BLASTX nr result
ID: Cocculus23_contig00006323
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00006323
(1371 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI33284.3| unnamed protein product [Vitis vinifera] 276 2e-71
ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III s... 276 2e-71
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s... 275 4e-71
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s... 274 6e-71
gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Mor... 264 6e-68
emb|CBI36309.3| unnamed protein product [Vitis vinifera] 264 6e-68
ref|XP_007139345.1| hypothetical protein PHAVU_008G021700g [Phas... 261 7e-67
ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Popu... 260 9e-67
ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citr... 256 2e-65
ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III s... 254 5e-65
ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, p... 254 5e-65
ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III s... 254 6e-65
dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas] 254 6e-65
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s... 254 8e-65
ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Popu... 253 2e-64
ref|XP_007208807.1| hypothetical protein PRUPE_ppa024742mg [Prun... 253 2e-64
ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III s... 252 3e-64
ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III s... 248 3e-63
ref|XP_007023168.1| DNA-directed RNA polymerase III subunit rpc6... 245 3e-62
ref|XP_004303315.1| PREDICTED: DNA-directed RNA polymerase III s... 239 3e-60
>emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 276 bits (705), Expect = 2e-71
Identities = 136/232 (58%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
Frame = +2
Query: 557 SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQD 736
SLKRKRPD + SQ L +AER +Y+ IRSKE +GI+ D+KRETNL D + KSLK+LQ
Sbjct: 69 SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 128
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
KL+KEV + +KG+K++MAVEFEP+ E+TGG WY G+LD ++I LKK C +SKLK
Sbjct: 129 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 188
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT EGI E I K L EC T+QI EI+ ALVLDNE++EVRS+ G++++IP G +CY
Sbjct: 189 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 248
Query: 1097 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+ K P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 249 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 300
>ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 276 bits (705), Expect = 2e-71
Identities = 136/232 (58%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
Frame = +2
Query: 557 SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQD 736
SLKRKRPD + SQ L +AER +Y+ IRSKE +GI+ D+KRETNL D + KSLK+LQ
Sbjct: 8 SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 67
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
KL+KEV + +KG+K++MAVEFEP+ E+TGG WY G+LD ++I LKK C +SKLK
Sbjct: 68 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 127
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT EGI E I K L EC T+QI EI+ ALVLDNE++EVRS+ G++++IP G +CY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187
Query: 1097 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+ K P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 275 bits (702), Expect = 4e-71
Identities = 135/233 (57%), Positives = 172/233 (73%), Gaps = 6/233 (2%)
Frame = +2
Query: 554 LSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQ 733
LSLKRKRPD + SQ L +AER +Y+ IRSKE +GI+ D+KRETNL D + KSLK+LQ
Sbjct: 7 LSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 66
