BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00005968
         (3345 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   718   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   725   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   722   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   729   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   701   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   701   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   699   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   699   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   724   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       719   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   682   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   700   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   704   0.0  
ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phas...   692   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   677   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   677   0.0  
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...   696   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     695   0.0  
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   694   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     699   0.0  

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  718 bits (1854), Expect(2) = 0.0
 Identities = 347/488 (71%), Positives = 405/488 (82%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P ++NIAALRHICSYK PVFD +K LK VQ+WLLKNP    S +  DD VE+R
Sbjct: 355  FDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +L ITPT+AYCLPP VELSNRVLR+YK+++D+FLRVTF DEG+Q +N+N L+YY APIV+
Sbjct: 415  RLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            D+TSNSFSQKT IF RV +I+  GF+LCGR+Y+FLAFS+NQLRD SAWFFAED    VS 
Sbjct: 475  DITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSK 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            IR WMGKFT+RN+AKC ARMG CFSSTYAT+EVP  E   DLPDI+RN Y+FSDGIGM+T
Sbjct: 535  IRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMIT 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+AEKL+L  NPPCAYQIR AGCKGV+A WP   DG RLSLR SMNKF S+H  +
Sbjct: 595  PDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS L+V D +F +MQ +MV KL+QM  +ADVAF++VT SC
Sbjct: 655  EICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GNTAA+MLSAGF P+TE HL  ML+ +R AQL  L  K RIFVPSGRWLMGCLDELG
Sbjct: 715  AEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE+GQCFIQVS PSLE+CF KHG  FSES K   V+KGTVV+AKNPCLHPGDIRILEAV
Sbjct: 775  VLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAV 834

Query: 3321 DAPGLHHL 3344
            DAP LHHL
Sbjct: 835  DAPELHHL 842



 Score =  400 bits (1029), Expect(2) = 0.0
 Identities = 192/324 (59%), Positives = 239/324 (73%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +KE +VTQVSFGGF K +TA  L  +L+ E+G +WRCRLK SWTPP+SYP F +T+    
Sbjct: 7    EKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            QR D Y +VEPHAFVHF SP++ T A N AG  EL FNG P+KVS+G E+PF +N+RRRT
Sbjct: 67   QRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRT 126

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
              PFK SDV VEIGTLVS++EF VGW+ P SGVDFLVDPFD  CK  FT++TAF FK T 
Sbjct: 127  TIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTT 186

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +IRCDFKLEFLVR+I EIKQ T+             P ++YRTADDDI V VPFDLL
Sbjct: 187  EHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLL 246

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVR 1788
            DDDDPWIRTTDFTP GAIGRCNS R+S+ PR+G KLK+A+ +L++R++  D +++ L V 
Sbjct: 247  DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVT 306

Query: 1789 DEPEFDYGTPNPFFCIQYKGEISF 1860
             EPE++    +PFFCI ++  + F
Sbjct: 307  AEPEYEMPMSDPFFCIHHEEGVDF 330


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  725 bits (1871), Expect(2) = 0.0
 Identities = 352/488 (72%), Positives = 411/488 (84%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P E+N+AAL+HI  Y+RPVFD YK+LK+ QEWLLKNP    + +  DD  E+R
Sbjct: 355  FDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYK+V+DRFLRVTF DEG+Q +NSN L+Y+ APIV+
Sbjct: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
             +TS SF QKT IF RV +I+ +GF+LCGR+Y+FLAFS+NQLRD SAWFFAED ++ V  
Sbjct: 475  AITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMA 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I+ WMGKFT++N+AKC ARMG CFSSTYATIEVP EE+N DLPDIKRNGY FSDGIGM+T
Sbjct: 535  IKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMIT 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+AEKL+   +PPCAYQIR AGCKGV+A WP + DG RLSLR SMNKF S+H I+
Sbjct: 595  PDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTIL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLSALNV D VF +MQ+LMV KL+QML ++DVAF+++T SC
Sbjct: 655  EICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GN AA+MLSAGFKPQ E HL  ML+ VR AQL  L  KARIFVPSGRWLMGCLDELG
Sbjct: 715  AEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCFIQVS   LENCF KHG +FSE+ KN  V+KGTVVIAKNPCLHPGDIRILEAV
Sbjct: 775  VLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAV 834

Query: 3321 DAPGLHHL 3344
            DAPGLHHL
Sbjct: 835  DAPGLHHL 842



 Score =  382 bits (980), Expect(2) = 0.0
 Identities = 181/334 (54%), Positives = 243/334 (72%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            ME  G+ K   E +VTQVS GGF  ++TA  L ++LE+E+G++WRCRLK SWTPP+SYP 
Sbjct: 1    METEGSAK---ETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPN 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F +T+     RT++Y +VEPHAFVHF  P++ T A++ A R EL  N   LK S+G E+P
Sbjct: 58   FEITDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            F +N+RRR  +PFK S V VEIGTLVS++EF+VGW+ P +GVDFLVDPFD TC+  F++ 
Sbjct: 118  FTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRN 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
            TAF FK T    +I+CDFK+EFLVR+I EIKQ T              P ++YRTADDDI
Sbjct: 178  TAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPND 1761
             V+VPFDLLDDDDPWIRTTDFT  GAIGRC+S R+S+ PR+G KL++A+ +LK+R++  +
Sbjct: 238  EVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEE 297

Query: 1762 IVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
             +++ + +RDEP+F     +PFFCI +K  I+F+
Sbjct: 298  YLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFD 331


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  722 bits (1863), Expect(2) = 0.0
 Identities = 349/488 (71%), Positives = 409/488 (83%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLRS+P+E+N+AAL+H+CSY+ PVFD  + LK+VQ+WLLKNP  +   +  DD  EVR
Sbjct: 354  FHLLRSQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVR 413

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYKEV+DRFLRVTF DEGMQK+NSNVL+YY+APIVK
Sbjct: 414  RLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVK 473

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
            ++TSNSF QKT++F R  TI+  GF+LCGR+YTFLAFS+NQLRD SAWFFAE  ++ V  
Sbjct: 474  EITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGK 533

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMGKF ++NVAKC ARMG CFSSTYAT+EV   E+N D+PDIKRNGYVFSDGIGM+T
Sbjct: 534  ITSWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMIT 592

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L++E+AEKL+L  NPPCAYQIR AGCKGV+A WP K DGFRLSLR SMNKF S H  +
Sbjct: 593  PDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTL 652

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTR+QPGFLNRQIITLLS LNV D +F RMQ+ MV KL+QML + DVAF+++T SC
Sbjct: 653  EICSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASC 712

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GN AA+MLSAGFKPQTE HL  ML+ ++ AQL  L  KARIFV SGRWLMG LDELG
Sbjct: 713  AEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELG 772

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCF+QVSTP LE+CF+KHG  F++  +N  VIKG VVIAKNPCLHPGDIRILEAV
Sbjct: 773  VLEQGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAV 832

Query: 3321 DAPGLHHL 3344
            DAPGLHHL
Sbjct: 833  DAPGLHHL 840



 Score =  383 bits (984), Expect(2) = 0.0
 Identities = 186/321 (57%), Positives = 235/321 (73%)
 Frame = +1

Query: 901  IVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENFQRTD 1080
            +VTQVSFGGF  +  A  L  +LE E+G+++RCRLK SWTPP+S+P F + N  + +RTD
Sbjct: 11   VVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI-NTADVKRTD 69

Query: 1081 NYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRTISPF 1260
            +Y +VEPHAFVHF SP++VT A++ AGR EL FN  PLKVS+G E+P+F+N+RRRT +PF
Sbjct: 70   DYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPF 129

Query: 1261 KFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTNNITM 1440
            K SDV VEIG+LV Q+EF+  W+ P  GVDF+VDPFD TCK  FT +TAF FK T    +
Sbjct: 130  KLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAV 189

