BLASTX nr result
ID: Cocculus23_contig00005784
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cocculus23_contig00005784 (1042 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284465.1| PREDICTED: general transcription factor IIH ... 337 6e-90 ref|XP_002307429.2| basal transcription factor complex subunit-r... 330 6e-88 ref|XP_007019036.1| Basal transcription factor complex subunit-r... 328 2e-87 ref|XP_006472762.1| PREDICTED: general transcription factor IIH ... 319 1e-84 ref|XP_004152842.1| PREDICTED: general transcription factor IIH ... 318 2e-84 ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prun... 315 3e-83 gb|EYU17663.1| hypothetical protein MIMGU_mgv1a011002mg [Mimulus... 312 2e-82 ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps... 311 3e-82 ref|XP_004290858.1| PREDICTED: general transcription factor IIH ... 310 8e-82 ref|XP_004290857.1| PREDICTED: general transcription factor IIH ... 310 8e-82 ref|NP_564050.1| basal transcription factor complex subunit-rela... 306 1e-80 ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab... 305 2e-80 ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr... 304 3e-80 ref|XP_006472763.1| PREDICTED: general transcription factor IIH ... 303 1e-79 ref|XP_006347459.1| PREDICTED: general transcription factor IIH ... 303 1e-79 ref|XP_004241513.1| PREDICTED: general transcription factor IIH ... 303 1e-79 ref|XP_004500559.1| PREDICTED: general transcription factor IIH ... 296 9e-78 ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phas... 295 3e-77 ref|XP_003523449.1| PREDICTED: general transcription factor IIH ... 291 2e-76 ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g... 291 4e-76 >ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis vinifera] gi|302141830|emb|CBI19033.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 337 bits (863), Expect = 6e-90 Identities = 178/266 (66%), Positives = 187/266 (70%), Gaps = 2/266 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS+FL+H IATG N Sbjct: 23 NPFFWSTAS-----LPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVP 77 Query: 754 IEGS-ENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVF 581 + EN R+P L S +LQKLEEFV DE+L K CYIQRVF Sbjct: 78 ANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVF 137 Query: 580 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 401 R+G LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI Sbjct: 138 RTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 197 Query: 400 TGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICS 221 TGGVYLKPQ LDGLFQYLST+FATDLHSRRFLQLPKP GVDFRASCFCHK TIDMGYICS Sbjct: 198 TGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICS 257 Query: 220 VCLSIFCKHHKKCSTCGSVFGQANPE 143 VCLSIFCKHHKKCSTCGSVFGQA + Sbjct: 258 VCLSIFCKHHKKCSTCGSVFGQAQSD 283 >ref|XP_002307429.2| basal transcription factor complex subunit-related family protein [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal transcription factor complex subunit-related family protein [Populus trichocarpa] Length = 298 Score = 330 bits (846), Expect = 6e-88 Identities = 172/266 (64%), Positives = 192/266 (72%), Gaps = 2/266 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW +LSFS+FL+H IA+G N Sbjct: 23 NPFFW----TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDA 78 Query: 754 IE-GSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVF 581 + GSE+ R+P+LYS +LQKLEEF+I DE+L K + LCYIQRVF Sbjct: 79 SQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVF 138 Query: 580 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 401 RSG LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC +GA +SAFLQQASYI Sbjct: 139 RSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYI 198 Query: 400 TGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICS 221 TGGVY+KPQ LDGLFQYL+T+FATDLHSR F+QLP+P GVDFRASCFCHK TIDMGYICS Sbjct: 199 TGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICS 258 Query: 220 VCLSIFCKHHKKCSTCGSVFGQANPE 143 VCLSIFC HHKKCSTCGSVFGQA + Sbjct: 259 VCLSIFCNHHKKCSTCGSVFGQAQSD 284 >ref|XP_007019036.1| Basal transcription factor complex subunit-related isoform 1 [Theobroma cacao] gi|508724364|gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1 [Theobroma cacao] Length = 296 Score = 328 bits (841), Expect = 2e-87 Identities = 173/265 (65%), Positives = 185/265 (69%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW LSFS+FL+H IATG N Sbjct: 23 NPFFWSASS-----LSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYIFDSSSDL 