+ D  L  K+ G RG +A+++IV+SI +L  ++ ++E
Sbjct: 101  PHEVIDFSKPRNKKTHNNAK-AEKPDTVLAGKLVGIRGDKAIKQIVQSIERLGPNQKTDE 159

Query: 596  TQKELEKFELRAPLGLICEDEK-------------------------SNSEPRMPWMSQE 700
            TQK   +F +   L  + ++EK                         S    +MPW   E
Sbjct: 160  TQKGFGEFRIWDSLEGLGQNEKWDETHKDFVEFGIGGCLEGLGKAADSRFGGKMPWERDE 219

Query: 701  RIVFRRIKKEKVVTAAELSLSETVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRE 880
            RIVF+RIKK++V +AAELSL + +L+RLR +A +M KWVKVKKAGVT AIVD IK  W+ 
Sbjct: 220  RIVFQRIKKKRVASAAELSLEKELLERLRAEAAKMRKWVKVKKAGVTQAIVDDIKFIWKT 279

Query: 881  NELAMVKFYLPLCRNMDRAREIIELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIH-- 1054
            NELAMVKF +PLCRNM RA+EI+E KTGG+VVW KKD  V+YRGCNY+SS K   K+   
Sbjct: 280  NELAMVKFDVPLCRNMHRAQEIVETKTGGMVVWGKKDTLVIYRGCNYQSSSKFFPKMRPC 339

Query: 1055 -SERAHVIDTSPVHVNLVKSEDRTTTSCKQQGEVTQDGKDSIHEFIGE------NLELQS 1213
             ++R   + +  +  +L ++      S +   +     KD+  + I        ++  Q 
Sbjct: 340  SADRQETLSSDHMQPDLEENSSYQYKSFESPVDEKMSRKDAEEDCIQSGTFQETSMSCQP 399

Query: 1214 VCGTLYEREADRLLNGLGPRFVDWWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLT 1393
               +LYE+EADRLL+GLGPRF+DWW  KPLP+DADLLPE VPGF  P RRCPPH   KLT
Sbjct: 400  TSRSLYEKEADRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPHTRSKLT 459

Query: 1394 DDELTNLRKFARYLPTHFALGRNTKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMA 1573
            DDELT LRKFAR LPTHF LGRN KLQGLA A++KLWEKSLIAKIAVK G+PNTN+E MA
Sbjct: 460  DDELTFLRKFARSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIAVKFGVPNTNNEQMA 519

Query: 1574 QELKRLTGGVLILRNKFFIIFYRGKDFLPSGVANLVVDREKELERCQLREEGARWKPIKS 1753
             EL+     VLILRNKF I+ YRGKDFLP GVA+LV  RE EL R QL EE AR K I++
Sbjct: 520  YELR---ARVLILRNKFIILLYRGKDFLPCGVADLVAKREVELTRWQLYEEHARQKAIET 576

Query: 1754 FHAINETVARSSSGTFSEFQYIKTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFI 1933
            F    E +  ++ GT SEFQ I+T+YG      ++ +I++  EKE+L++ELR QE K FI
Sbjct: 577  FCESGEPLV-NTVGTLSEFQDIQTEYGELIKENKNVEIKLEAEKEQLERELRNQERKFFI 635

Query: 1934 LKRKIEKSAKELLKLNSAWKPAEQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDG 2113
            L +KIEKS  EL KLNS   PAEQ  D+E++TEEE++CLR +GLKM+  L+LGRRG+F+G
Sbjct: 636  LNKKIEKSTNELSKLNSQRTPAEQDVDQEMMTEEEKECLRTVGLKMHSCLVLGRRGVFNG 695

Query: 2114 VVGSMHLHWKHREIVKVITMQKSLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGK 2293
            V+  +H HWKHRE+VKVITMQK   QV  TA+ LE ESGGI+++V+ ++ GHAIIIYRGK
Sbjct: 696  VMEGLHQHWKHREVVKVITMQKLFRQVMHTAKLLEAESGGILVSVDKLKEGHAIIIYRGK 755

Query: 2294 NYQRPLNLWPGNLLKKKAALCRSLEMQRIGSLKFFAYQRQR 2416
            NY+RPL    GNLL K+ AL RSLEMQRIGSLKFFA QRQ+
Sbjct: 756  NYRRPLMPTGGNLLSKRKALHRSLEMQRIGSLKFFASQRQQ 796


>ref|XP_006603055.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Glycine max]
            gi|571550194|ref|XP_006603056.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Glycine max]
            gi|571550197|ref|XP_006603057.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Glycine max]
          Length = 747

 Score =  725 bits (1872), Expect = 0.0
 Identities = 397/749 (53%), Positives = 518/749 (69%), Gaps = 5/749 (0%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLP 415
            SY    + SS   + P++ N    Q ++P           +   +K P  PWM+ PLLL 
Sbjct: 14   SYSRFHISSS---LPPNSNNGHNHQHTSP-----------SQVPIKSPTPPWMKVPLLLQ 59

Query: 416  GNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE 595
             +E++DLS  ++KK K   E+ E +D +L  K    RG+RAM++IV+ + KL +++NS E
Sbjct: 60   PHELVDLSNPKSKKFKP--EKHELSDKALMGKEV--RGKRAMKKIVDRVEKLHKTQNSNE 115

Query: 596  TQKELEKFE-LRAPLGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETV 772
            T+ +    E     L ++ E+E+  S+ RMPW   E+  F ++K+EK VTAAEL+L + +
Sbjct: 116  TRVDSLNVENFGGYLEILKENEEVRSKGRMPWEKDEKFGFVKVKREKAVTAAELTLDKAL 175

Query: 773  LKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIE 952
            L+RLRN+A RM  W+KVKKAGVT  +VD IKRTWR NELAM+KF +PLCRNMDRAREI+E
Sbjct: 176  LRRLRNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVE 235

Query: 953  LKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKI---HSERAHVIDTSPVHVNLVKSEDRT 1123
             KTGGLVV SKKD  VVYRGCN++ + K    +   H E   V   +   +  V+S    
Sbjct: 236  TKTGGLVVLSKKDFLVVYRGCNHQLTTKGSPSLRTNHYEMNRVELATKGDIFRVESNH-- 293

Query: 1124 TTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPL 1303
              S  +      D KDSI   I +++  Q V G+LYERE +RLL+GLGPRF+DWW  KPL
Sbjct: 294  --SSSEMLNWNADHKDSISTGI-QDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPL 350

Query: 1304 PIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLA 1483
            P+DADLLPE VPGF  PFR CPPH   KLTD ELT  RK A+ LPTHF LGRN  L+GLA
Sbjct: 351  PVDADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLA 410

Query: 1484 NAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPS 1663
            +A++KLWEKSLIAKIA+K GIPNT++E+MA ELK LTGGVL+LRNKF+I+ YRG DFLP 
Sbjct: 411  SAILKLWEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPR 470

Query: 1664 GVANLVVDREKELERCQLREEGARWKPIKSFHAINET-VARSSSGTFSEFQYIKTKYGIF 1840
             VA+LV  RE EL+  QL EE AR K I++F  I+E  +  S+SGT +EF+ I+TK    
Sbjct: 471  SVASLVEKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDT 530

Query: 1841 CNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADRE 2020
             +   DS+IQ+  E  RL+KEL+ ++ + FIL +KI++S +EL KLN+AW P+EQ  D E
Sbjct: 531  KSVNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLE 590

Query: 2021 VITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVND 2200
            ++T+EER+C RKIGLKM   L+LGRRGIFDGV+  +H HWKHRE+VKVITMQK  SQV +
Sbjct: 591  IMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVIN 650

Query: 2201 TARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRI 2380
            TA+ LE ESGGI+++V+ ++ GHAIIIYRGKNY+RP      NLL K+ AL RSLEMQRI
Sbjct: 651  TAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRI 710

Query: 2381 GSLKFFAYQRQRRISNXXXXXXDLQDRDE 2467
            GS+KFFA+QR++ IS       DLQ + E
Sbjct: 711  GSMKFFAHQREQAISELEVKLADLQQKKE 739


>ref|XP_007033218.1| maize chloroplast splicing factor CRS1, putative isoform 2 [Theobroma
            cacao] gi|508712247|gb|EOY04144.1| maize chloroplast
            splicing factor CRS1, putative isoform 2 [Theobroma
            cacao]
          Length = 804

 Score =  724 bits (1869), Expect = 0.0
 Identities = 392/754 (51%), Positives = 525/754 (69%), Gaps = 15/754 (1%)
 Frame = +2

Query: 245  PLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNE 424
            P     + ++    T    RS  +N KFS   D     N  +K+P APWM+GPLLL  +E
Sbjct: 50   PFSSSLNSSQNPSKTHKENRSLNNNSKFSVSKDP---NNGPIKMPTAPWMKGPLLLQPHE 106