Query: 1441 IRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLLDDDD 1620
            I+CDFK+EFLVREI EIKQ T+             P + YRTADDDI  +VPFDLLDDDD
Sbjct: 190  IKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDD 249

Query: 1621 PWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVRDEPE 1800
            PWIRTTDFTP GAIGRCNS R+ + PR+G KLK+AM YL++R++    +K    ++DEP+
Sbjct: 250  PWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQDEPD 309

Query: 1801 FDYGTPNPFFCIQYKGEISFE 1863
            F      PFF IQY+  ISFE
Sbjct: 310  FGMSNTEPFFSIQYEEGISFE 330


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  729 bits (1881), Expect(2) = 0.0
 Identities = 347/488 (71%), Positives = 414/488 (84%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++  E+N++AL+HIC+Y+RPVF+ Y+ LK VQEWLLKNP+   + +   D VE+R
Sbjct: 358  FDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIR 417

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYK+V+DRFLRVTF DEG+Q++NSNVL+YY+APIV+
Sbjct: 418  RLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVR 477

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
            D+TSNSF QKT IF RV +I+ +GF+LCGR+Y+FLAFS NQLRD SAWFF+E+ ++ V D
Sbjct: 478  DITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLD 537

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            ++ WMGKFT+RN+AKC ARMG CFSSTYATIEVP EE+N DLPDI+RNGYVFSDGIG++T
Sbjct: 538  VKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIIT 597

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+AEKL+L  +PPCAYQIR AGCKGV+A WPGK DG RLSLR SMNKF S+H  +
Sbjct: 598  PDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTL 657

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS LNV D VF +MQ+ MV KL+QM  N+DVAF+++T SC
Sbjct: 658  EICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASC 717

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            A++GN AA+MLSAGFKP  E HL  ML+ VR AQL DL  K RIFVPSGRWLMGCLDELG
Sbjct: 718  ADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELG 777

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            +LE GQCFIQVS  SLE CF KHG +FSE+ KN  VIKGTVVIAKNPCLHPGD+R+LEAV
Sbjct: 778  MLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAV 837

Query: 3321 DAPGLHHL 3344
            D PGLHHL
Sbjct: 838  DVPGLHHL 845



 Score =  371 bits (953), Expect(2) = 0.0
 Identities = 179/337 (53%), Positives = 240/337 (71%), Gaps = 3/337 (0%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            ME  G+ K   E +VTQVS GGF  ++TA  L ++L++ +G++WRCRLK SWTPP+SYP 
Sbjct: 1    MEAEGSAK---ETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPN 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F +T+    +RT++Y +V PHAFVHF  P++ T A+N +GR EL  N   LKVS+G ++P
Sbjct: 58   FEITDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            F +N+RRRT +PFK SDV  EIG LVS++EF+VGW+ P SGVDFLVDPFD TCK  F++ 
Sbjct: 118  FTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRN 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
            TAF  K T+   +I+CDFK+EFLVR+I EI Q T              P ++YRTADDDI
Sbjct: 178  TAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQI--- 1752
               VPFDLLDDDDPWIRTTDFT  GAIGRC+S R+S+ PR+G KL++A+ YLK+R++   
Sbjct: 238  EAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVL 297

Query: 1753 PNDIVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
              +  ++++ + DEP+F     +PFFCI +K  I+FE
Sbjct: 298  QEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFE 334


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  701 bits (1809), Expect(2) = 0.0
 Identities = 345/488 (70%), Positives = 399/488 (81%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR +PRE+N+AAL+HI SY+RPVFD YK LK V +WLL+NP    S +  DD VE+R
Sbjct: 355  FNLLRDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKA+CL P VELSNRVLRKYKEV+DRFLRVTF DEGMQ +N+NVL+YY A IV+
Sbjct: 415  RLVITPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            DVTS  FSQKT +F RV +I+  GF+LCGR+Y+FLAFS NQLRD SAWFFAED    V  
Sbjct: 475  DVTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQ 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I RWMGKFT+RN+AKC ARMG CFSSTYAT+EVP  E+N  LPDI+RNGYVFSDGIG +T
Sbjct: 535  ILRWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKIT 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+A+KL+L  NPPCAYQIR AGCKGV+A WP + DG RLSLR SMNKF S H  +
Sbjct: 595  PDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS   V D VF  MQ+ MV KL+++L + DVAFE++T SC
Sbjct: 655  EICSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            +E+GN AA+MLSAGFKPQTE HL  +L+ VR +QL  L  KARIFVPSGRWLMG LDELG
Sbjct: 715  SEQGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCFIQVS PS+ENCF KHG  F+E+ KNF VI+G VVIAKNPCLHPGDIRILEAV
Sbjct: 775  VLEQGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAV 834

Query: 3321 DAPGLHHL 3344
            DAPGLHHL
Sbjct: 835  DAPGLHHL 842



 Score =  394 bits (1011), Expect(2) = 0.0
 Identities = 186/334 (55%), Positives = 244/334 (73%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            ME  G+ KD    +VTQVS GGFG+++ A  L ++ + EVGV+WRCRLK SWTPP+SYP 
Sbjct: 1    MESQGSEKDT---VVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPN 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F + +    QRTD+Y+KVEPHAFVHF SP   T A++ AGR EL+FN   LKVS+G E+P
Sbjct: 58   FEILDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            +++N+RRR  +PFK SDVC++IG +VS++EF+VGW+ P  GVDFLVDPFD TCK  F+++
Sbjct: 118  YYLNRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRD 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
            TAF FK T    +I+CDFK+EFLVR+I EIKQ T              P ++YRTADD+I
Sbjct: 178  TAFSFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPND 1761
              +VPFDLLDDDD WIRTTDFTP GAIGRCN+ R+ + PR+G KLK+A+ YL+++++P D
Sbjct: 238  EESVPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMD 297

Query: 1762 IVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
             V+  L + DEP+F     +PF+CI YK  I FE
Sbjct: 298  YVRWPLRISDEPDFGRSMSDPFYCIDYKEGIPFE 331


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  701 bits (1808), Expect(2) = 0.0
 Identities = 346/488 (70%), Positives = 402/488 (82%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLRS+ +++NIAAL+HICSY+ PVFD Y+ LK+V +WLLKNP  + S +  DD VEVR
Sbjct: 357  FDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVR 416

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITP+KAYCLPP VELSNRVLR YKEVSDRFLRVTF DEGMQ +N+NVL+YY+APIVK
Sbjct: 417  RLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVK 476

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
             +TSNSF QKT +F RV TI+  GF+LCGR+Y+FLAFS+NQLRD SAWFFAED    V  
Sbjct: 477  VITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRA 536

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I+ WMGKFT+RNVAKC ARMG CFSSTYAT+EVP  E+  +LPDIKRNGY FSDGIG + 
Sbjct: 537  IKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIV 595

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ME+AEKL+L   P  AYQIR AGCKGV+A WP  +DG RLS R SMNKF+S H I+
Sbjct: 596  PDLAMEVAEKLKLEGTPS-AYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTIL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQI+TLLSALNV D +F +MQ+ M+ KL+QML + DVAF+++  SC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GNTAA+MLSAGFKPQTE HL  ML+ +R AQ   L  KARIFVPSGRWLMGCLDELG
Sbjct: 715  AEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCFIQVS+PSLENCF KHG  FS + KN  VIKG V IAKNPCLHPGD+RILEAV
Sbjct: 775  VLEQGQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAV 833

