BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00005783
         (204 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307429.2| basal transcription factor complex subunit-r...    75   1e-11
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...    72   1e-10
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...    70   2e-10
ref|XP_007019037.1| Basal transcription factor complex subunit-r...    69   5e-10
ref|XP_007019036.1| Basal transcription factor complex subunit-r...    69   5e-10
ref|NP_564050.1| basal transcription factor complex subunit-rela...    69   7e-10
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...    68   1e-09
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...    68   1e-09
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr...    68   2e-09
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...    67   2e-09
ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, par...    67   2e-09
ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prun...    66   4e-09
ref|XP_004170865.1| PREDICTED: general transcription factor IIH ...    63   4e-08
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...    63   4e-08
ref|XP_004500559.1| PREDICTED: general transcription factor IIH ...    62   6e-08
ref|XP_004500558.1| PREDICTED: general transcription factor IIH ...    62   6e-08
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...    62   1e-07
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...    62   1e-07
ref|XP_003601046.1| General transcription factor IIH subunit [Me...    61   1e-07
ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phas...    59   7e-07

>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
           transcription factor complex subunit-related family
           protein [Populus trichocarpa]
          Length = 298

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P+LYS++LQKLEEF+I DE+L K  +                LCYIQRVFRSG LHPQP
Sbjct: 88  MPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFRSGPLHPQP 147

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 148 RILCLQGS 155


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 38/69 (55%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS--NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQ 29
           +P LYS +LQKLE+F+I DE+L K   +                LCYIQR+FRSG LHPQ
Sbjct: 86  IPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASSLLSGSLSMALCYIQRIFRSGPLHPQ 145

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 146 PRILCLQGS 154


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
           gi|482574167|gb|EOA38354.1| hypothetical protein
           CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQ 29
           +P L++S+L KLE+FV  DE L  E+ N                LCYIQRVFRSG LHPQ
Sbjct: 89  MPPLFASLLNKLEDFVTKDEELSREEGNEDRTPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 149 PRILCLQGS 157


>ref|XP_007019037.1| Basal transcription factor complex subunit-related isoform 2
           [Theobroma cacao] gi|508724365|gb|EOY16262.1| Basal
           transcription factor complex subunit-related isoform 2
           [Theobroma cacao]
          Length = 274

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 38/68 (55%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P + SS+LQKLEEF+I DE+L K                   LCYIQRVFRSG LHP P
Sbjct: 86  MPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFRSGALHPHP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_007019036.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao] gi|508724364|gb|EOY16261.1| Basal
           transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 38/68 (55%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P + SS+LQKLEEF+I DE+L K                   LCYIQRVFRSG LHP P
Sbjct: 86  MPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVFRSGALHPHP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
           [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
           unknown [Arabidopsis thaliana]
           gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
           thaliana] gi|332191584|gb|AEE29705.1| basal
           transcription factor complex subunit-related protein
           [Arabidopsis thaliana]
          Length = 301

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 37/69 (53%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS--NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQ 29
           +P ++ S+L+KLEEFV  DE L K   +                LCYIQRVFRSG LHPQ
Sbjct: 89  MPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 149 PRILCLQGS 157


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQ 29
           +P L+ S+L+KLE+FV  DE L  E+ +                LCYIQRVFRSG LHPQ
Sbjct: 89  MPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 149 PRILCLQGS 157


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P L S++LQKLEEFV  DE+L K                    CYIQRVFR+G LHPQP
Sbjct: 87  MPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQP 146

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 147 RILCLQGS 154


>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
           gi|557094384|gb|ESQ34966.1| hypothetical protein
           EUTSA_v10008316mg [Eutrema salsugineum]
          Length = 300

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQ 29
           +P L+ S+L+KLE+F   DE L  E+ +                LCYIQRVFRSG LHPQ
Sbjct: 88  MPALFGSLLEKLEDFAAKDEELSKEEEHEDRIASSLLSGSLSMALCYIQRVFRSGHLHPQ 147

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 148 PRILCLQGS 156


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Citrus sinensis]
          Length = 298

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P+L +++LQ LEEF+  DE+L K                    CYIQRVFRSGLLHPQP
Sbjct: 86  MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, partial [Citrus
           clementina] gi|557536296|gb|ESR47414.1| hypothetical
           protein CICLE_v100020021mg, partial [Citrus clementina]
          Length = 174

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P+L +++LQ LEEF+  DE+L K                    CYIQRVFRSGLLHPQP
Sbjct: 86  MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
           gi|462420187|gb|EMJ24450.1| hypothetical protein
           PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/68 (54%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P    ++LQKLEEFVI DE+L K                    CYIQRVFRSG LHPQP
Sbjct: 86  MPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALCYIQRVFRSGPLHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 187

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDER-LEKSNXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P L + +L+ LEEFVI DE+ +++                  LCYIQ+VFRSG LHPQP
Sbjct: 86  MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDER-LEKSNXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P L + +L+ LEEFVI DE+ +++                  LCYIQ+VFRSG LHPQP
Sbjct: 86  MPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004500559.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X2 [Cicer arietinum]
          Length = 294

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P LYS++L  LEEF+  D++L   +                  CYIQR FRSG +HPQP
Sbjct: 86  MPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAFRSGPMHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004500558.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Cicer arietinum]
          Length = 315

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P LYS++L  LEEF+  D++L   +                  CYIQR FRSG +HPQP
Sbjct: 86  MPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAFRSGPMHPQP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           2 [Fragaria vesca subsp. vesca]
          Length = 298

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P L S +L+KLEEFV  DE+L K  +                LCYIQ+VFRSG  HP P
Sbjct: 86  MPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFRSGPQHPHP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           1 [Fragaria vesca subsp. vesca]
          Length = 300

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXLCYIQRVFRSGLLHPQP 26
           +P L S +L+KLEEFV  DE+L K  +                LCYIQ+VFRSG  HP P
Sbjct: 86  MPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVFRSGPQHPHP 145

Query: 25  RILCLQGS 2
           RILCLQGS
Sbjct: 146 RILCLQGS 153


>ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490094|gb|AES71297.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 340

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL--CYIQRVFRSGLLHPQ 29
           +P +YS++L  L+EFV  D++L   +                +  CYIQR FRSG +HPQ
Sbjct: 87  MPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLLSGALSMALCYIQRAFRSGPMHPQ 146

Query: 28  PRILCLQGS 2
           PRILCLQGS
Sbjct: 147 PRILCLQGS 155


>ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phaseolus vulgaris]
           gi|561010492|gb|ESW09399.1| hypothetical protein
           PHAVU_009G124300g [Phaseolus vulgaris]
          Length = 292

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -3

Query: 202 LPTLYSSVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXL-CYIQRVFRSGLLHPQP 26
           +P LYS++L  L EF+  D++LE S+                  CYIQR FRSG + PQP
Sbjct: 86  MPALYSNLLHNLHEFLARDKQLEASHKPGTVPSSLLSGSLSMALCYIQRAFRSGPMPPQP 145

Query: 25  RILCLQGS 2
           RILCLQG+
Sbjct: 146 RILCLQGT 153