Query: 425  VLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK 604
            VL+ S++ +KK  S   +++  D +L  K SG RG++ M++I+ ++  LQ +   E+TQ 
Sbjct: 107  VLNPSKSTSKK--SSNSKAKAPDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQI 164

Query: 605  EL-EKFELRAPLGLICED-EKSNSEPRMPWM-SQERIVFRRIKKEKVVTAAELSLSETVL 775
             + E+FE+   L     D E    + +MPW+  +E++VFRR+KKEK++T AE+SL + +L
Sbjct: 165  GIREEFEVGNWLEEFGSDGEVKRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLL 224

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR  A+RM KW+KV K GVT A+VD IK  WR+NEL MVKF +PLCRNMDRAREIIE+
Sbjct: 225  ERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEM 284

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVC----------QKIHSER-AHVIDTSPVHVNL 1102
            KT GLVVW KKD  VVYRGC++  + K+           Q+I S   +H+  ++ ++++L
Sbjct: 285  KTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSL 344

Query: 1103 VKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
             K    T  S   + +  ++    I+ F+ E+   Q V G+LYERE DRLL+GLGPRF+D
Sbjct: 345  EKFNGSTLQSGLYREDREKESMP-INIFMKEDENNQPVIGSLYERETDRLLDGLGPRFID 403

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLPIDADLLPE VPGF  P R  PP+  P LTDDEL  LRK    LP HFALG+N
Sbjct: 404  WWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKN 463

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSLIAKIA+K GI NT++E MA ELK LTGGVL++RNKF +I YR
Sbjct: 464  RNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYR 523

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYI 1819
            GKDFLP GVANLVV+RE  L RCQL EEGAR K  ++    +E +A++S+ GT SEF+ I
Sbjct: 524  GKDFLPQGVANLVVEREMALRRCQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDI 583

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            +T++G     + + ++Q+  +KE L++ELR QE KL IL  KIEKSAKEL KL S+ +PA
Sbjct: 584  QTRFGDLKKESSELELQLEAQKENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPA 643

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEER+CLRKIGLK+N  L+LGRRG+F+GV+  ++ HWKHRE+VKVITMQ+
Sbjct: 644  EQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQR 703

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              ++V  TA+ L  E+GGI+++VE ++ GHA+IIYRGKNY+RPL L   NLL K+ AL +
Sbjct: 704  VFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQ 763

Query: 2360 SLEMQRIGSLKFFAYQRQRRISNXXXXXXDLQDR 2461
            S+E+QRIGSLKFFAYQR++ I +      +L+DR
Sbjct: 764  SIELQRIGSLKFFAYQRRQAILDLKLKLAELKDR 797


>ref|XP_007033217.1| maize chloroplast splicing factor CRS1, putative isoform 1 [Theobroma
            cacao] gi|508712246|gb|EOY04143.1| maize chloroplast
            splicing factor CRS1, putative isoform 1 [Theobroma
            cacao]
          Length = 818

 Score =  724 bits (1869), Expect = 0.0
 Identities = 392/754 (51%), Positives = 525/754 (69%), Gaps = 15/754 (1%)
 Frame = +2

Query: 245  PLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNE 424
            P     + ++    T    RS  +N KFS   D     N  +K+P APWM+GPLLL  +E
Sbjct: 50   PFSSSLNSSQNPSKTHKENRSLNNNSKFSVSKDP---NNGPIKMPTAPWMKGPLLLQPHE 106

Query: 425  VLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK 604
            VL+ S++ +KK  S   +++  D +L  K SG RG++ M++I+ ++  LQ +   E+TQ 
Sbjct: 107  VLNPSKSTSKK--SSNSKAKAPDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQI 164

Query: 605  EL-EKFELRAPLGLICED-EKSNSEPRMPWM-SQERIVFRRIKKEKVVTAAELSLSETVL 775
             + E+FE+   L     D E    + +MPW+  +E++VFRR+KKEK++T AE+SL + +L
Sbjct: 165  GIREEFEVGNWLEEFGSDGEVKRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLL 224

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR  A+RM KW+KV K GVT A+VD IK  WR+NEL MVKF +PLCRNMDRAREIIE+
Sbjct: 225  ERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEM 284

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVC----------QKIHSER-AHVIDTSPVHVNL 1102
            KT GLVVW KKD  VVYRGC++  + K+           Q+I S   +H+  ++ ++++L
Sbjct: 285  KTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSL 344

Query: 1103 VKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
             K    T  S   + +  ++    I+ F+ E+   Q V G+LYERE DRLL+GLGPRF+D
Sbjct: 345  EKFNGSTLQSGLYREDREKESMP-INIFMKEDENNQPVIGSLYERETDRLLDGLGPRFID 403

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLPIDADLLPE VPGF  P R  PP+  P LTDDEL  LRK    LP HFALG+N
Sbjct: 404  WWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKN 463

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSLIAKIA+K GI NT++E MA ELK LTGGVL++RNKF +I YR
Sbjct: 464  RNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYR 523

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYI 1819
            GKDFLP GVANLVV+RE  L RCQL EEGAR K  ++    +E +A++S+ GT SEF+ I
Sbjct: 524  GKDFLPQGVANLVVEREMALRRCQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDI 583

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            +T++G     + + ++Q+  +KE L++ELR QE KL IL  KIEKSAKEL KL S+ +PA
Sbjct: 584  QTRFGDLKKESSELELQLEAQKENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPA 643

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEER+CLRKIGLK+N  L+LGRRG+F+GV+  ++ HWKHRE+VKVITMQ+
Sbjct: 644  EQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQR 703

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              ++V  TA+ L  E+GGI+++VE ++ GHA+IIYRGKNY+RPL L   NLL K+ AL +
Sbjct: 704  VFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQ 763

Query: 2360 SLEMQRIGSLKFFAYQRQRRISNXXXXXXDLQDR 2461
            S+E+QRIGSLKFFAYQR++ I +      +L+DR
Sbjct: 764  SIELQRIGSLKFFAYQRRQAILDLKLKLAELKDR 797


>ref|XP_006430740.1| hypothetical protein CICLE_v10013368mg [Citrus clementina]
            gi|557532797|gb|ESR43980.1| hypothetical protein
            CICLE_v10013368mg [Citrus clementina]
          Length = 770

 Score =  723 bits (1867), Expect = 0.0
 Identities = 389/724 (53%), Positives = 508/724 (70%), Gaps = 26/724 (3%)
 Frame = +2

Query: 293  NSERSQPSNPKFSFLADTLLSTNDAVK-VPNAPWMQGPLLLPGNEVLDLSRARNKKGKSR 469
            +S     ++PK   L D  LS N  +K +P APWM+ P++L  +E++  S+ + KK    
Sbjct: 33   SSSNPNQNSPKTLKLPDIKLSPNAPIKKMPTAPWMRSPIVLQPDEIIKPSKPKTKKS--- 89

Query: 470  GEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK-ELEKFELRAPL--- 637
                ++TD  LT K SG RG++AM++I+E+I KLQ+ +  +ETQK ++EKFE R      
Sbjct: 90   ---FKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKDMEKFEFRGCFEEN 146

Query: 638  GLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETVLKRLRNDAVRMTKWV 817
            G   ED +     ++PW+ +ER VFRR+KKE++VT AE  L   +++RL+++A +M KWV
Sbjct: 147  GSDEEDLRGGFGGKVPWLREERFVFRRMKKERMVTKAETMLDGELIERLKDEARKMRKWV 206

Query: 818  KVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIELKTGGLVVWSKKDIH 997
            KVKKAGVT ++V  I+  WR NELAMVKF +PLCRNMDRAREI+ELKTGGLV+W+KKD H
Sbjct: 207  KVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAH 266

Query: 998  VVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSED----RTTTSCKQQGEVTQDG 1165
            VVYRG   +SS+K+C +   ++   +  S  H++L K  +    ++ T+   Q    +DG
Sbjct: 267  VVYRGDGSKSSVKMCPRSADDQEAPLSKS-THLHLEKKVNVSWIKSNTATLDQNRSLKDG 325

Query: 1166 KDS---IHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPLPIDADLLPEFV 1336
            +++      F+ +NL +     +LYERE DRLL+GLGPRFVDWW  KPLP+D DLLPE V
Sbjct: 326  EENSLPTSIFMDKNLRIDK---SLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVV 382

Query: 1337 PGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLANAMIKLWEKSL 1516
            PGF  PFR  PP    KLTDDELT LRK A  LPTHF LGRN  LQGLA A++KLWEKSL
Sbjct: 383  PGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSL 442

Query: 1517 IAKIAVKLGIPNTNDELMAQELKR-------------LTGGVLILRNKFFIIFYRGKDFL 1657
            +AKIAVK GIPNT++E MA ELK              LTGGVL+LRNKF II YRGKDFL
Sbjct: 443  VAKIAVKWGIPNTDNEQMANELKNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFL 502