Query: 3321 DAPGLHHL 3344
            DAPGL HL
Sbjct: 834  DAPGLEHL 841



 Score =  386 bits (991), Expect(2) = 0.0
 Identities = 193/335 (57%), Positives = 242/335 (72%), Gaps = 2/335 (0%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            ME  G+ KD   M+VTQ+S GGF +Y+TA  L+ +LE  +G + RCRLK S TPP+SYP 
Sbjct: 1    MESEGSEKD---MVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPD 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F + +    +RT++Y+KVEPHAFVHF SPEA T AL+ AG+ EL  +G PLKVS+G E+P
Sbjct: 58   FEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            F +N+RRRT  PFKF DV +EIG LVS++E++ GW+ P+SGVDFLVDPFD TCK  FT++
Sbjct: 118  FHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKD 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
            TAF FK      +I+C+FK+EFLVREI E++Q  +             P ++YRTADDDI
Sbjct: 178  TAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIP-- 1755
              TVPFDLLDDDDPWIRTTDFT  GAIGRCNS RIS+ PRYG KLK+AM YL+ R++   
Sbjct: 238  EETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVL 297

Query: 1756 NDIVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISF 1860
             D  K QL VRDEP+F     +PFFCIQ+K  I F
Sbjct: 298  EDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDF 332


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  699 bits (1803), Expect(2) = 0.0
 Identities = 344/489 (70%), Positives = 406/489 (83%), Gaps = 2/489 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR + RE+N+AAL+HI SYK PVFD  K LK+VQEWLLK+P+     +  DD VEVR
Sbjct: 355  FDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYK+++DRFLRVTF DEG+Q +N+NVLSY+IAPIV+
Sbjct: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            D+T NSFSQKT +F RV +I+  GF+LCGR+++FLAFS++QLRD SAWFF+ED    V D
Sbjct: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I++WMG+FTD+N+AKC ARMG CFSSTYAT+EVP  E++ +LPDIKRNGYVFSDGIG +T
Sbjct: 535  IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKIT 594

Query: 2601 PELSMEIAEKLQLTANPP-CAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNI 2777
            P+L+ME+A+KL+L  NPP CAYQIR AGCKGV+A WP K DG R+SLR SMNKF S H  
Sbjct: 595  PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTT 654

Query: 2778 VEVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLS 2957
            +E+ SWTRFQPGFLNRQIITLLS LNV D +F  MQD M+ KL+QML ++DVAFE++T +
Sbjct: 655  LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAA 714

Query: 2958 CAEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDEL 3137
            CAE+GNTAA+MLSAGF PQTE HL  ML+ +R AQL  L  KARIFVP+GRWLMGCLDEL
Sbjct: 715  CAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774

Query: 3138 GVLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEA 3317
            GVLE GQCFIQVS P L NCFSKHG  F+E+ K   VIKG VVIAKNPCLHPGDIRILEA
Sbjct: 775  GVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEA 833

Query: 3318 VDAPGLHHL 3344
            VD P LHHL
Sbjct: 834  VDHPELHHL 842



 Score =  379 bits (972), Expect(2) = 0.0
 Identities = 186/334 (55%), Positives = 237/334 (70%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            MEP G    +K ++  QVSFGGF + + A  L  +LE EVG +WRCRLK S TP +SYP 
Sbjct: 1    MEPEGR---EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPD 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F VTN    ++TD+YEKVEPHAFVHF  P  VTRA++ AGR EL  NG  LKVS+G E+P
Sbjct: 58   FSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            F +N+R RT +PFK  DVCVEIGTLVS++EF+V W+ PASG DFLVDPFD TCK  FT++
Sbjct: 118  FRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRD 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
             AF  K +    +I+C+FK+EFLVREI  +KQ + +            P ++YRTADDDI
Sbjct: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPND 1761
             V VPFD+LDDDDPWIRTTDFTP GAIGRCNS RIS+S R+  KL + + YL +R++  D
Sbjct: 238  LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297

Query: 1762 IVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
             + + + +R+EP+F+    +PFFCI Y+  ISFE
Sbjct: 298  SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFE 331


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  699 bits (1803), Expect(2) = 0.0
 Identities = 344/489 (70%), Positives = 406/489 (83%), Gaps = 2/489 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR + RE+N+AAL+HI SYK PVFD  K LK+VQEWLLK+P+     +  DD VEVR
Sbjct: 355  FDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYK+++DRFLRVTF DEG+Q +N+NVLSY+IAPIV+
Sbjct: 415  RLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            D+T NSFSQKT +F RV +I+  GF+LCGR+++FLAFS++QLRD SAWFF+ED    V D
Sbjct: 475  DITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLD 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I++WMG+FTD+N+AKC ARMG CFSSTYAT+EVP  E++ +LPDIKRNGYVFSDGIG +T
Sbjct: 535  IKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKIT 594

Query: 2601 PELSMEIAEKLQLTANPP-CAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNI 2777
            P+L+ME+A+KL+L  NPP CAYQIR AGCKGV+A WP K DG R+SLR SMNKF S H  
Sbjct: 595  PDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTT 654

Query: 2778 VEVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLS 2957
            +E+ SWTRFQPGFLNRQIITLLS LNV D +F  MQD M+ KL+QML ++DVAFE++T +
Sbjct: 655  LEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAA 714

Query: 2958 CAEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDEL 3137
            CAE+GNTAA+MLSAGF PQTE HL  ML+ +R AQL  L  KARIFVP+GRWLMGCLDEL
Sbjct: 715  CAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDEL 774

Query: 3138 GVLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEA 3317
            GVLE GQCFIQVS P L NCFSKHG  F+E+ K   VIKG VVIAKNPCLHPGDIRILEA
Sbjct: 775  GVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEA 833

Query: 3318 VDAPGLHHL 3344
            VD P LHHL
Sbjct: 834  VDHPELHHL 842



 Score =  379 bits (972), Expect(2) = 0.0
 Identities = 186/334 (55%), Positives = 237/334 (70%)
 Frame = +1

Query: 862  MEPAGNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPI 1041
            MEP G    +K ++  QVSFGGF + + A  L  +LE EVG +WRCRLK S TP +SYP 
Sbjct: 1    MEPEGR---EKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPD 57

Query: 1042 FGVTNFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESP 1221
            F VTN    ++TD+YEKVEPHAFVHF  P  VTRA++ AGR EL  NG  LKVS+G E+P
Sbjct: 58   FSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENP 117

Query: 1222 FFINKRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQE 1401
            F +N+R RT +PFK  DVCVEIGTLVS++EF+V W+ PASG DFLVDPFD TCK  FT++
Sbjct: 118  FRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRD 177

Query: 1402 TAFLFKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDI 1581
             AF  K +    +I+C+FK+EFLVREI  +KQ + +            P ++YRTADDDI
Sbjct: 178  IAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDI 237

Query: 1582 HVTVPFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPND 1761
             V VPFD+LDDDDPWIRTTDFTP GAIGRCNS RIS+S R+  KL + + YL +R++  D
Sbjct: 238  LVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVD 297

Query: 1762 IVKKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
             + + + +R+EP+F+    +PFFCI Y+  ISFE
Sbjct: 298  SLSRPITIREEPDFEVPMSDPFFCIHYEEGISFE 331


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  724 bits (1869), Expect(2) = 0.0
 Identities = 344/488 (70%), Positives = 408/488 (83%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P E+N+AAL+H+CSYK PVFD  K LK+VQEWLL+NP  I + +  DD  EVR
Sbjct: 355  FDLLRNQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLRKYKEV+DRFLRVTF DEGMQ +NSNV++ Y+APIVK
Sbjct: 415  RLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVK 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
            ++T N+F QKT ++ R+  I+  GFHLCGR+Y+FLAFS+NQLRD SAWFFAED ++ +  
Sbjct: 475  EITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQG 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I+ WMG+FT+RNVAKC ARMG CFSSTYAT+EVP  ++N++LPDI+RNGYVFSDGIG +T
Sbjct: 535  IKNWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRIT 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ME+AEKL+L  +PP AYQIR  GCKGV+A WP   DGFRLSLRRSMNKF S H  +
Sbjct: 595  PDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTR QPGFLNRQIITLLSALNV D +F  MQ+ MV KL QML + DVAF+++T SC
Sbjct: 655  EICSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GN+AA+MLSAGFKPQTE HL  ML+ ++ AQL  L  K RIFVPSGRWLMGCLDELG
Sbjct: 715  AEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCF+QVSTPSLENCF+KHG  F ++ KN  VIKG VV+AKNPCLHPGDIRILEAV
Sbjct: 775  VLEQGQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAV 834

