BLASTX nr result
ID: Cocculus23_contig00007025
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00007025
(310 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006342200.1| PREDICTED: chlorophyll a-b binding protein o... 63 4e-08
ref|XP_004238472.1| PREDICTED: chlorophyll a-b binding protein o... 63 4e-08
ref|XP_006490397.1| PREDICTED: chlorophyll a-b binding protein 1... 62 6e-08
ref|XP_006490396.1| PREDICTED: chlorophyll a-b binding protein 1... 62 6e-08
ref|XP_006490395.1| PREDICTED: chlorophyll a-b binding protein 1... 62 6e-08
ref|XP_007028794.1| Light-harvesting complex II protein Lhcb7 [T... 61 2e-07
ref|XP_007209349.1| hypothetical protein PRUPE_ppa008546mg [Prun... 61 2e-07
ref|XP_002510744.1| chlorophyll A/B binding protein, putative [R... 61 2e-07
gb|AHM26642.1| LHCII a-b binding protein [Pyrus x bretschneideri] 60 4e-07
ref|XP_002887646.1| chlorophyll A-B binding family protein [Arab... 60 4e-07
ref|XP_002307004.1| chlorophyll A-B binding family protein [Popu... 60 4e-07
gb|EXB56249.1| Chlorophyll a-b binding protein of LHCII type III... 59 7e-07
ref|XP_006302513.1| hypothetical protein CARUB_v10020611mg, part... 59 7e-07
ref|NP_177783.1| chlorophyll A-B binding family protein [Arabido... 59 7e-07
ref|XP_006390178.1| hypothetical protein EUTSA_v10018862mg [Eutr... 58 1e-06
ref|XP_006390176.1| hypothetical protein EUTSA_v10018862mg [Eutr... 58 1e-06
ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1... 58 2e-06
ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycin... 57 2e-06
gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial... 57 3e-06
ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [S... 57 3e-06
>ref|XP_006342200.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Solanum tuberosum]
Length = 318
Score = 63.2 bits (152), Expect = 4e-08
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y+QAALTGKGPVQNL+EH+SDP HNNLL+ LKS+
Sbjct: 285 YVQAALTGKGPVQNLLEHISDPFHNNLLSILKSL 318
>ref|XP_004238472.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Solanum lycopersicum]
Length = 318
Score = 63.2 bits (152), Expect = 4e-08
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y+QAALTGKGPVQNL+EH+SDP HNNLL+ LKS+
Sbjct: 285 YVQAALTGKGPVQNLLEHISDPFHNNLLSILKSL 318
>ref|XP_006490397.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
isoform X3 [Citrus sinensis]
Length = 300
Score = 62.4 bits (150), Expect = 6e-08
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y+QAA TGKGPVQNL++H+SDPLHNNLL+ +KSM
Sbjct: 217 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 250
>ref|XP_006490396.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
isoform X2 [Citrus sinensis]
Length = 338
Score = 62.4 bits (150), Expect = 6e-08
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y+QAA TGKGPVQNL++H+SDPLHNNLL+ +KSM
Sbjct: 305 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 338
>ref|XP_006490395.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
isoform X1 [Citrus sinensis]
Length = 388
Score = 62.4 bits (150), Expect = 6e-08
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y+QAA TGKGPVQNL++H+SDPLHNNLL+ +KSM
Sbjct: 305 YIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 338
>ref|XP_007028794.1| Light-harvesting complex II protein Lhcb7 [Theobroma cacao]
gi|508717399|gb|EOY09296.1| Light-harvesting complex II
protein Lhcb7 [Theobroma cacao]
Length = 362
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y QAALTGKGPVQNL+EH+SDP HNNL + LKSM
Sbjct: 329 YSQAALTGKGPVQNLLEHLSDPFHNNLFSILKSM 362
>ref|XP_007209349.1| hypothetical protein PRUPE_ppa008546mg [Prunus persica]
gi|462405084|gb|EMJ10548.1| hypothetical protein
PRUPE_ppa008546mg [Prunus persica]
Length = 327
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y QAALTGKGPVQNL+EH+SDPLHNN+L+ LK M
Sbjct: 294 YSQAALTGKGPVQNLLEHISDPLHNNVLSVLKFM 327
>ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 329
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y QAALTGKGPVQNL+EH+SDP HNNLL LK M