Query: 1658 PSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSS-SGTFSEFQYIKTKYG 1834
            P GV NL+V+RE+EL+ CQ  EEGAR K I++FH  +E + ++S +GT SEFQ I++ +G
Sbjct: 503  PCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG 562

Query: 1835 IFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSAD 2014
                G  + ++Q+  E E L++ELR QE KLFIL  KIEKSAKEL +LNSAWKP EQ  D
Sbjct: 563  DLKMGNREFELQLEAEIEDLERELRKQERKLFILNIKIEKSAKELSRLNSAWKPREQDPD 622

Query: 2015 REVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQV 2194
             E+ITEEERQCL KIG+K+N  L+LGRRG+FDGV+  +H HWK+RE+ +VIT QK  +QV
Sbjct: 623  LEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQV 682

Query: 2195 NDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQ 2374
              TA+ L  ESGGI+I+V+ ++ GHAIIIYRGKNY+RPL L   NLL K+ AL RSLEMQ
Sbjct: 683  IYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQ 742

Query: 2375 RIGS 2386
            R+G+
Sbjct: 743  RLGA 746


>ref|XP_006603058.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X5 [Glycine max]
          Length = 744

 Score =  721 bits (1861), Expect = 0.0
 Identities = 397/749 (53%), Positives = 518/749 (69%), Gaps = 5/749 (0%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLP 415
            SY    + SS   + P++ N    Q ++P           +   +K P  PWM+ PLLL 
Sbjct: 14   SYSRFHISSS---LPPNSNNGHNHQHTSP-----------SQVPIKSPTPPWMKVPLLLQ 59

Query: 416  GNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE 595
             +E++DLS  ++KK K   E+ E +D +L  K    RG+RAM++IV+ + KL +++NS E
Sbjct: 60   PHELVDLSNPKSKKFKP--EKHELSDKALMGKEV--RGKRAMKKIVDRVEKLHKTQNSNE 115

Query: 596  TQKELEKFE-LRAPLGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETV 772
            T+ +    E     L ++ E+E+  S+ RMPW   E+  F ++K+EK VTAAEL+L + +
Sbjct: 116  TRVDSLNVENFGGYLEILKENEEVRSKGRMPWEKDEKFGFVKVKREKAVTAAELTLDKAL 175

Query: 773  LKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIE 952
            L+RLRN+A RM  W+KVKKAGVT  +VD IKRTWR NELAM+KF +PLCRNMDRAREI+E
Sbjct: 176  LRRLRNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVE 235

Query: 953  LKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKI---HSERAHVIDTSPVHVNLVKSEDRT 1123
             KTGGLVV SKKD  VVYRGCN++ + K    +   H E   V   +   +  V+S    
Sbjct: 236  TKTGGLVVLSKKDFLVVYRGCNHQLTTKGSPSLRTNHYEMNRVELATKGDIFRVESNH-- 293

Query: 1124 TTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPL 1303
              S  +      D KDSI   I +++  Q V G+LYERE +RLL+GLGPRF+DWW  KPL
Sbjct: 294  --SSSEMLNWNADHKDSISTGI-QDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPL 350

Query: 1304 PIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLA 1483
            P+DADLLPE VPGF  PFR CPPH   KLTD ELT  RK A+ LPTHF LGRN  L+GLA
Sbjct: 351  PVDADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLA 410

Query: 1484 NAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPS 1663
            +A++KLWEKSLIAKIA+K GIPNT++E+MA ELK LTGGVL+LRNKF+I+ YRG DFLP 
Sbjct: 411  SAILKLWEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPR 470

Query: 1664 GVANLVVDREKELERCQLREEGARWKPIKSFHAINET-VARSSSGTFSEFQYIKTKYGIF 1840
             VA+LV  RE EL+  QL EE AR K I++F  I+E  +  S+SGT +EF+ I+TK    
Sbjct: 471  SVASLVEKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDT 530

Query: 1841 CNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADRE 2020
             +   DS+IQ+  E  RL+KEL+ ++ + FIL +KI++S +EL KLN+AW P+EQ  D E
Sbjct: 531  KSVNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLE 590

Query: 2021 VITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVND 2200
            ++T+EER+C RKIGLKM   L+LGRRGIFDGV+  +H HWKHRE+VKVITMQK  SQV +
Sbjct: 591  IMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVIN 650

Query: 2201 TARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRI 2380
            TA+ LE ESGGI+++V+ ++ GHAIIIYRGKNY+RP      NLL K+ AL RSLEMQRI
Sbjct: 651  TAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRI 710

Query: 2381 GSLKFFAYQRQRRISNXXXXXXDLQDRDE 2467
            GS+KFFA+QR++ IS       DLQ + E
Sbjct: 711  GSMKFFAHQREQAISE---LEADLQQKKE 736


>ref|XP_007033220.1| maize chloroplast splicing factor CRS1, putative isoform 4 [Theobroma
            cacao] gi|508712249|gb|EOY04146.1| maize chloroplast
            splicing factor CRS1, putative isoform 4 [Theobroma
            cacao]
          Length = 767

 Score =  720 bits (1858), Expect = 0.0
 Identities = 389/741 (52%), Positives = 519/741 (70%), Gaps = 15/741 (2%)
 Frame = +2

Query: 245  PLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNE 424
            P     + ++    T    RS  +N KFS   D     N  +K+P APWM+GPLLL  +E
Sbjct: 24   PFSSSLNSSQNPSKTHKENRSLNNNSKFSVSKDP---NNGPIKMPTAPWMKGPLLLQPHE 80

Query: 425  VLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK 604
            VL+ S++ +KK  S   +++  D +L  K SG RG++ M++I+ ++  LQ +   E+TQ 
Sbjct: 81   VLNPSKSTSKK--SSNSKAKAPDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQI 138

Query: 605  EL-EKFELRAPLGLICED-EKSNSEPRMPWM-SQERIVFRRIKKEKVVTAAELSLSETVL 775
             + E+FE+   L     D E    + +MPW+  +E++VFRR+KKEK++T AE+SL + +L
Sbjct: 139  GIREEFEVGNWLEEFGSDGEVKRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLL 198

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR  A+RM KW+KV K GVT A+VD IK  WR+NEL MVKF +PLCRNMDRAREIIE+
Sbjct: 199  ERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEM 258

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVC----------QKIHSER-AHVIDTSPVHVNL 1102
            KT GLVVW KKD  VVYRGC++  + K+           Q+I S   +H+  ++ ++++L
Sbjct: 259  KTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSL 318

Query: 1103 VKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
             K    T  S   + +  ++    I+ F+ E+   Q V G+LYERE DRLL+GLGPRF+D
Sbjct: 319  EKFNGSTLQSGLYREDREKESMP-INIFMKEDENNQPVIGSLYERETDRLLDGLGPRFID 377

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLPIDADLLPE VPGF  P R  PP+  P LTDDEL  LRK    LP HFALG+N
Sbjct: 378  WWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKN 437

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSLIAKIA+K GI NT++E MA ELK LTGGVL++RNKF +I YR
Sbjct: 438  RNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYR 497

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYI 1819
            GKDFLP GVANLVV+RE  L RCQL EEGAR K  ++    +E +A++S+ GT SEF+ I
Sbjct: 498  GKDFLPQGVANLVVEREMALRRCQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDI 557

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            +T++G     + + ++Q+  +KE L++ELR QE KL IL  KIEKSAKEL KL S+ +PA
Sbjct: 558  QTRFGDLKKESSELELQLEAQKENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPA 617

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEER+CLRKIGLK+N  L+LGRRG+F+GV+  ++ HWKHRE+VKVITMQ+
Sbjct: 618  EQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQR 677

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              ++V  TA+ L  E+GGI+++VE ++ GHA+IIYRGKNY+RPL L   NLL K+ AL +
Sbjct: 678  VFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQ 737

Query: 2360 SLEMQRIGSLKFFAYQRQRRI 2422
            S+E+QRIGSLKFFAYQR++ I
Sbjct: 738  SIELQRIGSLKFFAYQRRQAI 758


>ref|XP_007033219.1| maize chloroplast splicing factor CRS1, putative isoform 3 [Theobroma
            cacao] gi|508712248|gb|EOY04145.1| maize chloroplast
            splicing factor CRS1, putative isoform 3 [Theobroma
            cacao]
          Length = 788

 Score =  720 bits (1858), Expect = 0.0
 Identities = 389/741 (52%), Positives = 519/741 (70%), Gaps = 15/741 (2%)
 Frame = +2

Query: 245  PLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNE 424
            P     + ++    T    RS  +N KFS   D     N  +K+P APWM+GPLLL  +E
Sbjct: 24   PFSSSLNSSQNPSKTHKENRSLNNNSKFSVSKDP---NNGPIKMPTAPWMKGPLLLQPHE 80