Query: 3321 DAPGLHHL 3344
            DAPGLHHL
Sbjct: 835  DAPGLHHL 842



 Score =  353 bits (905), Expect(2) = 0.0
 Identities = 174/325 (53%), Positives = 222/325 (68%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            + + +VTQVSFGGFG ++TA  L  +LE E+G+++RCRLK SWTPP+S P F +++  + 
Sbjct: 7    ENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            + TD+Y KVEPHAFVHF SPE+VT  ++  GR +L FN   LK S+G E+ F +NKRRRT
Sbjct: 67   ETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRT 126

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
              PFK +DV +EIG+LV  +EF+V WK P  GVDF+VDPFD TCK  F ++TAF FK  N
Sbjct: 127  KIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLN 186

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +I CDFK EF VREI E K  T              P + YRTADDDI  +V FDLL
Sbjct: 187  KHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLL 246

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVR 1788
            DDDDPWIRTTDFTP GAIGRCN  R+ + PR+G KLK+AM YLK+R++    +KK   ++
Sbjct: 247  DDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQ 306

Query: 1789 DEPEFDYGTPNPFFCIQYKGEISFE 1863
            DEP F     +  F I Y+  ISF+
Sbjct: 307  DEPGFGNPMSDALFSIHYQKNISFD 331


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  719 bits (1855), Expect(2) = 0.0
 Identities = 348/488 (71%), Positives = 406/488 (83%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F L R++PRE+N+AAL+HI SYKRPVFD Y +LK VQEWLL+NP  +   R  DD  EVR
Sbjct: 351  FDLFRNQPREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVR 410

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPT+AYCLPP VELSNRVLRKYKEVSDRFLRVTF DEGMQ +N NVL+YY APIVK
Sbjct: 411  RLVITPTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVK 470

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            ++TSNS SQKT +F RV +++  GF+LCG++Y+FLAFS+NQLRD SAWFFAED  + V+ 
Sbjct: 471  ELTSNSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNG 530

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I++WMG+F +RN+AKC ARMG CFSSTYAT+EVP  E+N+DL +I+RN YVFSDGIGM+T
Sbjct: 531  IKKWMGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMIT 590

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+AEKL+L  NPP AYQIR AGCKGV+A WP K DG RLSLRRSMNKF S H I+
Sbjct: 591  PDLAKEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTIL 650

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQI+TLLS LNV D +F +MQ+ M+ KL+QML +ADVAF ++T SC
Sbjct: 651  EICSWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASC 710

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
             E+GN  A+MLSAGFKPQ+E HL  ML+ +R AQL  L  KARIFVP GRWLMGCLDELG
Sbjct: 711  PEQGNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELG 770

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCFIQVSTPSLENCFSKHG  FSE+  N  VIKG VVIAKNPCLHPGDIRILEAV
Sbjct: 771  VLEQGQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAV 830

Query: 3321 DAPGLHHL 3344
            D PGLHHL
Sbjct: 831  DVPGLHHL 838



 Score =  345 bits (885), Expect(2) = 0.0
 Identities = 170/325 (52%), Positives = 227/325 (69%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +K+ +VTQ+S GGF +++ A  L DFLE EVG+++RCRLK S T  +SYP F   N EN 
Sbjct: 7    EKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
              + +  +VEPHAFVHF SPE+V   L+      L+ N   LKV++G E+ + +N+RRRT
Sbjct: 67   MESIDIRQVEPHAFVHFASPESVNWTLS----NPLMLNNQTLKVTLGPETLYRMNQRRRT 122

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
             +P K +DV VEIG LV ++EF+V W+ P+ GVDFLVDPFD  CK  FT++TAF FKD  
Sbjct: 123  TTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMA 182

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
             + M++CDFK+EFLVR+I EIKQ T+             P ++YRTADDDI V+VPFDLL
Sbjct: 183  KLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLL 242

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVR 1788
            DDDDPWIRTTDFTP GAIGRCNS R+S+ PR+G KLK+AM+YL++R++    ++K L ++
Sbjct: 243  DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQ 302

Query: 1789 DEPEFDYGTPNPFFCIQYKGEISFE 1863
             EP+F     +P F +  K  I FE
Sbjct: 303  SEPDFAVPMSDPIFYVHGKHGIPFE 327


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  682 bits (1760), Expect(2) = 0.0
 Identities = 337/488 (69%), Positives = 393/488 (80%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F+LLR++  E+N+AAL+HI SY+ PV+D Y+ LK V +WLLKNP    S    DD VE+R
Sbjct: 354  FRLLRNQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIR 413

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCL P VELSNRVLRKYK+V+DRFLRVTF DEGMQ +N+NVL+YY A IV+
Sbjct: 414  RLVITPTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVR 473

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            DVTS SFSQKT +F RV +I+  GF+LCGR+Y+FLAFS NQLRD +AWFFAED  + V  
Sbjct: 474  DVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQ 533

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMGKFT+RN+AKC ARMG CFSSTYAT+EVP  ++N  LPDIKRNGY FSDGIG +T
Sbjct: 534  IIGWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKIT 593

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ME+A+KL+L  NPPCAYQIR AGCKGV+A WP + D  RLSLR SM KF S H  +
Sbjct: 594  PDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTL 653

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS L V D VF  MQ+ MV KLD++L + D AFE+V  SC
Sbjct: 654  EICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSC 713

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
             E+G+T A+MLSAGFKPQTE HL  ML+ VR +QL  L  K+RIF+ SGRWLMG LDELG
Sbjct: 714  GEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELG 773

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VLE GQCFIQVS PSL+NCF KHG  F+E+ KNF VIKG VVIAKNPCLHPGDIRILEAV
Sbjct: 774  VLEQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAV 833

Query: 3321 DAPGLHHL 3344
            DAPGLHHL
Sbjct: 834  DAPGLHHL 841



 Score =  381 bits (978), Expect(2) = 0.0
 Identities = 186/324 (57%), Positives = 237/324 (73%)
 Frame = +1

Query: 892  KEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENFQ 1071
            KE +VTQVS GGF +++ A  L  +LE EVG++WRCRLK SWTPP+SYP F +T+    Q
Sbjct: 8    KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQ 67

Query: 1072 RTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRTI 1251
            R DNY+KVEPHAFVHF SP+AVT A++ AGR EL FN   LKVS+G E+P+++N+RRR  
Sbjct: 68   RKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDT 127

Query: 1252 SPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTNN 1431
            +PFK  DV +EIGTL S +EF VGW+ P SGV+FLVDPFD TCK  F+++TAF FK TN 
Sbjct: 128  TPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNE 187

Query: 1432 ITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLLD 1611
              +I+CDFK+EFLVREI E+KQ +              P ++YRTADDD   TVPF LLD
Sbjct: 188  HAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLD 247

Query: 1612 DDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVRD 1791
            DDD WIRTTDFT  GAIGRCN+ R+ + PR+GLKLK+AM YL++R++P + ++ QL +RD
Sbjct: 248  DDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRD 307

Query: 1792 EPEFDYGTPNPFFCIQYKGEISFE 1863
            EP+F     + F+ I YK  I FE
Sbjct: 308  EPDFGRSMSDHFYYI-YKEGIPFE 330


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  700 bits (1806), Expect(2) = 0.0
 Identities = 340/487 (69%), Positives = 403/487 (82%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F+LL+++P+ELN+AAL+H+CSYKRPVFD  K LKIVQEWLL+NP      +  DD VEVR
Sbjct: 357  FELLKNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVR 416

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITP+KAYC+PP VELSNRVLRK++EVSD FLRVTF DEGMQ +N N L+YY+APIVK
Sbjct: 417  RLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVK 476