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFR 578 + EN R+P + S +LQKLEEF+I DE+L K LCYIQRVFR Sbjct: 78 NQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHP PRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYIT Sbjct: 138 SGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGV+ KPQ LDGLFQYL TIFATDLHSR FL LPKPVGVDFRASCFCHK TIDMGYICSV Sbjct: 198 GGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRASCFCHKNTIDMGYICSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGSVFGQA E Sbjct: 258 CLSIFCKHHKKCSTCGSVFGQAQSE 282 >ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1 [Citrus sinensis] Length = 298 Score = 319 bits (817), Expect = 1e-84 Identities = 168/265 (63%), Positives = 183/265 (69%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW LSFS+FL H IATG N + Sbjct: 23 NPFFWSSSS-----LSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFR 578 + N R+P+L + +LQ LEEF+ DE+L K CYIQRVFR Sbjct: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SGLLHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYIT Sbjct: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGV+ KPQ LDGLFQYL TIF TDLHSR FLQLPKPVGVDFRASCFCHK TIDMGYICSV Sbjct: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSI+CKH KKCSTCGSVFGQA + Sbjct: 258 CLSIYCKHLKKCSTCGSVFGQAQTQ 282 >ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis sativus] Length = 295 Score = 318 bits (816), Expect = 2e-84 Identities = 165/265 (62%), Positives = 184/265 (69%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS+FL+H I TG Sbjct: 23 NPFFWSTSA-----LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYS 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDER-LEKSNXXXXXXXXXXXXXXXXLCYIQRVFR 578 G E+ R+P L +R+L+ LEEFVI DE+ +++ LCYIQ+VFR Sbjct: 78 NHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC IG+ +SAFLQQASYIT Sbjct: 138 SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ +DGLFQYLST+F TDLHSR FLQLPK VGVDFRASCFCHKKTIDMGY+CSV Sbjct: 198 GGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGSVFG+ E Sbjct: 258 CLSIFCKHHKKCSTCGSVFGETPVE 282 >ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica] gi|462420187|gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica] Length = 295 Score = 315 bits (806), Expect = 3e-83 Identities = 169/265 (63%), Positives = 183/265 (69%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS FL+H IATG N S Sbjct: 23 NPFFWSSSS-----LPFSVFLSHVLTFLNSILLLNQLNQVVVIATGYNSCSYIYDSSTST 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFR 578 +GS+N R+P +LQKLEEFVI DE+L K CYIQRVFR Sbjct: 78 NQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALCYIQRVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHPQPRILCLQGS DGPEQYVA+MNAIFSAQRS VPIDSC +G+ +SAFLQQASYIT Sbjct: 138 SGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFLQQASYIT 196 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ +GLFQYLST+FATDLHSR FLQLPK +GVDFRASCFCHKKTIDMGYICSV Sbjct: 197 GGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICSV 256 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGSVFGQA + Sbjct: 257 CLSIFCKHHKKCSTCGSVFGQAQSD 281 >gb|EYU17663.1| hypothetical protein MIMGU_mgv1a011002mg [Mimulus guttatus] Length = 295 Score = 312 bits (799), Expect = 2e-82 Identities = 167/265 (63%), Positives = 181/265 (68%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS+F++H +ATG N Sbjct: 23 NPFFWNSVKSN---LPFSKFISHVLAFLNSILLVNQQNQVVVLATGHNSCDYVFDS---S 76 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXLCYIQRVFR 578 + S+N+R L LQKLEEFV DE L + + LCYIQRVFR Sbjct: 77 VAQSQNQRAEHL----LQKLEEFVDKDESLCREESVDGQGFSLLSGSLSMALCYIQRVFR 132 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHP PRILCL GSPDGP QYVA+MN+IFSAQRSMVPID+CVIG QHSAFLQQASYIT Sbjct: 133 SGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDACVIGTQHSAFLQQASYIT 192 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQLLDGLFQYLST+FATDLHSR FLQLPKP GVDFRASCFCHK TIDMGYICSV Sbjct: 193 GGVYLKPQLLDGLFQYLSTVFATDLHSRAFLQLPKPAGVDFRASCFCHKNTIDMGYICSV 252 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKH KKCSTCGSVFGQA + Sbjct: 253 CLSIFCKHQKKCSTCGSVFGQAQAQ 277 >ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella] gi|482574167|gb|EOA38354.1| hypothetical protein CARUB_v10009867mg [Capsella rubella] Length = 301 Score = 311 bits (797), Expect = 3e-82 Identities = 165/266 (62%), Positives = 187/266 (70%), Gaps = 5/266 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW ++FS+FL+H IATG + + Sbjct: 23 NPFFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYIYDSSLTS 77 Query: 754 IEGS-ENER--LPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQ 590 GS E +R +P L++ +L KLE+FV DE L E+ N LCYIQ Sbjct: 78 NHGSFERDRTGMPPLFASLLNKLEDFVTKDEELSREEGNEDRTPSCLLSGSLSMALCYIQ 137 Query: 589 RVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQA 410 RVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQA Sbjct: 138 RVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQA 197 Query: 409 SYITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGY 230 SYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKP+GVDFRASCFCHKKTIDMGY Sbjct: 198 SYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGY 257 Query: 229 ICSVCLSIFCKHHKKCSTCGSVFGQA 152 ICSVCLSIFC+HHKKCSTCGSVFGQ+ Sbjct: 258 ICSVCLSIFCEHHKKCSTCGSVFGQS 283 >ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 2 [Fragaria vesca subsp. vesca] Length = 298 Score = 310 bits (793), Expect = 8e-82 Identities = 163/265 (61%), Positives = 182/265 (68%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS++L+H IATG + + Sbjct: 23 NPFFWSSSS-----LPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASAP 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFR 578 +GS+ R+P L S +L+KLEEFV DE+L K + LCYIQ+VFR Sbjct: 78 GQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG HP PRILCLQGS DGPEQYVA+MNAIFSAQRSMVPIDSC +G+ +SAFLQQASYIT Sbjct: 138 SGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ DGL QYL+T+FATDLHSR FLQLPK GVDFRASCFCHKKTID GYICSV Sbjct: 198 GGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTIDTGYICSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGSVFGQA E Sbjct: 258 CLSIFCKHHKKCSTCGSVFGQAQSE 282 >ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 1 [Fragaria vesca subsp. vesca] Length = 300 Score = 310 bits (793), Expect = 8e-82 Identities = 163/265 (61%), Positives = 182/265 (68%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW L FS++L+H IATG + + Sbjct: 23 NPFFWSSSS-----LPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASAP 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFR 578 +GS+ R+P L S +L+KLEEFV DE+L K + LCYIQ+VFR Sbjct: 78 GQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG HP PRILCLQGS DGPEQYVA+MNAIFSAQRSMVPIDSC +G+ +SAFLQQASYIT Sbjct: 138 SGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ DGL QYL+T+FATDLHSR FLQLPK GVDFRASCFCHKKTID GYICSV Sbjct: 198 GGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTIDTGYICSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGSVFGQA E Sbjct: 258 CLSIFCKHHKKCSTCGSVFGQAQSE 282 >ref|NP_564050.1| basal transcription factor complex subunit-related protein [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1| basal transcription factor complex subunit-related protein [Arabidopsis thaliana] Length = 301 Score = 306 bits (783), Expect = 1e-80 Identities = 161/266 (60%), Positives = 182/266 (68%), Gaps = 5/266 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NP FW ++FS+FL+H IATG + + Sbjct: 23 NPLFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTS 77 Query: 754 IEG---SENERLPTLYSRVLQKLEEFVISDERLEKS--NXXXXXXXXXXXXXXXXLCYIQ 590 G S +P ++ +L+KLEEFV DE L K + LCYIQ Sbjct: 78 NHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQ 137 Query: 589 RVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQA 410 RVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQA Sbjct: 138 RVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQA 197 Query: 409 SYITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGY 230 SYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKP+GVDFRASCFCHKKTIDMGY Sbjct: 198 SYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGY 257 Query: 229 ICSVCLSIFCKHHKKCSTCGSVFGQA 152 ICSVCLSIFC+HHKKCSTCGSVFGQ+ Sbjct: 258 ICSVCLSIFCEHHKKCSTCGSVFGQS 283 >ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata] Length = 301 Score = 305 bits (782), Expect = 2e-80 Identities = 161/266 (60%), Positives = 183/266 (68%), Gaps = 5/266 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NP FW ++FS+FL+H IATG + + Sbjct: 23 NPLFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTS 77 Query: 754 IEG---SENERLPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQ 590 G S +P L+ +L+KLE+FV DE L E+ + LCYIQ Sbjct: 78 NHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQ 137 Query: 589 RVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQA 410 RVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQA Sbjct: 138 RVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQA 197 Query: 409 SYITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGY 230 SYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKP+GVDFRASCFCHKKTIDMGY Sbjct: 198 SYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMGY 257 Query: 229 ICSVCLSIFCKHHKKCSTCGSVFGQA 152 ICSVCLSIFC+HHKKCSTCGSVFGQ+ Sbjct: 258 ICSVCLSIFCEHHKKCSTCGSVFGQS 283 >ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum] gi|557094384|gb|ESQ34966.