Query: 425  VLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK 604
            VL+ S++ +KK  S   +++  D +L  K SG RG++ M++I+ ++  LQ +   E+TQ 
Sbjct: 81   VLNPSKSTSKK--SSNSKAKAPDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQI 138

Query: 605  EL-EKFELRAPLGLICED-EKSNSEPRMPWM-SQERIVFRRIKKEKVVTAAELSLSETVL 775
             + E+FE+   L     D E    + +MPW+  +E++VFRR+KKEK++T AE+SL + +L
Sbjct: 139  GIREEFEVGNWLEEFGSDGEVKRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLL 198

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR  A+RM KW+KV K GVT A+VD IK  WR+NEL MVKF +PLCRNMDRAREIIE+
Sbjct: 199  ERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEM 258

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVC----------QKIHSER-AHVIDTSPVHVNL 1102
            KT GLVVW KKD  VVYRGC++  + K+           Q+I S   +H+  ++ ++++L
Sbjct: 259  KTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSL 318

Query: 1103 VKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
             K    T  S   + +  ++    I+ F+ E+   Q V G+LYERE DRLL+GLGPRF+D
Sbjct: 319  EKFNGSTLQSGLYREDREKESMP-INIFMKEDENNQPVIGSLYERETDRLLDGLGPRFID 377

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLPIDADLLPE VPGF  P R  PP+  P LTDDEL  LRK    LP HFALG+N
Sbjct: 378  WWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKN 437

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSLIAKIA+K GI NT++E MA ELK LTGGVL++RNKF +I YR
Sbjct: 438  RNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYR 497

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYI 1819
            GKDFLP GVANLVV+RE  L RCQL EEGAR K  ++    +E +A++S+ GT SEF+ I
Sbjct: 498  GKDFLPQGVANLVVEREMALRRCQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDI 557

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            +T++G     + + ++Q+  +KE L++ELR QE KL IL  KIEKSAKEL KL S+ +PA
Sbjct: 558  QTRFGDLKKESSELELQLEAQKENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPA 617

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEER+CLRKIGLK+N  L+LGRRG+F+GV+  ++ HWKHRE+VKVITMQ+
Sbjct: 618  EQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQR 677

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              ++V  TA+ L  E+GGI+++VE ++ GHA+IIYRGKNY+RPL L   NLL K+ AL +
Sbjct: 678  VFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQ 737

Query: 2360 SLEMQRIGSLKFFAYQRQRRI 2422
            S+E+QRIGSLKFFAYQR++ I
Sbjct: 738  SIELQRIGSLKFFAYQRRQAI 758


>ref|XP_006603054.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Glycine max]
          Length = 750

 Score =  719 bits (1857), Expect = 0.0
 Identities = 393/735 (53%), Positives = 513/735 (69%), Gaps = 5/735 (0%)
 Frame = +2

Query: 236  SYRPLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLP 415
            SY    + SS   + P++ N    Q ++P           +   +K P  PWM+ PLLL 
Sbjct: 14   SYSRFHISSS---LPPNSNNGHNHQHTSP-----------SQVPIKSPTPPWMKVPLLLQ 59

Query: 416  GNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE 595
             +E++DLS  ++KK K   E+ E +D +L  K    RG+RAM++IV+ + KL +++NS E
Sbjct: 60   PHELVDLSNPKSKKFKP--EKHELSDKALMGKEV--RGKRAMKKIVDRVEKLHKTQNSNE 115

Query: 596  TQKELEKFE-LRAPLGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETV 772
            T+ +    E     L ++ E+E+  S+ RMPW   E+  F ++K+EK VTAAEL+L + +
Sbjct: 116  TRVDSLNVENFGGYLEILKENEEVRSKGRMPWEKDEKFGFVKVKREKAVTAAELTLDKAL 175

Query: 773  LKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIE 952
            L+RLRN+A RM  W+KVKKAGVT  +VD IKRTWR NELAM+KF +PLCRNMDRAREI+E
Sbjct: 176  LRRLRNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVE 235

Query: 953  LKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKI---HSERAHVIDTSPVHVNLVKSEDRT 1123
             KTGGLVV SKKD  VVYRGCN++ + K    +   H E   V   +   +  V+S    
Sbjct: 236  TKTGGLVVLSKKDFLVVYRGCNHQLTTKGSPSLRTNHYEMNRVELATKGDIFRVESNH-- 293

Query: 1124 TTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPL 1303
              S  +      D KDSI   I +++  Q V G+LYERE +RLL+GLGPRF+DWW  KPL
Sbjct: 294  --SSSEMLNWNADHKDSISTGI-QDVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPL 350

Query: 1304 PIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLA 1483
            P+DADLLPE VPGF  PFR CPPH   KLTD ELT  RK A+ LPTHF LGRN  L+GLA
Sbjct: 351  PVDADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLA 410

Query: 1484 NAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPS 1663
            +A++KLWEKSLIAKIA+K GIPNT++E+MA ELK LTGGVL+LRNKF+I+ YRG DFLP 
Sbjct: 411  SAILKLWEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPR 470

Query: 1664 GVANLVVDREKELERCQLREEGARWKPIKSFHAINET-VARSSSGTFSEFQYIKTKYGIF 1840
             VA+LV  RE EL+  QL EE AR K I++F  I+E  +  S+SGT +EF+ I+TK    
Sbjct: 471  SVASLVEKRELELKSRQLHEEVARMKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDT 530

Query: 1841 CNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADRE 2020
             +   DS+IQ+  E  RL+KEL+ ++ + FIL +KI++S +EL KLN+AW P+EQ  D E
Sbjct: 531  KSVNVDSNIQLEAEICRLEKELKEEQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLE 590

Query: 2021 VITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVND 2200
            ++T+EER+C RKIGLKM   L+LGRRGIFDGV+  +H HWKHRE+VKVITMQK  SQV +
Sbjct: 591  IMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVIN 650

Query: 2201 TARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRI 2380
            TA+ LE ESGGI+++V+ ++ GHAIIIYRGKNY+RP      NLL K+ AL RSLEMQRI
Sbjct: 651  TAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRI 710

Query: 2381 GSLKFFAYQRQRRIS 2425
            GS+KFFA+QR++ IS
Sbjct: 711  GSMKFFAHQREQAIS 725


>ref|XP_006357840.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum tuberosum]
          Length = 802

 Score =  718 bits (1854), Expect = 0.0
 Identities = 397/733 (54%), Positives = 501/733 (68%), Gaps = 41/733 (5%)
 Frame = +2

Query: 353  STNDAVKVPNAPWMQGPLLLPGNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGR 532
            S++  +K P APWM+GPLLL  N+ LDLS++R KK  +  +     DA L+ KVSGGRG+
Sbjct: 69   SSSSGIKGPTAPWMRGPLLLEPNQFLDLSKSRKKKDANFAKTQNPNDA-LSGKVSGGRGK 127

Query: 533  RAMRRIVESITKLQESRNSEETQKELE-KFELRAPLGLICE--------------DEKSN 667
            +AM+ I + I KLQE++  E TQ E + K E + P G + E               E+ N
Sbjct: 128  KAMKMIYQGIDKLQETQIGEGTQVETDAKVEFQFPPGSLSEWGDVSYEIEEKNPYGEEDN 187

Query: 668  SEP-----------------------RMPWMSQERIVFRRIKKEKVVTAAELSLSETVLK 778
             E                        +MPW S+ RIV+RR+KKEKVV  AE +L   +L+
Sbjct: 188  VESLEGVEFGVLSREGEGRGSRKIGVKMPWESEVRIVYRRMKKEKVVMTAESNLDAMLLE 247

Query: 779  RLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIELK 958
            RLR +A R+ KWVKVKKAGVT  +VD I   W+ NELAM+KF LPLCRNMDRAREI+E+K
Sbjct: 248  RLRGEAARIQKWVKVKKAGVTRTVVDQIHFIWKNNELAMLKFDLPLCRNMDRAREIVEMK 307

Query: 959  TGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSEDRTTTSCK 1138
            TGG VVW K++  VVYRGC+Y    K  Q          D    H N   +E+   TS  
Sbjct: 308  TGGFVVWMKQNALVVYRGCSYTLQQKELQH---------DFLCSHQNSSFTENIKQTSIF 358

Query: 1139 QQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPLPIDAD 1318
                 +   +D +        +  ++  +LY REA+RLL+ LGPR+VDWWWPKPLP++AD
Sbjct: 359  SPLNSSGSSEDEMISVGNSEEDSLAMNESLYVREANRLLDDLGPRYVDWWWPKPLPVNAD 418

Query: 1319 LLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLANAMIK 1498
            LLPE VPGF  PFR CPP    KLTDDELT LRK AR LPTHF LGRN KLQGLA A++K
Sbjct: 419  LLPEVVPGFKPPFRLCPPRSRSKLTDDELTQLRKLARSLPTHFVLGRNRKLQGLAAAVVK 478