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDSVRVSDI 2423
            ++TSNSFSQ+T I+ RV TI+ +GF+ CGR+Y+FLAFS+NQLRD SAWFFAED +R  DI
Sbjct: 477  EITSNSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKIRCDDI 536

Query: 2424 RRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLTP 2603
            R WMGKF  RNVAKC ARMG CFSSTYAT+EV   E+N  LPD++RN Y+FSDGIG++T 
Sbjct: 537  RNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITH 596

Query: 2604 ELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIVE 2783
            +L+ E+AEKL+L  N P AYQIR AG KGV+ASWP K DG RLSLR SMNKF S+HNI+E
Sbjct: 597  DLAREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILE 655

Query: 2784 VVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSCA 2963
            + +WTRFQPGFLNRQIITLLSAL V D VF +MQ+ M+ KL+QML +AD+AF+++T SCA
Sbjct: 656  ICAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCA 715

Query: 2964 EEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELGV 3143
            E GN AA+MLS GF P TE HL  ML+S R AQL  L  K+RIFV SGRWLMG LDE GV
Sbjct: 716  EHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGV 775

Query: 3144 LEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAVD 3323
            LE GQCF+QVSTPSLENCFSKHG  FSE+ KN HV+KG V+IAKNPCLHPGD+R+LEAVD
Sbjct: 776  LEQGQCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVIIAKNPCLHPGDVRVLEAVD 834

Query: 3324 APGLHHL 3344
            AP LHHL
Sbjct: 835  APDLHHL 841



 Score =  361 bits (927), Expect(2) = 0.0
 Identities = 175/327 (53%), Positives = 231/327 (70%), Gaps = 2/327 (0%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +K+ +VTQ+S GGFG  + A  L ++LE ++G+++RCRLK SWTPP+SYP F + +  N 
Sbjct: 7    EKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTANI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            +RTDNY+KVEPHAFVHF SPE+VT ALN +G  +L     PLKVS G E+P+F+N+RRRT
Sbjct: 67   RRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRT 126

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
             +PFK SDV VEIGTLVS  EF+V W+ P  GV FLVDPFD  C+  F+++TAF FK   
Sbjct: 127  TTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIE 186

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +I+CDF++ FLVR+I EIK+  +             P ++YRTADDDI  +VPFDLL
Sbjct: 187  KKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLL 246

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDR--QIPNDIVKKQLI 1782
            DDDDPWIRTTDFTP GAIGRCN  RIS+ PR+G KL +AM YLK +  Q+    +K+ L 
Sbjct: 247  DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQTLR 306

Query: 1783 VRDEPEFDYGTPNPFFCIQYKGEISFE 1863
              +EP+F     + FF I ++ +I+F+
Sbjct: 307  TLNEPDFGVPMSDAFFYIHFQKDIAFD 333


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  704 bits (1817), Expect(2) = 0.0
 Identities = 342/487 (70%), Positives = 404/487 (82%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F+LLR++P+ELN+AAL+H+CSYKRPVFD  K LKIVQEWLL+NP      +  DD VEVR
Sbjct: 357  FELLRNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVR 416

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LV+TP+KAYC+PP VELSNRVLRK++EVSD FLRVTF DEGMQ +N N L+YY+APIVK
Sbjct: 417  RLVVTPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVK 476

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDSVRVSDI 2423
            ++TSNSFSQKT I+ RV TI+ +GF+ CGR+Y+FLAFS+NQLRD SAWFFAED +R  DI
Sbjct: 477  EITSNSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKIRCDDI 536

Query: 2424 RRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLTP 2603
            R WMGKF  RNVAKC ARMG CFSSTYAT+EV   E+N  LPD++RN Y+FSDGIG++T 
Sbjct: 537  RNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITH 596

Query: 2604 ELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIVE 2783
            +L+ E+AEKL+L  N P AYQIR AG KGV+ASWP K DG RLSLR SMNKF S+HNI+E
Sbjct: 597  DLAREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILE 655

Query: 2784 VVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSCA 2963
            + +WTRFQPGFLNRQIITLLSAL V D +F +MQ+ M+ KL+QML +AD+AF+++T SCA
Sbjct: 656  ICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCA 715

Query: 2964 EEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELGV 3143
            E GN AA+MLS GF P TE HL  ML+S R AQL  L  K+RIFV SGRWLMG LDELGV
Sbjct: 716  EHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGV 775

Query: 3144 LEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAVD 3323
            LE GQCF+QVSTPSLENCFSKHG  FSE+ KN HV+KG VVIAKNPCLHPGD+R+LEAVD
Sbjct: 776  LEQGQCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVVIAKNPCLHPGDVRVLEAVD 834

Query: 3324 APGLHHL 3344
            AP LHHL
Sbjct: 835  APDLHHL 841



 Score =  352 bits (903), Expect(2) = 0.0
 Identities = 170/327 (51%), Positives = 231/327 (70%), Gaps = 2/327 (0%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +K  +VTQ+S GGFG  + A  L ++LE ++G+++RCRLK SWTPP+SYP F + +    
Sbjct: 7    EKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDTAKI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            +RT++Y+KVEPHAFVHF SPE+VT ALN +G  +L     PLKVS G ++P+F+N+RRRT
Sbjct: 67   RRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRT 126

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
             +PFK SDV VEIGTLVS  EF+V W+ P  GV FLVDPFD  C+  F+++TAF FK  +
Sbjct: 127  TTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGID 186

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +I+CDF++ FLVR+I EI++  +             P ++YRTADDDI  +VPFDLL
Sbjct: 187  KKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLL 246

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDR--QIPNDIVKKQLI 1782
            DDDDPWIRTTDFTP GAIGRCN  RIS+ PR+G KL +AM YLK +  QI    +K+ L 
Sbjct: 247  DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLR 306

Query: 1783 VRDEPEFDYGTPNPFFCIQYKGEISFE 1863
             ++EP+F     + FF + ++ +I+F+
Sbjct: 307  TQNEPDFGMPMSDAFFYVHFQKDIAFD 333


>ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
            gi|561010117|gb|ESW09024.1| hypothetical protein
            PHAVU_009G093700g [Phaseolus vulgaris]
          Length = 1204

 Score =  692 bits (1787), Expect(2) = 0.0
 Identities = 336/487 (68%), Positives = 402/487 (82%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F+LLR++P+ELN+AAL+H+CSYKRPVFD  K LK+VQEWLL+NP      +  DD VEVR
Sbjct: 357  FELLRNQPKELNVAALKHLCSYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVR 416

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITP+KAYC+PP VELSNRVLRK++EVSD FLRVTF DEGMQ +N N L+YY+APIVK
Sbjct: 417  RLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVK 476

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDSVRVSDI 2423
            ++TSN+FSQKT I+ RV TI+ +GF+ CGR+Y+FLAFS+NQLRD SAWFFAE+ ++  +I
Sbjct: 477  EITSNTFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEEKMKCDEI 536

Query: 2424 RRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLTP 2603
            R WMGKF  +NVAKC ARMG CFSSTYAT+EV   E+N  LPD++RN YVFSDGIG++TP
Sbjct: 537  RSWMGKFNQKNVAKCAARMGQCFSSTYATVEVVANEVNSMLPDVERNNYVFSDGIGIITP 596

Query: 2604 ELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIVE 2783
            +L+ E+AEKL+L  N P AYQIR AG KGV+ASWP K DG RLSLR SMNKF S+H I+E
Sbjct: 597  DLAREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGIRLSLRPSMNKFQSTHTILE 655

Query: 2784 VVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSCA 2963
            + +WTRFQPGFLNRQIITLLSAL V D +F +MQ+ M+ KL+QML +AD+AF+++T SCA
Sbjct: 656  ICAWTRFQPGFLNRQIITLLSALGVPDEIFWKMQEAMLWKLNQMLVDADIAFDVLTKSCA 715