Query: 734 DNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKL 913
KL+KEV + +KG+K++MAVEFEP+ E+TGG WY G+LD ++I LK+ C +SKL
Sbjct: 67 VKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKL 126
Query: 914 KVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLC 1093
KVAT EGI E I K L EC T+QI EI+ ALVLDNE++EVRS+ G++++IP G +C
Sbjct: 127 KVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVC 186
Query: 1094 YKPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
Y+ K PK+GA+ SIPCGVCPRI +CTPDGIISP +C YY KWLDF
Sbjct: 187 YRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSCAYYAKWLDF 239
>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 274 bits (701), Expect = 6e-71
Identities = 135/232 (58%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
Frame = +2
Query: 557 SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQD 736
SLKRKRPD + SQ L +AER +Y+ IRSKE +GI+ D+KRETNL D + KSLK+LQ
Sbjct: 8 SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 67
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
KL+KEV + +KG+K++MAVEFEP+ E+TGG WY G+LD ++I LK+ C +SKLK
Sbjct: 68 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSKLK 127
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT EGI E I K L EC T+QI EI+ ALVLDNE++EVRS+ G++++IP G +CY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187
Query: 1097 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+ K P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Morus notabilis]
Length = 238
Score = 264 bits (675), Expect = 6e-68
Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 4/238 (1%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M R ++ SLKRK+PD +SP L+E ER IY IRSK+ +GI++ D+KR + D +
Sbjct: 1 MSRLQEPSSLKRKQPDSRSPLDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVAN 60
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
K+LKSL+ KL+KEV + +GKK+++A EFEPA E+TGG WYSNG +D IN LK C
Sbjct: 61 KALKSLETKKLIKEVVNIQKRGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQC 120
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
I K +VAT+EGIL+ IRK + +VE T QI+E+V ALVLDNEV+EV+S MG++ +
Sbjct: 121 LKWIYKQRVATLEGILDAIRKSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFDS 180
Query: 1073 IPFGTLCYKPAKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
IP G +CYK K PK+GA++SIPCGVCPRI +CTPDGIISP TC YY++WLDF
Sbjct: 181 IPVGKVCYKSTSKGSRGDPKIGAMSSIPCGVCPRISDCTPDGIISPKTCKYYSQWLDF 238
>emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 264 bits (675), Expect = 6e-68
Identities = 137/265 (51%), Positives = 182/265 (68%), Gaps = 12/265 (4%)
Frame = +2
Query: 458 SALKECLIRTVKNLKNNFYCFFKY-----YMGRERDN-LSLKRKRPDEKSPSQRLSEAER 619
+ LK+ I V L N+ +C + +G R LSLKRKRPD + SQ L +AER
Sbjct: 59 TVLKDTTIHFVSGLSNSDHCSHYFPQVILILGMSRSQGLSLKRKRPDTNAASQPLLDAER 118
Query: 620 KIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQDNKLVKEVSHYLNKGKKYFMAV 799
+Y+ IRSKE +GI+ D+KRETNL D + KSLK+LQ KL+KEV + +KG+K++MAV
Sbjct: 119 VLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKKLIKEVVNIQSKGRKHYMAV 178
Query: 800 EFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLKVATIEGILELIRKLRLLHVEC 979
EFEP+ E+TGG WY G+LD ++I LK+ C +SKLKVAT EGI E I K L EC
Sbjct: 179 EFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLKVATAEGISESINKTGLCATEC 238
Query: 980 DTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCYKPAKK------LPKVGALTSI 1141
T+QI EI+ ALVLDNE++EVRS+ G++++IP G +CY+ K PK+GA+ SI
Sbjct: 239 STQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCYRCTNKGGLGGGGPKIGAMASI 298
Query: 1142 PCGVCPRIHECTPDGIISPVTCIYY 1216
PCGVCPRI +CTPDGIISP + ++Y
Sbjct: 299 PCGVCPRITQCTPDGIISPKSSVHY 323
>ref|XP_007139345.1| hypothetical protein PHAVU_008G021700g [Phaseolus vulgaris]