Query: 1499 LWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPSGVANL 1678
            LWEK  IAKIA+K GIPNT++ELMA ELK LTGGVL+LRNKFFII YRGKDFLPS VANL
Sbjct: 479  LWEKCHIAKIALKWGIPNTSNELMANELKYLTGGVLLLRNKFFIILYRGKDFLPSQVANL 538

Query: 1679 VVDREKELERCQLREEGARWKPIKSFHAINE-TVARSSSGTFSEFQYIKTKYGIFCNGTE 1855
            V +RE EL RCQL EE AR+K I++     E +++ SS GT SEFQ I         G E
Sbjct: 539  VAEREVELTRCQLEEEVARFKAIETLPITMEVSMSSSSVGTLSEFQTIAEP------GKE 592

Query: 1856 DS--DIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADREVIT 2029
             S  ++Q+ +EKERL+KELR Q++ L ILK+KIEKS+  L KLN+AW+PA++  D+E++T
Sbjct: 593  KSEVEVQLMSEKERLEKELRNQQNNLHILKKKIEKSSIALGKLNAAWRPAKEDDDKEILT 652

Query: 2030 EEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVNDTAR 2209
            +EER+ LR+IGLKM++ L+LGRRG+FDGV+  +H HWKHRE++KVITMQK  SQV  TA+
Sbjct: 653  QEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQHWKHREVIKVITMQKIFSQVIHTAK 712

Query: 2210 QLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRIGSL 2389
             LE ESGGI+I+V+ ++ GHAIIIYRGKNY+RP  L P NLL K+ ALCRSLEMQR+GSL
Sbjct: 713  LLETESGGILISVDKIKEGHAIIIYRGKNYRRP-ELVPQNLLNKRQALCRSLEMQRLGSL 771

Query: 2390 KFFAYQRQRRISN 2428
            KF+A Q ++ IS+
Sbjct: 772  KFYANQTEQAISD 784


>gb|EXC20503.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 828

 Score =  709 bits (1829), Expect = 0.0
 Identities = 384/708 (54%), Positives = 486/708 (68%), Gaps = 19/708 (2%)
 Frame = +2

Query: 362  DAVKVPNAPWMQGPLLLPGNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAM 541
            + +K+P  PWM+GPL+L  +EV DLS+  N   K    ++E++   LT+K+ G RG+  +
Sbjct: 60   EPIKMPTPPWMKGPLVLQPHEVTDLSKPENDN-KFSNRKAEKSVNGLTDKLVGRRGKNVI 118

Query: 542  RRIVESITKL--QESRNSEETQKELEKFELRAPLGLICED--EKSNSEPRMPWMSQERIV 709
            ++I   I +L  +   +SEETQK+   F  +  +G   E   E  +   RMPW   E  V
Sbjct: 119  KKIARRIEELGRKSKVDSEETQKD---FVGKNGIGDCLEGLGESRSGGERMPWEKDEGFV 175

Query: 710  FRRIKKEKVVTAAELSLSETVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENEL 889
            FRR+KKEK+V++AEL L   +L+RLR++A +M KWVKVKKAGVT  +V+ +K  W+ NEL
Sbjct: 176  FRRMKKEKIVSSAELRLERELLERLRSEARKMRKWVKVKKAGVTKEVVEDVKFVWKSNEL 235

Query: 890  AMVKFYLPLCRNMDRAREIIELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAH 1069
            AMVKF +PLCRNMDRA+EI+E+KTGGLVVW +KD  V+YRGCNY+ + K   + ++  + 
Sbjct: 236  AMVKFDVPLCRNMDRAQEILEMKTGGLVVWRRKDAQVIYRGCNYQPTSKTFPRTYAGFSG 295

Query: 1070 VIDTSPVHVNLVKSEDRTTTSCKQ--QGEVTQDGKDSIHEFIGENLELQSVC-------- 1219
              +T     NLV+ + R   S  +    E T + K S     GE +    +         
Sbjct: 296  HQETP--FSNLVQLDSRKGNSVSEVKSYENTIERKISKKNTEGETIPTAIILKNDANFQP 353

Query: 1220 -GTLYEREADRLLNGLGPRFVDWWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTD 1396
              +LY READRLL+GLGPRF+DWW  KPLP+DADLLPE VPGF  PFRRCPPH   KLTD
Sbjct: 354  SSSLYVREADRLLDGLGPRFIDWWMNKPLPVDADLLPEVVPGFRPPFRRCPPHTRSKLTD 413

Query: 1397 DELTNLRKFARYLPTHFALGRNTKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQ 1576
            +ELT LRK A  LPTHF LGRN KLQGLA A++KLWEK  IAKIAVKLG+PNTN+E MA 
Sbjct: 414  EELTYLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKLGVPNTNNEQMAY 473

Query: 1577 ELKR---LTGGVLILRNKFFIIFYRGKDFLPSGVANLVVDREKELERCQLREEGARWKPI 1747
            ELK    LTGG L+LRNKF II YRGKDFLP  +A L+  RE ELE CQL EE AR    
Sbjct: 474  ELKARICLTGGDLLLRNKFIIILYRGKDFLPDQIAELITKRETELEYCQLYEEHARLVVA 533

Query: 1748 KSFHAINETVARSS-SGTFSEFQYIKTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHK 1924
            +     +E + ++S +GT SEF  I+ +YG    G  +  +    EKERL+ ELR QE K
Sbjct: 534  EKVFVADEPLKKTSPAGTLSEFHDIQIEYGDSNKGNIEVKLPFEAEKERLESELRKQERK 593

Query: 1925 LFILKRKIEKSAKELLKLNSAWKPAEQSADREVITEEERQCLRKIGLKMNKILMLGRRGI 2104
            L IL  KI+KS KELLKLN+AWKP+E+  D+E++TEEER+C RKIGLKM  +L+LGRRGI
Sbjct: 594  LLILNSKIKKSTKELLKLNTAWKPSERDGDQEMLTEEERECFRKIGLKMRSVLVLGRRGI 653

Query: 2105 FDGVVGSMHLHWKHREIVKVITMQKSLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIY 2284
            FDGV+  +  HWKHRE+ KVITMQ+   QV  TA  LE ESGG++++VE ++ GHAIIIY
Sbjct: 654  FDGVIEGLRQHWKHREVAKVITMQRYFWQVMYTATSLEAESGGLLVSVEKLKEGHAIIIY 713

Query: 2285 RGKNYQRPLNLWPGNLLKKKAALCRSLEMQRIGSLKFFAYQRQRRISN 2428
            RGKNY+RPL L   NLL K+ AL RSLEMQRIGSLKFFAYQR R IS+
Sbjct: 714  RGKNYRRPLKLISVNLLTKRKALSRSLEMQRIGSLKFFAYQRHRAISD 761


>ref|XP_007033221.1| maize chloroplast splicing factor CRS1, putative isoform 5 [Theobroma
            cacao] gi|508712250|gb|EOY04147.1| maize chloroplast
            splicing factor CRS1, putative isoform 5 [Theobroma
            cacao]
          Length = 788

 Score =  703 bits (1814), Expect = 0.0
 Identities = 381/733 (51%), Positives = 509/733 (69%), Gaps = 15/733 (2%)
 Frame = +2

Query: 245  PLKVQSSQTEITPSTKNSERSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNE 424
            P     + ++    T    RS  +N KFS   D     N  +K+P APWM+GPLLL  +E
Sbjct: 50   PFSSSLNSSQNPSKTHKENRSLNNNSKFSVSKDP---NNGPIKMPTAPWMKGPLLLQPHE 106

Query: 425  VLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQK 604
            VL+ S++ +KK  S   +++  D +L  K SG RG++ M++I+ ++  LQ +   E+TQ 
Sbjct: 107  VLNPSKSTSKK--SSNSKAKAPDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQI 164

Query: 605  EL-EKFELRAPLGLICED-EKSNSEPRMPWM-SQERIVFRRIKKEKVVTAAELSLSETVL 775
             + E+FE+   L     D E    + +MPW+  +E++VFRR+KKEK++T AE+SL + +L
Sbjct: 165  GIREEFEVGNWLEEFGSDGEVKRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLL 224

Query: 776  KRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIEL 955
            +RLR  A+RM KW+KV K GVT A+VD IK  WR+NEL MVKF +PLCRNMDRAREIIE+
Sbjct: 225  ERLRRKAMRMRKWIKVMKLGVTKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEM 284

Query: 956  KTGGLVVWSKKDIHVVYRGCNYESSLKVC----------QKIHSER-AHVIDTSPVHVNL 1102
            KT GLVVW KKD  VVYRGC++  + K+           Q+I S   +H+  ++ ++++L
Sbjct: 285  KTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSL 344

Query: 1103 VKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVD 1282
             K    T  S   + +  ++    I+ F+ E+   Q V G+LYERE DRLL+GLGPRF+D
Sbjct: 345  EKFNGSTLQSGLYREDREKESMP-INIFMKEDENNQPVIGSLYERETDRLLDGLGPRFID 403