Query: 2964 EEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELGV 3143
            E GN AA+MLS GF P TE HL  ML+S R AQL  L  K+RIFV SGRWLMG LDE GV
Sbjct: 716  EHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGV 775

Query: 3144 LEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAVD 3323
            LE GQCF+QVSTPSLENCFSKHG  FSE+ KN  V+KG VVIAKNPCLHPGD+R+LEAVD
Sbjct: 776  LEQGQCFVQVSTPSLENCFSKHGSRFSET-KNLQVVKGFVVIAKNPCLHPGDVRVLEAVD 834

Query: 3324 APGLHHL 3344
            AP LHHL
Sbjct: 835  APDLHHL 841



 Score =  360 bits (924), Expect(2) = 0.0
 Identities = 176/327 (53%), Positives = 229/327 (70%), Gaps = 2/327 (0%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +K+ +VTQ+S GGFG  + A  L ++LE ++G+++RCRLK SWTPP+SYP F +T+    
Sbjct: 7    EKDSVVTQISIGGFGSEVKASELVNYLEDKIGLVYRCRLKTSWTPPESYPEFNITDTAKI 66

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            + TD+Y+KVEPHAFVHF SPE+VT ALN +GR +L     PLKVS G E+P+F+NKRRRT
Sbjct: 67   KGTDDYKKVEPHAFVHFASPESVTAALNASGRCDLFLKNEPLKVSCGPENPYFLNKRRRT 126

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
              PFK SDV VEIGTLVS  EF+V WK P  GV FLVDPFD  C+  FT++ AF FK   
Sbjct: 127  TIPFKMSDVIVEIGTLVSPGEFFVAWKGPDKGVKFLVDPFDGMCRFCFTRDIAFPFKGIE 186

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +I+CDF++ FLVR+I EI++  +             P ++YRTA+DDI   VPFDLL
Sbjct: 187  KEAVIKCDFQVGFLVRDINEIRRYNDSSYLVVLLHLASSPWVWYRTAEDDIEDLVPFDLL 246

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVR 1788
            DDDDPWIRTTDFTP GAIGRCN  +IS+ PR+G KL +AM YLK +++    +  +  +R
Sbjct: 247  DDDDPWIRTTDFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQMQELPLKQTLR 306

Query: 1789 DEPEFDYGTP--NPFFCIQYKGEISFE 1863
               E D+GTP  NPFF I Y+  I+F+
Sbjct: 307  ALNEPDFGTPMSNPFFYIDYQVGITFD 333


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  677 bits (1748), Expect(2) = 0.0
 Identities = 325/488 (66%), Positives = 399/488 (81%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P E+N+AAL HI +++RPV D  K+LK+VQEWLLKNP  +   +   D VE+R
Sbjct: 354  FDLLRNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIR 413

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITP+KAYC PP VELSNRVLR+YK+V+DRFLRVTF DEGM+K+NS+V +YY+APIVK
Sbjct: 414  RLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVK 473

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAE-DSVRVSD 2420
            ++TS+SF QKT IF R+  I++ GFHLCGR+Y+FLA+S+NQLRD SAWFFAE  S+ V  
Sbjct: 474  EITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDA 533

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMGKFT++NVAKC AR+G CFSSTYATIEVP   +N+DL D++RNGYVFSDGIG +T
Sbjct: 534  ILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTIT 593

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+A+KL++  +PPCAYQIR AG KGV+A+WP K DG RL+LR SMNKF S+H I+
Sbjct: 594  PDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRIL 653

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS L+V D +F  MQ+ M+ KLD+M+ + DVAFE++T SC
Sbjct: 654  EICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASC 713

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GN AA+MLSAGF+P+TE HL  ML  +R AQL  L  KARIFV  GRW MGC DE G
Sbjct: 714  AEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESG 773

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VL+ GQCFIQVSTP LE CFSKHG  F+E+  N  V++GTVVIAKNPCLHPGD+RILEAV
Sbjct: 774  VLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAV 833

Query: 3321 DAPGLHHL 3344
            DAP LHHL
Sbjct: 834  DAPELHHL 841



 Score =  371 bits (952), Expect(2) = 0.0
 Identities = 177/327 (54%), Positives = 234/327 (71%)
 Frame = +1

Query: 883  KDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFE 1062
            ++ ++++VTQVSFGGF   + A  L  +LE E+G++ RCRLK SWTPP+SYP F V+N  
Sbjct: 4    EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 1063 NFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRR 1242
            N  ++D+Y+KV PHAFVHF SP++   AL+ AGRGELIFN   LK S+G ESPF IN+RR
Sbjct: 64   NVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRR 123

Query: 1243 RTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKD 1422
            RT  PFK SDV V+IG L   + F V W+ P+SG+DFLVDPFD TCK  FT++TAF FKD
Sbjct: 124  RTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKD 183

Query: 1423 TNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFD 1602
             N  T ++CD+K+EF+VR+I +I + T+             PC++YRTADDDI   VP+D
Sbjct: 184  NNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKLVPYD 243

Query: 1603 LLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLI 1782
            LLDDDDPWIRTTDFT  GAIGRCN+ R+S+ PRYG+KL  AM YLK++++    + +   
Sbjct: 244  LLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPK 303

Query: 1783 VRDEPEFDYGTPNPFFCIQYKGEISFE 1863
            + +EP++     + FFCI YK +ISFE
Sbjct: 304  ILNEPDYGVQMTDHFFCILYKKDISFE 330


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  677 bits (1748), Expect(2) = 0.0
 Identities = 325/488 (66%), Positives = 399/488 (81%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P E+N+AAL HI +++RPV D  K+LK+VQEWLLKNP  +   +   D VE+R
Sbjct: 354  FDLLRNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIR 413

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITP+KAYC PP VELSNRVLR+YK+V+DRFLRVTF DEGM+K+NS+V +YY+APIVK
Sbjct: 414  RLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVK 473

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAE-DSVRVSD 2420
            ++TS+SF QKT IF R+  I++ GFHLCGR+Y+FLA+S+NQLRD SAWFFAE  S+ V  
Sbjct: 474  EITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDA 533

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMGKFT++NVAKC AR+G CFSSTYATIEVP   +N+DL D++RNGYVFSDGIG +T
Sbjct: 534  ILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTIT 593

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
            P+L+ E+A+KL++  +PPCAYQIR AG KGV+A+WP K DG RL+LR SMNKF S+H I+
Sbjct: 594  PDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRIL 653

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQIITLLS L+V D +F  MQ+ M+ KLD+M+ + DVAFE++T SC
Sbjct: 654  EICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASC 713

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE+GN AA+MLSAGF+P+TE HL  ML  +R AQL  L  KARIFV  GRW MGC DE G
Sbjct: 714  AEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESG 773

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
            VL+ GQCFIQVSTP LE CFSKHG  F+E+  N  V++GTVVIAKNPCLHPGD+RILEAV
Sbjct: 774  VLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAV 833

Query: 3321 DAPGLHHL 3344
            DAP LHHL
Sbjct: 834  DAPELHHL 841



 Score =  371 bits (952), Expect(2) = 0.0
 Identities = 177/327 (54%), Positives = 234/327 (71%)
 Frame = +1

Query: 883  KDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFE 1062
            ++ ++++VTQVSFGGF   + A  L  +LE E+G++ RCRLK SWTPP+SYP F V+N  
Sbjct: 4    EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 1063 NFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRR 1242
            N  ++D+Y+KV PHAFVHF SP++   AL+ AGRGELIFN   LK S+G ESPF IN+RR
Sbjct: 64   NVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRR 123

Query: 1243 RTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKD 1422
            RT  PFK SDV V+IG L   + F V W+ P+SG+DFLVDPFD TCK  FT++TAF FKD
Sbjct: 124  RTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKD 183

Query: 1423 TNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFD 1602
             N  T ++CD+K+EF+VR+I +I + T+             PC++YRTADDDI   VP+D
Sbjct: 184  NNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLVPYD 243

