BLASTX nr result
ID: Cocculus23_contig00005615
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00005615
(2250 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 370 e-129
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 373 e-129
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 369 e-129
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 369 e-129
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 368 e-128
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 373 e-128
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 373 e-128
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 359 e-125
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 359 e-125
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 352 e-125
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 359 e-124
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 359 e-124
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 349 e-119
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 349 e-119
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 348 e-119
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 345 e-117
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 343 e-117
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 344 e-117
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 344 e-117
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 323 e-115
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 370 bits (950), Expect(2) = e-129
Identities = 182/313 (58%), Positives = 221/313 (70%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ ATVSD + DAT LWHMRLGH E KL
Sbjct: 407 NLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLK 466
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 467 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVW 526
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 527 PYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTV 586
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNR ++ K RCMLSNAGL KQFWAEAV+ ACYLINR PS A KTP+
Sbjct: 587 PHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPI 645
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SSVKGY++WCPE KK +
Sbjct: 646 EVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVV 704
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 705 ISRNVVFHESIML 717
Score = 121 bits (304), Expect(2) = e-129
Identities = 52/104 (50%), Positives = 79/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 297 SDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 356
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 357 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400
Score = 106 bits (264), Expect = 5e-20
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACS 346
+++ K ++ D F +WQ ++ L QEL+ AL +K T+ D K +++A S
Sbjct: 1 MTSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKRDRKAMS 60
Query: 347 TIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDH 526
I L L+ + V++E +A LW KLE M+K ++++LK+KLF ++ + ++DH
Sbjct: 61 YIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDH 120
Query: 527 LEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTN 706
L F ++ADL +++ ++D L LL SLP Y + T++Y +D LT + V AL
Sbjct: 121 LSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHA 180
Query: 707 NEIRKR--DKQATKSTSEALNVRG 772
E K+ + + S +E L VRG
Sbjct: 181 KEKMKKMVPSEGSNSQAEGLVVRG 204
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 373 bits (958), Expect(2) = e-129
Identities = 182/318 (57%), Positives = 225/318 (70%), Gaps = 2/318 (0%)
Frame = +1
Query: 1303 GI*QNNLYFLKGSTIVGDAATVSDEV--VDATRLWHMRLGHAGEXXXXXXXXXXXXXXXX 1476
G+ + LYFL+GST+ G A S E D T+LWH+RLGH GE
Sbjct: 380 GVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHK 439
Query: 1477 TCKLGFCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDY 1656
L FCEHCV GK R KF AIH+T+GT DY+HS+ WGP +V+S+GG R+FV+ +DDY
Sbjct: 440 VKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDY 499
Query: 1657 SRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIA 1836
SR WVY MKHKSE F WK L+E QTGKKIKRLR+DNG E+ F + C+DEGIA
Sbjct: 500 SRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIA 559
Query: 1837 RYFTVPDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIE 2016
R+ TV +T QNGVAERMN+TLLE+ RCMLSNAGL ++FWAEAV+ ACYLINR P I+
Sbjct: 560 RHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQ 619
Query: 2017 GKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPE 2196
KTPME+WSGK A DY +L FGC+AY+HV + KL+PRAKKG+F+G VKG+RIW P
Sbjct: 620 CKTPMEMWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPA 678
Query: 2197 AKKTILSRDVTFNESDML 2250
K+ I+SR+V F+ES +L
Sbjct: 679 EKRVIMSRNVVFDESPLL 696
Score = 117 bits (292), Expect(2) = e-129
Identities = 50/108 (46%), Positives = 79/108 (73%)
Frame = +3
Query: 987 HSDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIRE 1166
HSD W+LDSG +YHICP R+WF +++ +DG ++ M+N + CK G G+IK++ HDG+
Sbjct: 275 HSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCT 334
Query: 1167 LNDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRGYL 1310
LN+VR+VP + KNLIS+ L+S GF S + GV++V G+ ++++G +
Sbjct: 335 LNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVM 382
Score = 124 bits (311), Expect = 2e-25
Identities = 72/184 (39%), Positives = 104/184 (56%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALEEKPTEMSEKDWLKLNKQACSTI 352
+S V+++KF GRN+F +WQ ++ L Q L + + + L ++A STI
Sbjct: 1 MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTI 60
Query: 353 RLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLE 532
LCLA D V E +A LW KLE YM+K N+L LK++LF + EG + +HLE
Sbjct: 61 MLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLE 120
Query: 533 GFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNE 712
N L+ +L N+D I DED L LL SLP +E+ + I GKD ++ E V SAL + E
Sbjct: 121 QLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRE 180
Query: 713 IRKR 724
+R +
Sbjct: 181 LRHK 184
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 369 bits (946), Expect(2) = e-129
Identities = 179/313 (57%), Positives = 220/313 (70%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ ATVSD + DAT LWHMRLGH E KL
Sbjct: 392 NLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLK 451