Query: 1283 WWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRN 1462
            WW  KPLPIDADLLPE VPGF  P R  PP+  P LTDDEL  LRK    LP HFALG+N
Sbjct: 404  WWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKN 463

Query: 1463 TKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYR 1642
              LQGLA A++KLWEKSLIAKIA+K GI NT++E MA ELK LTGGVL++RNKF +I YR
Sbjct: 464  RNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYR 523

Query: 1643 GKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSSS-GTFSEFQYI 1819
            GKDFLP GVANLVV+RE  L RCQL EEGAR K  ++    +E +A++S+ GT SEF+ I
Sbjct: 524  GKDFLPQGVANLVVEREMALRRCQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDI 583

Query: 1820 KTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPA 1999
            +T++G     + + ++Q+  +KE L++ELR QE KL IL  KIEKSAKEL KL S+ +PA
Sbjct: 584  QTRFGDLKKESSELELQLEAQKENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPA 643

Query: 2000 EQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQK 2179
            EQ  D E+ITEEER+CLRKIGLK+N  L+LGRRG+F+GV+  ++ HWKHRE+VKVITMQ+
Sbjct: 644  EQDVDLEIITEEERECLRKIGLKLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQR 703

Query: 2180 SLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCR 2359
              ++V  TA+ L  E+GGI+++VE ++ GHA+IIYRGKNY+RPL L   NLL K+ AL +
Sbjct: 704  VFARVIYTAKFLVAETGGILVSVEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQ 763

Query: 2360 SLEMQRIGSLKFF 2398
            S+E+QRIG   FF
Sbjct: 764  SIELQRIGVSPFF 776


>ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [Amborella trichopoda]
            gi|548844430|gb|ERN04039.1| hypothetical protein
            AMTR_s00079p00185530 [Amborella trichopoda]
          Length = 886

 Score =  697 bits (1798), Expect = 0.0
 Identities = 382/755 (50%), Positives = 492/755 (65%), Gaps = 30/755 (3%)
 Frame = +2

Query: 302  RSQPSNPKFSFLADTLLSTNDAVKVPNAPWMQGPLLLPGNEVLDLSRARNKKGKSRGEES 481
            + Q   P  SFL    +  ++ VK+P APWM+GPLLLP ++VLDLS++R K       E 
Sbjct: 161  KGQQGLPTLSFLRK--IGHHNEVKMPTAPWMRGPLLLPADDVLDLSKSRKKSSN----EM 214

Query: 482  ERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQKEL-----EKFELRA----- 631
               D +LT  V GGR + AMR I+E+ITKL+E     E +KE      ++ ++R+     
Sbjct: 215  NSDDKALTGGVRGGRSKHAMRLIMENITKLKEIHEENEQKKETHIVLSDEVDIRSKINSS 274

Query: 632  ---------------PLGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSE 766
                           PL  +   E    E ++PW   E+ VFRR+KKEK  T AELSL +
Sbjct: 275  FSEGATKSIEAGFNLPLKEVSVSEDQAMETKLPWTMAEKNVFRRVKKEKTPTKAELSLPK 334

Query: 767  TVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREI 946
             +L RLR+    +TKWVKVKKAGVT  +++ I   W++ ELAM+KF +PLCRNMDRA EI
Sbjct: 335  PLLTRLRDRGRTLTKWVKVKKAGVTQEVMNEIYAVWKKRELAMLKFDVPLCRNMDRATEI 394

Query: 947  IELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVK----SE 1114
            +E KTGGLVVW KK   VVYRG NY S  K  +           T+P  + L      S 
Sbjct: 395  VETKTGGLVVWRKKGTLVVYRGTNYHSLSKTSE-----------TNPWSLELFDDNKISA 443

Query: 1115 DRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWP 1294
                 + K    + Q G D + +             TL+EREA+RLL+ LGPRF+DWWW 
Sbjct: 444  PNGFLNFKDDTMIYQAGSDGLMK------------ETLFEREANRLLDELGPRFIDWWWS 491

Query: 1295 KPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQ 1474
             PLP+DADLLPE +P F  P R CPPH   KLTD+ELT LRKFA++LPTHFALG+NTKLQ
Sbjct: 492  TPLPVDADLLPEVIPNFRPPLRLCPPHMQSKLTDEELTYLRKFAKHLPTHFALGKNTKLQ 551

Query: 1475 GLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDF 1654
            GLA A++KLWEKSLIAKIA+K GIPN N + MA ELK LTGGVL+L+NKFFI+ YRGKDF
Sbjct: 552  GLAAAILKLWEKSLIAKIAIKWGIPNVNHQQMAYELKHLTGGVLLLQNKFFILLYRGKDF 611

Query: 1655 LPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINETVARSS-SGTFSEFQYIKTKY 1831
            LP GVAN + +RE  L+  Q+ EE AR      F + +ET   +S +GT S+FQ I+   
Sbjct: 612  LPPGVANSIAERETTLKTLQIHEENARSIAATGFLSPDETQPTTSRTGTLSDFQEIQEHS 671

Query: 1832 GIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSA 2011
              F     +S+I++   KE+L+ ELR QEH L ILK K+E+S KE+ KLNSAW+PA+  A
Sbjct: 672  HPFNESQTESNIKLEAAKEKLEIELRKQEHMLSILKLKVERSEKEMAKLNSAWQPAKGEA 731

Query: 2012 DREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQ 2191
            D+E IT+EE Q  RK+GLKM+++L+LGRRG+FDGV+GS+H HWKHRE+VK+++MQK+L +
Sbjct: 732  DQETITKEEFQNFRKVGLKMDEVLLLGRRGVFDGVIGSIHQHWKHREVVKLVSMQKTLEE 791

Query: 2192 VNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEM 2371
            V  TAR LE ESGGI+IAV  +R GHAII+YRGKNY+RP  L P NLL KK A  RS+E+
Sbjct: 792  VTRTARMLETESGGILIAVVKLRKGHAIILYRGKNYRRPPKLLPDNLLSKKEAFDRSIEI 851

Query: 2372 QRIGSLKFFAYQRQRRISNXXXXXXDLQDRDEEAV 2476
            QR GSLK+F  Q+++ I         LQ + E AV
Sbjct: 852  QRRGSLKYFICQQEQSIWKLQQQLKKLQKQAEVAV 886


>ref|XP_004507538.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cicer arietinum]
          Length = 764

 Score =  695 bits (1793), Expect = 0.0
 Identities = 390/765 (50%), Positives = 502/765 (65%), Gaps = 19/765 (2%)
 Frame = +2

Query: 260  SSQTEITPSTKNSERSQPSNPKFSFLADTLLSTND---AVKVPNAPWMQGPL-LLPGNEV 427
            SS +  +P+ KN+       P  S   +    ++D    +K P  PW++ PL L P   +
Sbjct: 16   SSSSSFSPNPKNNNNLNHHKP-LSIPNNNNSHSHDHISIIKSPTPPWIKSPLHLQPQQHL 74

Query: 428  LDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEE---- 595
            L+          S  E+S+ +D +L  K   G+  + +R+I   + KL ++ +SE+    
Sbjct: 75   LN----------SNVEKSDLSDKALNSKEISGK--KVLRKIAHKVEKLHKALDSEKNETL 122

Query: 596  TQKELEKFELRAP-LGLICEDEKSNSEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETV 772
            TQ   EK E     L ++ E+E+  ++ RMPW   E+I F ++K+EK  +AA+L++ + V
Sbjct: 123  TQMGSEKVENFGDCLDILMENEEVVNKGRMPWEKDEKIGFFKVKREKTFSAADLNVDKVV 182

Query: 773  LKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIE 952
            L RLR +A RM KWVKVKK GVT  +VD IKR+WR NELAMVKF +PLC+NM RAREI+E
Sbjct: 183  LHRLRGEAARMRKWVKVKKIGVTQDVVDEIKRSWRMNELAMVKFDIPLCQNMGRAREIVE 242

Query: 953  LKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSEDR---- 1120
             KTGGLV+W KKD  VVYRGCNY+ + K   KIH+       T+    N VKS  +    
Sbjct: 243  TKTGGLVIWCKKDTLVVYRGCNYQLTSKSSPKIHTGYIRSQKTNSYETNEVKSATKGDLS 302

Query: 1121 ---TTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWW 1291
               +T S  +      + KDS+      N+  Q   G+LYE+E DRLL+GLGPRFVDWW 
Sbjct: 303  RVESTQSSSEILSSNAEHKDSLSTD-NYNMNYQPRSGSLYEKECDRLLDGLGPRFVDWWM 361

Query: 1292 PKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKL 1471
             KPLP+DADLLPE VPGF  PFR CPPH   KLTDDELT  RK +  LPTHF LGRN  L
Sbjct: 362  DKPLPVDADLLPEVVPGFEPPFRLCPPHARSKLTDDELTYFRKISHPLPTHFVLGRNRGL 421