Query: 1603 LLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLI 1782
            LLDDDDPWIRTTDFT  GAIGRCN+ R+S+ PRYG+KL  AM YLK++++    + +   
Sbjct: 244  LLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPK 303

Query: 1783 VRDEPEFDYGTPNPFFCIQYKGEISFE 1863
            + +EP++     + FFCI YK +ISFE
Sbjct: 304  ILNEPDYGVQMTDHFFCILYKKDISFE 330


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
            gi|482559225|gb|EOA23416.1| hypothetical protein
            CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score =  696 bits (1796), Expect(2) = 0.0
 Identities = 332/489 (67%), Positives = 406/489 (83%), Gaps = 2/489 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P+++N+A+L+H+C+YKRPVFD YK LK+V EW+LKNP  +GS   ++D  E+R
Sbjct: 353  FDLLRNQPKDVNVASLKHLCTYKRPVFDAYKRLKLVHEWILKNPKLLGSHEKSEDISEIR 412

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPT+AYCLPP VEL NRVLRKYK V++RFLRVTF DE MQ +NSNVLSY++APIVK
Sbjct: 413  RLVITPTRAYCLPPEVELPNRVLRKYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVK 472

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            D+TS+SFSQKT IF RV  I+  GF LCGR+Y+FLAFS NQLRD SAWFFAED   RVSD
Sbjct: 473  DLTSSSFSQKTYIFKRVKNILTDGFMLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSD 532

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I+ WMGKF D+NVAKC ARMGLCFSSTYAT++V   E++ +LP+I+RNGYVFSDGIG++T
Sbjct: 533  IKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMLHEVDTELPEIERNGYVFSDGIGIIT 592

Query: 2601 PELSMEIAEKLQLTAN-PPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNI 2777
            P+L+ E+ EKL+L  +  PCAYQIR AG KGV+A WP K DG RL+LR SM KF S+H I
Sbjct: 593  PDLADEVMEKLRLDVHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSNHTI 652

Query: 2778 VEVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLS 2957
            +E+ SWTRFQPGFLNRQIITLLS L V D +F  MQ+ M+CKL+++L++ DVAFE++T S
Sbjct: 653  LEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWAMQESMLCKLNRILDDTDVAFEVLTAS 712

Query: 2958 CAEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDEL 3137
            CAE+GNTAA+MLSAGFKP+TE HL  MLSSVR+AQL DL  K+RIFV SGRWLMGCLDE 
Sbjct: 713  CAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWDLREKSRIFVTSGRWLMGCLDEA 772

Query: 3138 GVLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEA 3317
            G+LE G+CFIQVS PS++NCFSKHG  F E+  +  V+KG V +AKNPCLHPGD+RILEA
Sbjct: 773  GILEEGKCFIQVSKPSIKNCFSKHGSRFKETKTDLQVVKGYVAVAKNPCLHPGDVRILEA 832

Query: 3318 VDAPGLHHL 3344
            VD P LHH+
Sbjct: 833  VDVPQLHHM 841



 Score =  351 bits (900), Expect(2) = 0.0
 Identities = 174/321 (54%), Positives = 226/321 (70%)
 Frame = +1

Query: 901  IVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENFQRTD 1080
            +VTQVS GGFG+  TA  L+D+LE EVG++WRCRLKNSWTPP SYP F + +  N  R D
Sbjct: 11   VVTQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEIADTSNIPRID 70

Query: 1081 NYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRTISPF 1260
            +Y+KVEPHAFVHF   E+   A++ AG+ +LI +G PLKVS+G ++P+ +N+RRRT +P+
Sbjct: 71   DYKKVEPHAFVHFALSESTNHAMDAAGQCKLILDGQPLKVSLGPKNPYTLNQRRRTTTPY 130

Query: 1261 KFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTNNITM 1440
            K + V +EIGTLVS++EF V W+A   GV+FLVDPFD TCK  F++ TAF FKD     +
Sbjct: 131  KMTGVSLEIGTLVSRDEFLVSWRA--DGVNFLVDPFDNTCKFCFSKSTAFAFKDAVMHAV 188

Query: 1441 IRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLLDDDD 1620
            I+CD+KLE LVR+I   +Q  N             P ++YRTADDDI+ TVPFDLLDDDD
Sbjct: 189  IKCDYKLESLVRDIQTFRQYRNSHGFVLLLQLASSPRVWYRTADDDIYETVPFDLLDDDD 248

Query: 1621 PWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKKQLIVRDEPE 1800
            PWIRTTDFT  GAIGRC S R+ +SPRY  KL  A+ YL+ R++  + V+    +RDEP 
Sbjct: 249  PWIRTTDFTQVGAIGRCLSYRVLISPRYDKKLTTALDYLRMRRVQEERVRWPPRIRDEPC 308

Query: 1801 FDYGTPNPFFCIQYKGEISFE 1863
            F     + FFCI ++  ISFE
Sbjct: 309  FGEPVSDHFFCIHHREGISFE 329


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  695 bits (1794), Expect(2) = 0.0
 Identities = 339/488 (69%), Positives = 400/488 (81%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLRS   E+N AAL+H+ SYK PV D  ++L  +Q+WLLKNP  +      DD VEVR
Sbjct: 355  FYLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLR YK V+DRFLRVTF DEGM+ LN NVL+YY A IV+
Sbjct: 415  RLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
            ++TSNS  Q+T+IF RV +I+ KGFHLCGR+Y+FLAFS NQLRD SAWFFAED  +RV  
Sbjct: 475  EITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPG 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMG+F++RNVAKC ARMG CFSSTYAT+EVP  E+N +LPDI+RNGYVFSDGIGM++
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
             +L++E+AEKL L+ NPP AYQIR AGCKGV+A WP K+DG RLSLR SM KF S+H I+
Sbjct: 595  ADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQI+TLLS+L+V DG+F  MQ  M+  LD+ML ++DVAF+++T SC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE GNTAA+MLSAGFKPQ+E HL  MLSS+R +QL DL  KARIFVPSGRWLMGCLDELG
Sbjct: 715  AEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
             LE GQCFIQVS+PSLENCF KHGP+FS+  KN  V+KG VVIAKNPCLHPGD+RILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 3321 DAPGLHHL 3344
            D P L HL
Sbjct: 835  DVPSLSHL 842



 Score =  351 bits (900), Expect(2) = 0.0
 Identities = 177/326 (54%), Positives = 229/326 (70%), Gaps = 2/326 (0%)
 Frame = +1

Query: 889  KKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVTNFENF 1068
            +KE++VTQ+S GGF   + A +LS++LE++VG +WRCRLK S TPPDSYP + + + E  
Sbjct: 7    EKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI-DAEKV 65

Query: 1069 QRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFINKRRRT 1248
            QR +NYEKV PHAFVHF S E+   AL  AG  ELI    PL VS+G E+P+ +N+RRRT
Sbjct: 66   QRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRT 125

Query: 1249 ISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFLFKDTN 1428
              PFKFSDV VE+G LVS+++F VGW+ P +GVDFLVDPF+ TCK+ FT++TAF F+   
Sbjct: 126  TMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEA 185

Query: 1429 NITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTVPFDLL 1608
               +I+C+FK+EFLVREI EIK+  ++            P +FYRTADDDI  +V FDLL
Sbjct: 186  RHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLL 245

Query: 1609 DDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIP--NDIVKKQLI 1782
            DDDD WIRTTD T  GAIGRCN+ RIS+ PR G   ++AMAY   R++P      +K L 
Sbjct: 246  DDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLR 305

Query: 1783 VRDEPEFDYGTPNPFFCIQYKGEISF 1860
            V+DEP+F     +PFFC Q +G ISF
Sbjct: 306  VKDEPDFGVSMSDPFFCFQNEG-ISF 330