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum] Length = 300 Score = 304 bits (779), Expect = 3e-80 Identities = 161/265 (60%), Positives = 182/265 (68%), Gaps = 4/265 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW + FS+FL+H IATG + + Sbjct: 23 NPFFWSTTS-----IKFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTP 77 Query: 754 IEGSENER--LPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQR 587 E+ +P L+ +L+KLE+F DE L E+ + LCYIQR Sbjct: 78 NGNFESSGSGMPALFGSLLEKLEDFAAKDEELSKEEEHEDRIASSLLSGSLSMALCYIQR 137 Query: 586 VFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQAS 407 VFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQAS Sbjct: 138 VFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGTQNSAFLQQAS 197 Query: 406 YITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYI 227 YITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKPVGVDFRASCFCHKKTIDMGYI Sbjct: 198 YITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPVGVDFRASCFCHKKTIDMGYI 257 Query: 226 CSVCLSIFCKHHKKCSTCGSVFGQA 152 CSVCLSIFC+HHKKCSTCGSVFGQ+ Sbjct: 258 CSVCLSIFCEHHKKCSTCGSVFGQS 282 >ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X2 [Citrus sinensis] Length = 293 Score = 303 bits (775), Expect = 1e-79 Identities = 163/265 (61%), Positives = 178/265 (67%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW LSFS+FL H IATG N + Sbjct: 23 NPFFWSSSS-----LSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFR 578 + N R+P+L + +LQ LEEF+ DE+L K CYIQRVFR Sbjct: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SGLLHPQPR GSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYIT Sbjct: 138 SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 192 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGV+ KPQ LDGLFQYL TIF TDLHSR FLQLPKPVGVDFRASCFCHK TIDMGYICSV Sbjct: 193 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 252 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSI+CKH KKCSTCGSVFGQA + Sbjct: 253 CLSIYCKHLKKCSTCGSVFGQAQTQ 277 >ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum tuberosum] Length = 290 Score = 303 bits (775), Expect = 1e-79 Identities = 160/265 (60%), Positives = 182/265 (68%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NP+FW +F +F++H IATG N S Sbjct: 23 NPYFWSSMKNTA--FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSS 80 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXLCYIQRVFR 578 ++ +E +L+KLE+FV DE L ++ + LCYIQRVFR Sbjct: 81 MQRAEC---------LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSMALCYIQRVFR 131 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSMVPIDSCVIG+QHSAFLQQASYIT Sbjct: 132 SGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYIT 191 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ+ DGLFQYLST+FATDLHSR FLQLP+PVGVDFRASCFCHK TIDMG+ICSV Sbjct: 192 GGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTIDMGFICSV 251 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGS FG+A + Sbjct: 252 CLSIFCKHHKKCSTCGSNFGEARKQ 276 >ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum lycopersicum] Length = 290 Score = 303 bits (775), Expect = 1e-79 Identities = 160/265 (60%), Positives = 182/265 (68%), Gaps = 1/265 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NP+FW +F +F++H IATG N S Sbjct: 23 NPYFWSSMKNTA--FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSS 80 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXLCYIQRVFR 578 ++ +E +L+KLE+FV DE L ++ + LCYIQRVFR Sbjct: 81 MQRAEC---------LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFR 131 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSMVPIDSCVIG+QHSAFLQQASYIT Sbjct: 132 SGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYIT 191 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GGVYLKPQ+ DGLFQYLST+FATDLHSR FLQLP+PVGVDFRASCFCHK TIDMG+ICSV Sbjct: 192 GGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTIDMGFICSV 251 Query: 217 CLSIFCKHHKKCSTCGSVFGQANPE 143 CLSIFCKHHKKCSTCGS FG+A + Sbjct: 252 CLSIFCKHHKKCSTCGSNFGEARKQ 276 >ref|XP_004500559.