Query: 1472 QGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKD 1651
            QGLA A++KLW+KS  AKIA+K G+PNT++E+MA ELKRLTGGVL+LRNKF+I+ YRGKD
Sbjct: 422  QGLAAAILKLWQKSHTAKIAIKYGVPNTDNEVMANELKRLTGGVLLLRNKFYILLYRGKD 481

Query: 1652 FLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINE---TVARSSSGTFSEFQYIK 1822
            FLP  VA LV  RE EL+ CQL EE AR K I++F + +E       S+SGT +EF  I+
Sbjct: 482  FLPRRVAALVERRELELKSCQLHEEVARAKAIQAFSSFDELQLPQEASTSGTLTEFMKIQ 541

Query: 1823 TKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAE 2002
             K+        DS+I +  E  RL+KEL+ Q+HK FIL +KIE+SA EL KLN+ W PA 
Sbjct: 542  MKFEDIKEVNVDSNIALEAEIYRLEKELKEQQHKAFILNKKIERSAMELSKLNAVWTPAG 601

Query: 2003 QSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKS 2182
            +  D E++T+EER+C RK+GLKM   L+LGRRGIFDGV+  +H +WKHREI KVITMQ+ 
Sbjct: 602  EDIDLEIMTDEERECFRKMGLKMRSCLVLGRRGIFDGVLEGLHQYWKHREIAKVITMQRL 661

Query: 2183 LSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRS 2362
            LSQV  T++ LE ESGGI+++V+ ++ GHAIIIYRGKNY RP      NLL K+ AL RS
Sbjct: 662  LSQVIYTSQFLERESGGILVSVDKLKEGHAIIIYRGKNYSRPSQKIAKNLLTKRKALRRS 721

Query: 2363 LEMQRIGSLKFFAYQRQRRISNXXXXXXDLQDRDEEAVLKECRKF 2497
            LEMQRIGSLKFFAYQR++ ISN       LQ R E     E RKF
Sbjct: 722  LEMQRIGSLKFFAYQREKTISNLKLKLETLQHRKE----IEARKF 762


>ref|XP_002306656.2| hypothetical protein POPTR_0005s15420g [Populus trichocarpa]
            gi|550339039|gb|EEE93652.2| hypothetical protein
            POPTR_0005s15420g [Populus trichocarpa]
          Length = 729

 Score =  692 bits (1785), Expect = 0.0
 Identities = 388/759 (51%), Positives = 503/759 (66%), Gaps = 32/759 (4%)
 Frame = +2

Query: 248  LKVQSSQTEIT----PSTK--------NSERSQPS------NPKFSFLADTLLSTNDA-- 367
            LK  SS T IT    P+TK        N++ + PS      N + + L + +  +N    
Sbjct: 8    LKFFSSYTPITSSLNPTTKKHCNTTLNNAQITTPSMFANNNNKELAVLTNPISQSNATTN 67

Query: 368  VKVPNAPWMQGPLLLPGNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGRRAMRR 547
            VKVP  PW++GPL+L  +E+L+L+  +NKK   + ++ E+ D +LT K SG RG +AM +
Sbjct: 68   VKVPTPPWIKGPLILQPHELLNLTNPKNKK-PIKNDKIEKDDKALTAKESGVRGNKAMIQ 126

Query: 548  IVESITKLQESRNSEETQKELEKFELRAPLGLICEDEKSNSEPRMPWMSQERIVFRRIKK 727
            IV+S+ +LQ   N ++TQ+  E        G++   EK     ++PW+ +ER+   R+KK
Sbjct: 127  IVKSVERLQRDENLKDTQEISEN-------GVLGFREK-----KLPWVREERVGNWRMKK 174

Query: 728  EKVVTAAELSLSETVLKRLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFY 907
            EKVV+ AELSL + +L+RLR +A +M  WVKVKKAGVT ++VD I+ TWR +ELAM+KFY
Sbjct: 175  EKVVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIKFY 234

Query: 908  LPLCRNMDRAREIIELKTGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSP 1087
            +PLCRNM+RAR+I+E  TGGLVVW++KDIHVVYRGCNY+                     
Sbjct: 235  MPLCRNMNRARDIVE--TGGLVVWTRKDIHVVYRGCNYQW-------------------- 272

Query: 1088 VHVNLVKSEDRTTTSCKQQGEVTQDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLG 1267
                  K    T T                   I ENL  Q + G+L+ERE DRLL+GLG
Sbjct: 273  ------KKNFNTAT-------------------IEENLNTQPINGSLFERETDRLLDGLG 307

Query: 1268 PRFVDWWWPKPLPIDADLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHF 1447
            PRFVDWW  KPLP+DADLLPE V GF +P R CPP    KL DDELT LRK A+ LPTHF
Sbjct: 308  PRFVDWWMRKPLPVDADLLPEVVKGFRSPSRLCPPRMRSKLKDDELTYLRKLAQSLPTHF 367

Query: 1448 ALGRNTKLQGLANAMIKLWEKSLIAKIAVKLGIPNTNDELMAQELKR------------L 1591
             LGRN +LQGLA A++KLWEK++IAKIAVK G+PNTN+E MA ELK             L
Sbjct: 368  VLGRNRRLQGLAAAILKLWEKTIIAKIAVKWGVPNTNNEQMADELKAKIFLMLMLYTQSL 427

Query: 1592 TGGVLILRNKFFIIFYRGKDFLPSGVANLVVDREKELERCQLREEGARWKPIKSFHAINE 1771
            TGGVL+LRNKFFII YRGKDFLP  VAN++VDRE  L +CQ  EEGAR K I++ +    
Sbjct: 428  TGGVLLLRNKFFIILYRGKDFLPGQVANVIVDREIALRKCQTNEEGARMKAIETSYMPGG 487

Query: 1772 TVARSSSGTFSEFQYIKTKYGIFCNGTEDSDIQVATEKERLKKELRIQEHKLFILKRKIE 1951
                S  GT  EFQ  + K+     G  DS+IQ+   KE+L++ELR QE++L ILK KIE
Sbjct: 488  PTNTSRCGTLYEFQEFQIKFQKTAKG--DSEIQLEAYKEKLERELRNQEYRLRILKSKIE 545

Query: 1952 KSAKELLKLNSAWKPAEQSADREVITEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMH 2131
            K A++L KLNSAW P+ + AD+ ++TEEER+C RKIGLK+   L+LGRRG+F+GV+  +H
Sbjct: 546  KPARDLSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRGSLVLGRRGVFEGVMEGLH 605

Query: 2132 LHWKHREIVKVITMQKSLSQVNDTARQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPL 2311
             HWKHRE+VKVITMQ+  SQV  TA  LE ES GI+++V+ ++ GHAIIIYRGKNY+RPL
Sbjct: 606  QHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKLKEGHAIIIYRGKNYKRPL 665

Query: 2312 NLWPGNLLKKKAALCRSLEMQRIGSLKFFAYQRQRRISN 2428
             L   NLL K+ AL RSL +QR+GSLK+FA QR+R IS+
Sbjct: 666  RLLKKNLLTKREALKRSLLIQRVGSLKYFANQRERVISD 704


>ref|XP_004233710.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 766

 Score =  688 bits (1776), Expect = 0.0
 Identities = 388/734 (52%), Positives = 485/734 (66%), Gaps = 42/734 (5%)
 Frame = +2

Query: 353  STNDAVKVPNAPWMQGPLLLPGNEVLDLSRARNKKGKSRGEESERTDASLTEKVSGGRGR 532
            S++  +K P APWM+GPLLL  N+VLDLS++R KK  +  +     DA L+ KVSGGRG+
Sbjct: 69   SSSSGIKGPTAPWMRGPLLLEPNQVLDLSKSRKKKDTNFAKTQNPNDA-LSGKVSGGRGK 127

Query: 533  RAMRRIVESITKLQESRNSEETQKELE-KFELRAPLGLIC-------EDEKSN------- 667
            +AM+ I + I KLQE++  E TQ E + K E + P G +        E E+ N       
Sbjct: 128  KAMKMIYQGIDKLQETQIGECTQVETDVKVEFQFPPGSLSGWGDVSYEIEEKNPYGEEDN 187

Query: 668  -----------------------SEPRMPWMSQERIVFRRIKKEKVVTAAELSLSETVLK 778
                                   S  RMPW S+ERIV+RR+KKEKVV  AE +L   +L+
Sbjct: 188  VESLEGVEFGVLSREGEGRGSRKSGARMPWESEERIVYRRMKKEKVVRTAESNLDAMLLE 247

Query: 779  RLRNDAVRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIELK 958
            RLR +A R+ KWVKVKKAGVT  +VD I+  W+ NELAM+KF LPLCRNMDRAR+I+E+K
Sbjct: 248  RLRGEAARIQKWVKVKKAGVTRTVVDQIQFIWKNNELAMLKFDLPLCRNMDRARDIVEMK 307