gi|561012478|gb|ESW11339.1| hypothetical protein
PHAVU_008G021700g [Phaseolus vulgaris]
Length = 239
Score = 261 bits (666), Expect = 7e-67
Identities = 128/239 (53%), Positives = 170/239 (71%), Gaps = 5/239 (2%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M + +++ SLKRKR D S +++ ER +Y I SK+ +GI+ GD+KRETNL D + K
Sbjct: 1 MSQLQESSSLKRKRQDLALVSGSMTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
KSLK LQ L+KEV + NKG+K++MA EFEP+ E+TGG WY+ GSLD DFIN +K+ C
Sbjct: 61 KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGDWYTQGSLDTDFINLVKEVC 120
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
CI + KVAT +G+LE RK + VE +QI EI+ ALVLD+E+ EV+ST +GD+++
Sbjct: 121 LKCIFRQKVATHDGVLEWSRKSGVFTVEVTAQQIDEILRALVLDDEIEEVKSTGLGDFSS 180
Query: 1073 IPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+P G +CY+ K K GA+ SIPCGVCPRI+ CTPDGIISP TC+YY KWLDF
Sbjct: 181 VPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| hypothetical protein
POPTR_0018s04220g [Populus trichocarpa]
Length = 239
Score = 260 bits (665), Expect = 9e-67
Identities = 126/239 (52%), Positives = 169/239 (70%), Gaps = 5/239 (2%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M R + SLKRKRP+ SP+Q L+E ER +Y+ IRSK+ +GI+ D+K+E L D +
Sbjct: 1 MSRLQGPSSLKRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVN 60
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
KSLK+LQ KL+KEV + NKG+K+FMA EFEP+ E++GG WY GSLD +FI +LK+ C
Sbjct: 61 KSLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLC 120
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
I + VAT+E + + I +V+ +QI+EI+ L+LDN ++EV+S MG++A+
Sbjct: 121 KRQIERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFAS 180
Query: 1073 IPFGTLCYKPAKKL-----PKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
IPFG +CYK K+ PK GAL SIPCGVCPRI +CTPDGIISP TC+YY KWLDF
Sbjct: 181 IPFGEVCYKYISKVGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLDF 239
>ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citrus clementina]
gi|557529238|gb|ESR40488.1| hypothetical protein
CICLE_v10026399mg [Citrus clementina]
Length = 233
Score = 256 bits (654), Expect = 2e-65
Identities = 126/231 (54%), Positives = 165/231 (71%), Gaps = 7/231 (3%)
Frame = +2
Query: 563 KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRE--TNLSDPLFKKSLKSLQD 736
KRKRPD +PS L++ ER IY+ IRSK+ +GI+ D+KRE NL D + KS+KSLQ+
Sbjct: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
L+KEV + +KGKK+ MAVEFEP+ E++GG WYS GSLD +FI +K C I KLK
Sbjct: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT+EGI + I++ V+ +QI+EIV ALVLDN+++EV+S G++ NIP G +CY
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
Query: 1097 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
K K PK G+L SIPCGVCP+I+ C PDG+ISP TC+YYTKWLDF
Sbjct: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
>ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Citrus
sinensis]
Length = 233
Score = 254 bits (650), Expect = 5e-65
Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 7/231 (3%)
Frame = +2
Query: 563 KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRE--TNLSDPLFKKSLKSLQD 736
KRKRP+ +PS L++ ER IY+ IRSK+ +GI+ D+KRE NL D + KS+KSLQ+
Sbjct: 3 KRKRPESNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
L+KEV + +KGKK+ MAVEFEP+ E++GG WYS GSLD +FI +K C I KLK
Sbjct: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT+EGI + I++ V+ +QI+EIV ALVLDN+++EV+S G++ NIP G +CY
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
Query: 1097 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
K K PK G+L SIPCGVCP+I+ CTPDG+ISP TC+YYT WLDF
Sbjct: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICTPDGVISPKTCVYYTTWLDF 233
>ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis] gi|223549406|gb|EEF50894.1| DNA-directed RNA
polymerase III subunit F, putative [Ricinus communis]
Length = 236
Score = 254 bits (650), Expect = 5e-65
Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 5/231 (2%)
Frame = +2
Query: 557 SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQD 736
+LKRK+P+ SP+Q L+E E +Y I SK+ +GI+ D+KRETNL D + KSLK LQ
Sbjct: 6 ALKRKQPESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQA 65
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
L+KEV + NKG+K++MA EFEP+ E+TGG WY G+LD +FI LK+ C+ + KLK
Sbjct: 66 KNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKLK 125
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT+EGI + I++ + + E +QI+EIV ALVLDN ++EV+S M +++ IP G +CY
Sbjct: 126 VATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFIPIGKVCY 185
Query: 1097 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
K K P++GA+ SIPCGVCPRI +CTPDGIISP TC+YY+KWLDF
Sbjct: 186 KCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQTCVYYSKWLDF 236
>ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform
X1 [Citrus sinensis]
Length = 252
Score = 254 bits (649), Expect = 6e-65
Identities = 127/244 (52%), Positives = 170/244 (69%), Gaps = 8/244 (3%)
Frame = +2
Query: 527 YYMGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRS-KEGLGIFLGDIKRE--TNLS 697
Y +G + + KRKRPD +PS L++ ER IY+ IRS K+ +GI+ D+KRE NL
Sbjct: 9 YLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLP 68
Query: 698 DPLFKKSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINT 877
D + KS+KSLQ+ L+KEV + NKGKK+ MAVEFEP+ E++GG WYS GSLD +FI
Sbjct: 69 DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKV 128
Query: 878 LKKACSMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEM 1057
+K C I KLKVAT+EGI + I++ V+ +QI+EIV A+VLDN+++EV+S
Sbjct: 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
Query: 1058 GDYANIPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTK 1222
G++ NIP G +CYK K PK G+ S+PCGVCP+I+ CTPDG+ISP TC+YYTK
Sbjct: 189 GEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248
Query: 1223 WLDF 1234
WLDF
Sbjct: 249 WLDF 252
>dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 254 bits (649), Expect = 6e-65
Identities = 124/228 (54%), Positives = 161/228 (70%), Gaps = 4/228 (1%)
Frame = +2
Query: 563 KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQDNK 742
KRK+P+ S +Q L+E E+ +Y IRSK+ +GI+ D+KRETNL D + KSLK LQ
Sbjct: 8 KRKQPESNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVVNKSLKVLQAKN 67
Query: 743 LVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLKVA 922
L+KEV + NKG+KY+MA EFEP+ E+TGGTWY G+LD FI LK C I KLKVA
Sbjct: 68 LIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQIEKLKVA 127
Query: 923 TIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCYKP 1102
T+E + + I + + V +QI+EI+ ALVLDN+V EV+S MG++A+IP G +CYK
Sbjct: 128 TVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFASIPVGKVCYKS 187
Query: 1103 AKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
K PK+GA+ SIPCGVCPRI CTP+GIISP TC+YY KWL+F
Sbjct: 188 IGKGSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235
>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Glycine
max]
Length = 239
Score = 254 bits (648), Expect = 8e-65
Identities = 125/239 (52%), Positives = 166/239 (69%), Gaps = 5/239 (2%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M + + SLKRKR D + L++ ER +Y I SK+ +GI+ GD+KRETNL D + K
Sbjct: 1 MSHLQGSSSLKRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
KSLK LQ L+KEV + NKG+K++MA EFEP+ E+TGG WY+ G LD DFIN +K C
Sbjct: 61 KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVC 120
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