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  694 bits (1791), Expect(2) = 0.0
 Identities = 335/489 (68%), Positives = 404/489 (82%), Gaps = 2/489 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLR++P+++NIA+L+H+C+YKRPVFD YK LK+VQEW+LKNP  +G    ++D  E+R
Sbjct: 353  FDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIR 412

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPT+AYCLPP VELSNRVLRKY+ V++RFLRVTF DE MQ +NSNVLSY++APIVK
Sbjct: 413  RLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVK 472

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAEDS-VRVSD 2420
            D+TS+SFSQKT +F RV +I+  GF LCGR+Y+FLAFS NQLRD SAWFFAED   RVSD
Sbjct: 473  DLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSD 532

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I+ WMGKF D+NVAKC ARMGLCFSSTYAT++V   E+N +LPDI+RNGYVFSDGIG +T
Sbjct: 533  IKAWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTIT 592

Query: 2601 PELSMEIAEKLQLTAN-PPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNI 2777
            P+L+ E+ EKL+L  +  PCAYQIR AG KGV+A WP K DG RL+LR SM KF S H I
Sbjct: 593  PDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHTI 652

Query: 2778 VEVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLS 2957
            +E+ SWTRFQPGFLNRQIITLLS L V D +F  MQ+ M+ KL+++L++ DVAFE++T S
Sbjct: 653  LEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTAS 712

Query: 2958 CAEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDEL 3137
            CAE+GNTAA+MLSAGFKP+TE HL  MLSSVR+AQL  L  K+RIFV SGRWLMGCLDE 
Sbjct: 713  CAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEA 772

Query: 3138 GVLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEA 3317
            G LE+GQCFIQVS PS+ENCFSKHG  F E+  +  V+KG V IAKNPCLHPGD+RILEA
Sbjct: 773  GKLEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEA 832

Query: 3318 VDAPGLHHL 3344
            VD P LHH+
Sbjct: 833  VDVPQLHHM 841



 Score =  352 bits (903), Expect(2) = 0.0
 Identities = 173/330 (52%), Positives = 228/330 (69%)
 Frame = +1

Query: 874  GNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVT 1053
            G+    K  +VTQVS GGFG+  TA  L+D+LE E+G++WRCRLK SWTPP SYP F + 
Sbjct: 2    GSEGSMKNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIA 61

Query: 1054 NFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFIN 1233
            +  +  + D+Y+KVEPHAFVHF  PE+  RA++ AG+  LI +G PLKVS+G ++P+ +N
Sbjct: 62   DTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLN 121

Query: 1234 KRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFL 1413
            +RRRT +P+K + + +EIGTLVS++EF V W+A   GVDFLVDPFD TCK  F + TAF 
Sbjct: 122  QRRRTTTPYKLAGISLEIGTLVSRDEFLVSWRA--DGVDFLVDPFDNTCKFCFRKSTAFS 179

Query: 1414 FKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTV 1593
            FKD     +I CD+KLE LVR+I  ++Q  N             P ++YRTADDDIH T+
Sbjct: 180  FKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDTI 239

Query: 1594 PFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIPNDIVKK 1773
            P DLLDDDDPWIRTTDFT  GAIGRC+S R+ +SPRY  KL  A+ YL+ R++  + V+ 
Sbjct: 240  PVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRW 299

Query: 1774 QLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
               +R+EP F     + FFCI +K  ISFE
Sbjct: 300  PPRIRNEPCFGEPVSDHFFCIHHKEGISFE 329


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  699 bits (1803), Expect(2) = 0.0
 Identities = 339/488 (69%), Positives = 403/488 (82%), Gaps = 1/488 (0%)
 Frame = +3

Query: 1884 FQLLRSKPRELNIAALRHICSYKRPVFDCYKELKIVQEWLLKNPDSIGSIRSTDDNVEVR 2063
            F LLRS   E+N+AAL+H+ SYK PV D  ++L  +++WLLKNP  +      DD VEVR
Sbjct: 355  FYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVR 414

Query: 2064 KLVITPTKAYCLPPVVELSNRVLRKYKEVSDRFLRVTFADEGMQKLNSNVLSYYIAPIVK 2243
            +LVITPTKAYCLPP VELSNRVLR YK V+DRFLRVTF DEGM+ LN NVL+YY A IV+
Sbjct: 415  RLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVR 474

Query: 2244 DVTSNSFSQKTSIFNRVNTIMRKGFHLCGRQYTFLAFSTNQLRDHSAWFFAED-SVRVSD 2420
            ++TSNS  Q+T+IF RV +I+ +GFHLCGR+Y+FLAFS NQLRD SAWFFAED  +RV  
Sbjct: 475  EITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPG 534

Query: 2421 IRRWMGKFTDRNVAKCTARMGLCFSSTYATIEVPFEEINYDLPDIKRNGYVFSDGIGMLT 2600
            I  WMG+F++RNVAKC ARMG CFSSTYAT+EVP  E+N +LPDI+RNGYVFSDGIGM++
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2601 PELSMEIAEKLQLTANPPCAYQIRIAGCKGVIASWPGKDDGFRLSLRRSMNKFISSHNIV 2780
             +L++E+AEKL L+ NPP AYQIR AGCKGV+A WP K+DG RLSLR SM KF S+H I+
Sbjct: 595  ADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2781 EVVSWTRFQPGFLNRQIITLLSALNVSDGVFSRMQDLMVCKLDQMLENADVAFEIVTLSC 2960
            E+ SWTRFQPGFLNRQI+TLLS+L+V DG+F  MQ  M+  LD+ML ++DVAF+++T SC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 2961 AEEGNTAAMMLSAGFKPQTELHLGRMLSSVRVAQLSDLLAKARIFVPSGRWLMGCLDELG 3140
            AE GNTAA+MLSAGFKPQ+E HL  MLSS+R +QL DL  KARIFVPSGRWLMGCLDELG
Sbjct: 715  AEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 3141 VLEYGQCFIQVSTPSLENCFSKHGPEFSESMKNFHVIKGTVVIAKNPCLHPGDIRILEAV 3320
             LE GQCFIQVS+PSLENCF KHGP+FS+  KN  V+KG VVIAKNPCLHPGD+RILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 3321 DAPGLHHL 3344
            D PGLHHL
Sbjct: 835  DVPGLHHL 842



 Score =  347 bits (890), Expect(2) = 0.0
 Identities = 176/332 (53%), Positives = 229/332 (68%), Gaps = 2/332 (0%)
 Frame = +1

Query: 874  GNGKDKKEMIVTQVSFGGFGKYITADVLSDFLEKEVGVIWRCRLKNSWTPPDSYPIFGVT 1053
            G+   +K+++VTQ+S GGF   + A +LS++LE++VG +WRCRLK S TPPDSYP F V 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV- 60

Query: 1054 NFENFQRTDNYEKVEPHAFVHFTSPEAVTRALNVAGRGELIFNGSPLKVSVGLESPFFIN 1233
            + E  QR  +YEKV PHAFVHF S E+   AL  AG  ELI    PL VS+G E+P+ +N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 1234 KRRRTISPFKFSDVCVEIGTLVSQNEFWVGWKAPASGVDFLVDPFDETCKVTFTQETAFL 1413
            +RRRT  PFKFSDV +E+G LVS+++F VGW+ P +GVDFLVDPF+  CK+ FT++TAF 
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 1414 FKDTNNITMIRCDFKLEFLVREITEIKQSTNWXXXXXXXXXXXXPCLFYRTADDDIHVTV 1593
            F+      +I+C+FK+EFLVREI EIK+  ++            P +FYRTADDDI  +V
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1594 PFDLLDDDDPWIRTTDFTPHGAIGRCNSCRISMSPRYGLKLKQAMAYLKDRQIP--NDIV 1767
             FDLLDDDD WIRTTD T  GAIGRCN+ RIS+ PR G   ++AMAY    ++P      
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1768 KKQLIVRDEPEFDYGTPNPFFCIQYKGEISFE 1863
            +K L VRDEP+F     +PFFC Q +G ISF+
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQNEG-ISFK 331