Query: 959  TGGLVVWSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSEDRTTTSCK 1138
            TGG VVW                                                    K
Sbjct: 308  TGGFVVWM---------------------------------------------------K 316

Query: 1139 QQGEVTQDGKDSIHEFIGENLELQSVCG-TLYEREADRLLNGLGPRFVDWWWPKPLPIDA 1315
            Q   V   G + I   +G + E   V   +LYEREA+RLL+ LGPR+VDWWWPKPLP+DA
Sbjct: 317  QNALVVYRGYEMIS--VGNSEEDSLVMNESLYEREANRLLDDLGPRYVDWWWPKPLPVDA 374

Query: 1316 DLLPEFVPGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLANAMI 1495
            DLLPE VPGF  PFR CPP    KLTDDELT LRK AR LPTHF LGRN KLQGLA A++
Sbjct: 375  DLLPEVVPGFKPPFRLCPPRSRSKLTDDELTQLRKLARSLPTHFVLGRNRKLQGLAAALV 434

Query: 1496 KLWEKSLIAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPSGVAN 1675
            KLWEK  IAKIA+K GIPN ++ELMA ELK LTGGVL+LRNKFFII YRGKDFLPS VA 
Sbjct: 435  KLWEKCHIAKIALKWGIPNASNELMANELKYLTGGVLLLRNKFFIILYRGKDFLPSQVAK 494

Query: 1676 LVVDREKELERCQLREEGARWKPIKSFHAINE-TVARSSSGTFSEFQYIKTKYGIFCNGT 1852
            LV +RE EL RCQL EE AR+K I++     E +++ S  GT SEFQ I         G 
Sbjct: 495  LVAEREVELTRCQLEEEVARFKAIETLPITMEASMSSSIVGTLSEFQTIAEP------GK 548

Query: 1853 EDS--DIQVATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADREVI 2026
            E S  ++Q+ +EKERL+KE+R Q+  L+ILK+KIEKS+  L KLN+AW+PA++  D+E++
Sbjct: 549  EKSEVEVQLMSEKERLEKEVRNQQDSLYILKKKIEKSSIALGKLNAAWRPAKEDDDKEIL 608

Query: 2027 TEEERQCLRKIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVNDTA 2206
            T+EER+ LR+IGLKM++ L+LGRRG+FDGV+  +H HWKHRE++KVITMQK  SQV  TA
Sbjct: 609  TQEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQHWKHREVIKVITMQKIFSQVIHTA 668

Query: 2207 RQLEIESGGIMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRIGS 2386
            + LE ESGGI+I+V+ ++ GHAIIIYRGKNY+RP  L P NLL K+ ALCRSLEMQR+GS
Sbjct: 669  KLLETESGGILISVDKIKEGHAIIIYRGKNYRRP-ELVPQNLLNKRQALCRSLEMQRLGS 727

Query: 2387 LKFFAYQRQRRISN 2428
            LKF+A Q ++ IS+
Sbjct: 728  LKFYANQTEQAISD 741


>ref|XP_007139175.1| hypothetical protein PHAVU_008G007700g [Phaseolus vulgaris]
            gi|561012308|gb|ESW11169.1| hypothetical protein
            PHAVU_008G007700g [Phaseolus vulgaris]
          Length = 744

 Score =  687 bits (1772), Expect = 0.0
 Identities = 375/738 (50%), Positives = 494/738 (66%), Gaps = 14/738 (1%)
 Frame = +2

Query: 296  SERSQPSNPKFSFL---ADTLLSTNDA-----VKVPNAPWMQGPLLLPGNEVLDLSRARN 451
            S R  P+   +S++   +  L ++N+      +K P  PWM+GPLLL  NE+LDLS  ++
Sbjct: 8    SPRFSPNAYSYSYIHISSSMLPNSNNTPSQLPIKGPTPPWMKGPLLLQPNELLDLSNPKS 67

Query: 452  KKGKSRGEESERTDASLTEKVSGGRGRRAMRRIVESITKLQESRNSEETQKELEKFELRA 631
            KK K   E  E +D  L  K +  RG++ M++IVE + KL  + NS          E   
Sbjct: 68   KKFKL--ERQELSDKDLMGKEA--RGKKTMKKIVEKVEKLHGTHNSAGALIGSPNVE--- 120

Query: 632  PLGLICEDEKSNSEPR-----MPWMSQERIVFRRIKKEKVVTAAELSLSETVLKRLRNDA 796
             +G + +  K N E R     MPW +  + V+ +IK+++ VTAAEL+L + + +RLRN+A
Sbjct: 121  NIGGVLDSLKENEEVRRTKGRMPWENDWKFVYEKIKRKRTVTAAELTLDKVLFRRLRNEA 180

Query: 797  VRMTKWVKVKKAGVTAAIVDGIKRTWRENELAMVKFYLPLCRNMDRAREIIELKTGGLVV 976
              M  W+KVKKAGVT  +VD IK TWR NELAMVKF +PLCRNM RAREI+E KTGGLVV
Sbjct: 181  ATMRTWIKVKKAGVTQDVVDQIKWTWRRNELAMVKFDIPLCRNMSRAREIVETKTGGLVV 240

Query: 977  WSKKDIHVVYRGCNYESSLKVCQKIHSERAHVIDTSPVHVNLVKSEDRTTTSCKQQGEVT 1156
             SKKD  VVY G N++ +      + +  + +          + S D   +  +    + 
Sbjct: 241  LSKKDFLVVYHGGNHQLTTTGYPSLRTNHSEMSGAELATTGDICSVDSNHSLSEMLNFIA 300

Query: 1157 QDGKDSIHEFIGENLELQSVCGTLYEREADRLLNGLGPRFVDWWWPKPLPIDADLLPEFV 1336
            +D KDSI     +N+  Q+  G+LYERE DRLL+ LGPRF+DWW  KPLP+DADLLPE V
Sbjct: 301  ED-KDSIATS-EQNMNFQTANGSLYERETDRLLDDLGPRFIDWWMAKPLPVDADLLPEDV 358

Query: 1337 PGFMTPFRRCPPHCGPKLTDDELTNLRKFARYLPTHFALGRNTKLQGLANAMIKLWEKSL 1516
            PGF  P R CPPH   KL+D ELT  RK A+ LPTHF LGRN +L+GLA A++KLWEKSL
Sbjct: 359  PGFQPPLRICPPHSCAKLSDYELTYFRKLAQLLPTHFVLGRNKRLKGLAAAILKLWEKSL 418

Query: 1517 IAKIAVKLGIPNTNDELMAQELKRLTGGVLILRNKFFIIFYRGKDFLPSGVANLVVDREK 1696
            IAKI++K GIPNT++E+MA ELK LTGGVL+LRNKF+II YRG DFLP  VA LV +RE 
Sbjct: 419  IAKISIKYGIPNTDNEMMANELKYLTGGVLLLRNKFYIILYRGNDFLPKRVATLVENREL 478

Query: 1697 ELERCQLREEGARWKPIKSFHAINETVA-RSSSGTFSEFQYIKTKYGIFCNGTEDSDIQV 1873
            EL+  +L EE AR K +++   I+E     S+SGT +EF+ I+TK+     G  + ++Q+
Sbjct: 479  ELKSFELHEEVARMKALEALSPIDEVPQDTSTSGTLTEFKEIQTKFEDAKKGDIELNLQL 538

Query: 1874 ATEKERLKKELRIQEHKLFILKRKIEKSAKELLKLNSAWKPAEQSADREVITEEERQCLR 2053
              E  RL+KEL+ ++H+  IL +K+EKS KEL KLN+AW P+EQ  D E++T+EER+C R
Sbjct: 539  EAEICRLEKELKEEQHRALILNKKMEKSGKELSKLNAAWTPSEQDTDLEMMTDEERECFR 598

Query: 2054 KIGLKMNKILMLGRRGIFDGVVGSMHLHWKHREIVKVITMQKSLSQVNDTARQLEIESGG 2233
            KIGLKM   L+LGRRGIFDGV+  +H HWKHRE+VKVITMQK  SQV +TA+ LE ESGG
Sbjct: 599  KIGLKMQSFLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKLLETESGG 658

Query: 2234 IMIAVESMRNGHAIIIYRGKNYQRPLNLWPGNLLKKKAALCRSLEMQRIGSLKFFAYQRQ 2413
            I+++V++++ GHAIIIYRGKNY RP      NLL K+ AL RSLE+QR GSLKFFA QR+
Sbjct: 659  ILVSVDNLKRGHAIIIYRGKNYTRPSVKLAKNLLTKRKALRRSLELQRFGSLKFFARQRE 718

Query: 2414 RRISNXXXXXXDLQDRDE 2467
            + +S       DL  R E
Sbjct: 719  QSVSELEQKLADLHQRKE 736