I + KVAT +G++E RK + +VE T+QI EI+ LVLD+E++EV+ST GD+++
Sbjct: 121 LKYIFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSS 180
Query: 1073 IPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+P G +CY+ K K GA+ SIPCGVCPRI+ CTPDGIISP TC+YY KWLDF
Sbjct: 181 VPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Populus trichocarpa]
gi|550346475|gb|EEE82426.2| hypothetical protein
POPTR_0001s04090g [Populus trichocarpa]
Length = 291
Score = 253 bits (645), Expect = 2e-64
Identities = 125/250 (50%), Positives = 169/250 (67%), Gaps = 10/250 (4%)
Frame = +2
Query: 515 CFFKYY-----MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIK 679
C F++ M R + SLKRKRP+ SP Q L+E ER +Y+ IRSK+ +GI+ D+K
Sbjct: 42 CLFRFDVLSVGMSRVQGPSSLKRKRPELNSPVQSLTEHERILYDVIRSKQDIGIWTRDMK 101
Query: 680 RETNLSDPLFKKSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLD 859
+E L D + KSLK+L+ L+KEV + NKG+K+FMA EFEP+ E++GG WY GSLD
Sbjct: 102 KEAKLPDNVVNKSLKALRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLD 161
Query: 860 IDFINTLKKACSMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLE 1039
+FI +L++ C I K VAT+E + + I +V+ +QI+EI+ L+LDN ++E
Sbjct: 162 TEFIESLRQLCKRQIEKKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIME 221
Query: 1040 VRSTEMGDYANIPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVT 1204
V+S MG++A+IPFG +CY+ K PK GAL SIPCGVCPRI CTPDGIISP T
Sbjct: 222 VKSNGMGEFASIPFGKVCYRYISKGALGGEPKAGALASIPCGVCPRISHCTPDGIISPKT 281
Query: 1205 CIYYTKWLDF 1234
C+YY KWLDF
Sbjct: 282 CVYYQKWLDF 291
>ref|XP_007208807.1| hypothetical protein PRUPE_ppa024742mg [Prunus persica]
gi|462404542|gb|EMJ10006.1| hypothetical protein
PRUPE_ppa024742mg [Prunus persica]
Length = 236
Score = 253 bits (645), Expect = 2e-64
Identities = 122/231 (52%), Positives = 167/231 (72%), Gaps = 5/231 (2%)
Frame = +2
Query: 557 SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKSLQD 736
+LKRK+PD SPS+ L+E E+ +Y IRSK+ +GI+ D+K+E NL D L KS+KSLQ
Sbjct: 6 ALKRKQPDSSSPSESLTEHEKIVYSVIRSKQDMGIWTRDMKKEANLPDNLVGKSIKSLQA 65
Query: 737 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 916
L+KEV + +KG+K++MA EFEP+ E+TGG WYSNG+LD +I+ +K + I +LK
Sbjct: 66 KNLIKEVVNVQSKGRKHYMAAEFEPSKELTGGDWYSNGTLDKYYISCVKDGFAKIIYQLK 125
Query: 917 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 1096
VAT+EGI + ++K + +QI+EI+ LVLD V EV+ST MG++ + P G +CY
Sbjct: 126 VATLEGISDEVKKSGIFKTSFTKQQIEEILRVLVLDKRVTEVKSTGMGEFGSFPVGKVCY 185
Query: 1097 KP-----AKKLPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
K +K+ PKVGA+ SIPCGVCPRI +CTPDGIISP TC+Y+TKWLDF
Sbjct: 186 KSTSKGGSKREPKVGAMASIPCGVCPRISQCTPDGIISPRTCVYFTKWLDF 236
>ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like isoform
X2 [Citrus sinensis]
Length = 234
Score = 252 bits (643), Expect = 3e-64
Identities = 125/232 (53%), Positives = 165/232 (71%), Gaps = 8/232 (3%)
Frame = +2
Query: 563 KRKRPDEKSPSQRLSEAERKIYECIRS-KEGLGIFLGDIKRE--TNLSDPLFKKSLKSLQ 733
KRKRPD +PS L++ ER IY+ IRS K+ +GI+ D+KRE NL D + KS+KSLQ
Sbjct: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 62
Query: 734 DNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKL 913
+ L+KEV + NKGKK+ MAVEFEP+ E++GG WYS GSLD +FI +K C I KL
Sbjct: 63 NKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 122
Query: 914 KVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLC 1093
KVAT+EGI + I++ V+ +QI+EIV A+VLDN+++EV+S G++ NIP G +C
Sbjct: 123 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 182
Query: 1094 YKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
YK K PK G+ S+PCGVCP+I+ CTPDG+ISP TC+YYTKWLDF
Sbjct: 183 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 234
>ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis