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X2 [Cicer arietinum] Length = 294 Score = 296 bits (758), Expect = 9e-78 Identities = 151/262 (57%), Positives = 174/262 (66%), Gaps = 1/262 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW FSEFL+ IATG N ++ Sbjct: 23 NPFFW-----TTFPFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYIYDSTSNR 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFR 578 S N +P LYS +L LEEF+ D++L + CYIQR FR Sbjct: 78 NHASTNGTMPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG +HPQPRILCLQGS DGPEQYVA+MNAIFSAQRS VP+DSC IG+ +SAFLQQASYIT Sbjct: 138 SGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GG+Y +P +DGLFQYLST+FATDLHSR FL+LPK +GVDFRASCFCHK+TIDMGY+CSV Sbjct: 198 GGIYYRPPQMDGLFQYLSTVFATDLHSRAFLRLPKSLGVDFRASCFCHKQTIDMGYVCSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQA 152 CLSIFC+HH KCSTC SVFGQA Sbjct: 258 CLSIFCEHHDKCSTCSSVFGQA 279 >ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phaseolus vulgaris] gi|561010492|gb|ESW09399.1| hypothetical protein PHAVU_009G124300g [Phaseolus vulgaris] Length = 292 Score = 295 bits (754), Expect = 3e-77 Identities = 152/262 (58%), Positives = 174/262 (66%), Gaps = 1/262 (0%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW F+EFL+ IATG N + Sbjct: 23 NPFFW-----TTFPFPFAEFLSQVLAFLNSILLLGQLNQLIVIATGCNSCAYVYDSTSER 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFR 578 GS +P LYS +L L EF+ D++LE S+ CYIQR FR Sbjct: 78 NHGSTTGTMPALYSNLLHNLHEFLARDKQLEASHKPGTVPSSLLSGSLSMALCYIQRAFR 137 Query: 577 SGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 398 SG + PQPRILCLQG+ DGPEQYVA+MNAIFSAQRS VPIDSC IG+ +SAFLQQASYIT Sbjct: 138 SGPMPPQPRILCLQGTADGPEQYVAIMNAIFSAQRSTVPIDSCYIGSNNSAFLQQASYIT 197 Query: 397 GGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYICSV 218 GG+Y KP LDGL+QYLST+FATDLHSR FL+LPK VGVDFRASCFCHK+TIDMG++CSV Sbjct: 198 GGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGFVCSV 257 Query: 217 CLSIFCKHHKKCSTCGSVFGQA 152 CLSIFC+HH KCSTCGSVFGQA Sbjct: 258 CLSIFCEHHDKCSTCGSVFGQA 279 >ref|XP_003523449.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1 [Glycine max] Length = 294 Score = 291 bits (746), Expect = 2e-76 Identities = 151/264 (57%), Positives = 171/264 (64%), Gaps = 3/264 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NPFFW F+EFL+ IATG N K Sbjct: 23 NPFFWSTFP-----FPFAEFLSQVLAFLNTILLLGQLNQVIVIATGCNSCGYVYDSTSDK 77 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL---CYIQRV 584 GS +P LYS +L L+EF+ D +L+ CYIQR Sbjct: 78 NHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPSSLLSGSLSMALCYIQRA 137 Query: 583 FRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 404 FRSG + PQPRILCLQG+ DGPEQYVA+MNAIFSAQ S VPIDSC IG+ +SAFLQQASY Sbjct: 138 FRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQQASY 197 Query: 403 ITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYIC 224 ITGG+Y KP LDGL+QYLST+FATDLHSR FL+LPK VGVDFRASCFCHK+TIDMGY+C Sbjct: 198 ITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGYVC 257 Query: 223 SVCLSIFCKHHKKCSTCGSVFGQA 152 SVCLSIFC+HH KCSTCGSVFGQA Sbjct: 258 SVCLSIFCEHHDKCSTCGSVFGQA 281 >ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] gi|41053068|dbj|BAD08012.1| putative TFIIH basal transcription factor complex p34 subunit [Oryza sativa Japonica Group] gi|113535279|dbj|BAF07662.1| Os02g0125800 [Oryza sativa Japonica Group] gi|215768495|dbj|BAH00724.1| unnamed protein product [Oryza sativa Japonica Group] Length = 289 Score = 291 bits (744), Expect = 4e-76 Identities = 149/267 (55%), Positives = 176/267 (65%), Gaps = 3/267 (1%) Frame = -1 Query: 934 NPFFWGXXXXXXXTLSFSEFLAHXXXXXXXXXXXXXXXXXXXIATGVNXXXXXXXXXXSK 755 NP FW L F++F AH IA G++ + Sbjct: 21 NPLFWATAA-----LPFADFFAHLIHYVNSLLLLNHLNHVVVIAAGLSSCTYIFDSSDAS 75 Query: 754 IEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL---CYIQRV 584 G+ + + +++ +K++EF+ D R SN CYIQRV Sbjct: 76 ASGAAD--VAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLSGALSLALCYIQRV 133 Query: 583 FRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 404 FRSG HPQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVPIDSC++G Q SAFLQQASY Sbjct: 134 FRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSAFLQQASY 193 Query: 403 ITGGVYLKPQLLDGLFQYLSTIFATDLHSRRFLQLPKPVGVDFRASCFCHKKTIDMGYIC 224 ITGGVYLKPQ L+GLFQYL+ +FATDLHSR FL+LPK +GVDFRASCFCHKKTIDMGY+C Sbjct: 194 ITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFCHKKTIDMGYVC 253 Query: 223 SVCLSIFCKHHKKCSTCGSVFGQANPE 143 SVCLSIFCK+HKKCSTCGS F + P+ Sbjct: 254 SVCLSIFCKYHKKCSTCGSEFNRVMPD 280