Sbjct: 296 YAQAALTGKGPVQNLVEHISDPFHNNLLCVLKFM 329
>gb|AHM26642.1| LHCII a-b binding protein [Pyrus x bretschneideri]
Length = 347
Score = 59.7 bits (143), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKSM 209
Y QAALTGKGPV NL+EH+SDPLHNN+ LKSM
Sbjct: 314 YSQAALTGKGPVHNLLEHISDPLHNNVFTLLKSM 347
>ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata] gi|297333487|gb|EFH63905.1| chlorophyll A-B
binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 59.7 bits (143), Expect = 4e-07
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKS 212
Y QAA TGKGPVQNL++HVSDPLHNNLLA L++
Sbjct: 298 YAQAAFTGKGPVQNLVDHVSDPLHNNLLAMLQT 330
>ref|XP_002307004.1| chlorophyll A-B binding family protein [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| chlorophyll A-B binding
family protein [Populus trichocarpa]
Length = 338
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLK 215
Y+QAALTGKGPV+NL+EH+SDPLHNNL + LK
Sbjct: 305 YIQAALTGKGPVENLVEHISDPLHNNLFSTLK 336
>gb|EXB56249.1| Chlorophyll a-b binding protein of LHCII type III [Morus notabilis]
Length = 289
Score = 58.9 bits (141), Expect = 7e-07
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFL 218
Y QAALTGKGP+QNLI+HVSDPLHNNLL+ L
Sbjct: 257 YSQAALTGKGPIQNLIDHVSDPLHNNLLSML 287
>ref|XP_006302513.1| hypothetical protein CARUB_v10020611mg, partial [Capsella rubella]
gi|482571223|gb|EOA35411.1| hypothetical protein
CARUB_v10020611mg, partial [Capsella rubella]
Length = 337
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLK 215
Y QAA TGKGP+QNL++HVSDPLHNNLLA L+
Sbjct: 305 YAQAAFTGKGPIQNLVDHVSDPLHNNLLAMLQ 336
>ref|NP_177783.1| chlorophyll A-B binding family protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative
chlorophyll A-B binding protein; 65434-67056
[Arabidopsis thaliana] gi|332197739|gb|AEE35860.1|
chlorophyll A-B binding family protein [Arabidopsis
thaliana]
Length = 327
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFLKS 212
Y QAA TGKGPVQNL++HVSDPLHNNL+A L++
Sbjct: 295 YAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327
>ref|XP_006390178.1| hypothetical protein EUTSA_v10018862mg [Eutrema salsugineum]
gi|557086612|gb|ESQ27464.1| hypothetical protein
EUTSA_v10018862mg [Eutrema salsugineum]
Length = 326
Score = 58.2 bits (139), Expect = 1e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFL 218
Y QAA TGKGPVQNL++HVSDPLHNNLLA L
Sbjct: 294 YAQAAFTGKGPVQNLVDHVSDPLHNNLLATL 324
>ref|XP_006390176.1| hypothetical protein EUTSA_v10018862mg [Eutrema salsugineum]
gi|567120619|ref|XP_006390177.1| hypothetical protein
EUTSA_v10018862mg [Eutrema salsugineum]
gi|557086610|gb|ESQ27462.1| hypothetical protein
EUTSA_v10018862mg [Eutrema salsugineum]
gi|557086611|gb|ESQ27463.1| hypothetical protein
EUTSA_v10018862mg [Eutrema salsugineum]
Length = 241
Score = 58.2 bits (139), Expect = 1e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFL 218
Y QAA TGKGPVQNL++HVSDPLHNNLLA L
Sbjct: 209 YAQAAFTGKGPVQNLVDHVSDPLHNNLLATL 239
>ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 57.8 bits (138), Expect = 2e-06
Identities = 24/29 (82%), Positives = 29/29 (100%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLA 224
YLQAA+TGKGPVQNL+EH+SDPLHNN+L+
Sbjct: 287 YLQAAVTGKGPVQNLVEHLSDPLHNNILS 315
>ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 57.4 bits (137), Expect = 2e-06
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLAFL 218
Y+QAALTGKGPVQNLI+H+SDP HNNLL L
Sbjct: 294 YVQAALTGKGPVQNLIDHISDPFHNNLLGSL 324
>gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/29 (82%), Positives = 29/29 (100%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLA 224
Y+QAA+TGKGPVQNLIEH+SDPLHNN+L+
Sbjct: 175 YVQAAVTGKGPVQNLIEHLSDPLHNNILS 203
>ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein
SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 57.0 bits (136), Expect = 3e-06
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = -1
Query: 310 YLQAALTGKGPVQNLIEHVSDPLHNNLLA 224
Y+QAA+TGKGPVQNL+EH+SDPLHNN+L+
Sbjct: 283 YIQAAVTGKGPVQNLVEHLSDPLHNNILS 311