sativus] gi|449506569|ref|XP_004162785.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
Length = 243
Score = 248 bits (634), Expect = 3e-63
Identities = 125/235 (53%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Frame = +2
Query: 557 SLKRKRPD---EKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSLKS 727
SLKRKRPD + S L E+ +Y+ I SK+ +GI D+KRET ++ + KSLKS
Sbjct: 9 SLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKS 68
Query: 728 LQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCIS 907
LQ L+K V HY NKGKK++++ +FEPA E+TGG WY +G LD D+INTLK+ C+ I
Sbjct: 69 LQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ 128
Query: 908 KLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGT 1087
+ K+ TIEGI+E ++ VE EQI+EIV+ALVLDN+V+EV+S+ G++ IP G
Sbjct: 129 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 188
Query: 1088 LCYK------PAKKLPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
+CYK K PK GA+ SIPCGVCPRI CTP+GIISP TC+YYTKWLDF
Sbjct: 189 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243
>ref|XP_007023168.1| DNA-directed RNA polymerase III subunit rpc6, putative isoform 1
[Theobroma cacao] gi|590615245|ref|XP_007023169.1|
DNA-directed RNA polymerase III subunit rpc6, putative
isoform 1 [Theobroma cacao] gi|508778534|gb|EOY25790.1|
DNA-directed RNA polymerase III subunit rpc6, putative
isoform 1 [Theobroma cacao] gi|508778535|gb|EOY25791.1|
DNA-directed RNA polymerase III subunit rpc6, putative
isoform 1 [Theobroma cacao]
Length = 237
Score = 245 bits (626), Expect = 3e-62
Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 5/239 (2%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M R + +LKRKRP S S L+E ER +++ I+ K+ +GI D+KRE NL D L
Sbjct: 1 MSRLQGPNALKRKRPGATSDS--LTEHERIVHDVIQGKQDMGISQRDMKREINLPDNLVT 58
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
K LKSL L+KEV + N+G+K+F++ EFEP++E+TGG WY GSLD ++IN LK+ C
Sbjct: 59 KCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYVEGSLDTEYINVLKEQC 118
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
I LKVAT+EG+ + I++ + +E +QI+EIV ALVLDNEV+EV+S+ G++A+
Sbjct: 119 WRKIYGLKVATLEGVTDAIKRSNVSQIELSKQQIEEIVKALVLDNEVMEVKSSGTGEFAS 178
Query: 1073 IPFGTLCYKPAKKL-----PKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
IP G +CYK K PKVG + SIPCGVCP+I CTPDGIISP TC+YY KWLDF
Sbjct: 179 IPVGKVCYKCIGKRGYGGEPKVGTMASIPCGVCPQISHCTPDGIISPKTCVYYKKWLDF 237
>ref|XP_004303315.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like isoform
1 [Fragaria vesca subsp. vesca]
gi|470134993|ref|XP_004303316.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc6-like isoform 2 [Fragaria
vesca subsp. vesca] gi|470134995|ref|XP_004303317.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc6-like isoform 3 [Fragaria vesca subsp. vesca]
Length = 236
Score = 239 bits (609), Expect = 3e-60
Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 4/238 (1%)
Frame = +2
Query: 533 MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 712
M R + +LKRKR D +S S L+E E K+Y+ IRSK +G+ + D++RET L LF
Sbjct: 1 MSRSQQPSALKRKRLDSQSGS--LTEHESKLYDAIRSKTDMGMSVQDLRRETGLQTNLFT 58
Query: 713 KSLKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 892
K++K+LQ +L+KEV ++ NK +K++MA EFEP+ E+TGG WY NG D DFI +K+
Sbjct: 59 KAIKTLQAKQLIKEVKNFDNKTRKHYMATEFEPSKEITGGAWYDNGQFDTDFIKVVKREL 118
Query: 893 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 1072
I K+AT+EGI I K + L V T+++K+I+ ALVLDNEVL+V ST MG++
Sbjct: 119 VKVIYDQKIATLEGISNAISKKKFLTVNLSTQELKQILEALVLDNEVLKVVSTGMGEFVG 178
Query: 1073 IPFGTLCYKPAKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 1234
I G CYK K+ P + ++ SIPCGVCPRI++CTPDGIISP+TC Y+ KWLDF
Sbjct: 179 IKAGKDCYKCCKRGVRGEPNLASMASIPCGVCPRINQCTPDGIISPITCEYFKKWLDF 236