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T V+DYSR+VW
Sbjct: 452 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVW 511
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 512 PYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTV 571
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNAGL KQFWAEAV+ ACYLINR P AI+ KTP+
Sbjct: 572 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPI 631
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
+VWSG PA +Y L +FGC+AY HV + KL+PR K +FLG S VKGY++WCPE KK +
Sbjct: 632 KVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVV 690
Query: 2212 LSRDVTFNESDML 2250
+SR V F+ES ML
Sbjct: 691 ISRYVVFHESVML 703
Score = 121 bits (304), Expect(2) = e-129
Identities = 52/104 (50%), Positives = 79/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 282 SDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 341
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 342 SDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMK 385
Score = 84.3 bits (207), Expect = 2e-13
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACS 346
+++ K ++ D F +WQ ++ L Q+L+ A +K T+ D K++++A S
Sbjct: 1 MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAFSGFDKRTQDWSNDEKKMDRKAMS 60
Query: 347 TIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDH 526
I L L+ + V++E +A LW KLE M+K T ++DH
Sbjct: 61 YIHLHLSNNILQEVLKEETAAGLWLKLEQICMTK---------------DLTNDGSVMDH 105
Query: 527 LEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTN 706
L F ++ADL +++ +ED L LL SLP Y + T++Y +D LT + V AL
Sbjct: 106 LSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHA 165
Query: 707 NEIRKR--DKQATKSTSEALNVRG 772
E K+ + + S +E L V+G
Sbjct: 166 KEKMKKMVPSEGSNSQAEGLVVQG 189
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 369 bits (946), Expect(2) = e-129
Identities = 179/313 (57%), Positives = 220/313 (70%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ ATVSD + DAT LWHMRLGH E KL
Sbjct: 224 NLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLK 283
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T V+DYSR+VW
Sbjct: 284 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVW 343
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 344 PYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTV 403
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNAGL KQFWAEAV+ ACYLINR P AI+ KTP+
Sbjct: 404 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPI 463
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
+VWSG PA +Y L +FGC+AY HV + KL+PR K +FLG S VKGY++WCPE KK +
Sbjct: 464 KVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVV 522
Query: 2212 LSRDVTFNESDML 2250
+SR V F+ES ML
Sbjct: 523 ISRYVVFHESVML 535
Score = 121 bits (304), Expect(2) = e-129
Identities = 52/104 (50%), Positives = 79/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 114 SDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 173
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 174 SDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMK 217
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 368 bits (945), Expect(2) = e-128
Identities = 179/313 (57%), Positives = 219/313 (69%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 316 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLK 375
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 376 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVW 435
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT +K+K LR+DNG E S F C+ EGI R++TV
Sbjct: 436 PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTV 495
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNA L KQFWAEAV+ ACYLINR PS AI+ KTP+
Sbjct: 496 PHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 555
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PR K +FLG S VKGY++WCPE KK +
Sbjct: 556 EVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVV 614
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 615 ISRNVVFHESIML 627
Score = 120 bits (301), Expect(2) = e-128
Identities = 52/104 (50%), Positives = 78/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 206 SDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 265
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 266 LDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 309
Score = 71.2 bits (173), Expect = 2e-09
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 440 MSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLDEVISDEDRELTLLNSL 619
M+K ++++LK+KLF ++ + ++DHL F ++ADL +++ +ED L LL SL
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 620 PDEYEHLSTTLIYGKDKLTFEAVSSALTNNEIRKR--DKQATKSTSEALNVRG 772
P Y + T++Y +D LT + V AL E K+ + + S +E L VRG
Sbjct: 61 PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 113
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 373 bits (957), Expect(2) = e-128
Identities = 180/313 (57%), Positives = 222/313 (70%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 614 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLK 673
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 674 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVW 733
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 734 PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTV 793
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RC+LSNAGL KQFWAEAV+ ACYLINR PS AI+ KTP+
Sbjct: 794 PHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 853
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VKGY++WCPE KK +
Sbjct: 854 EVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVV 912
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 913 ISRNVVFHESVML 925
Score = 114 bits (285), Expect(2) = e-128
Identities = 49/104 (47%), Positives = 77/104 (74%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WIL++ C YH+CPNRDWF +++ + V M +D C+ GIGT+++K+ DG IR L
Sbjct: 504 SDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 563
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 564 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 607
Score = 95.9 bits (237), Expect = 7e-17
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%)
Frame = +2
Query: 221 FGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACSTIRLCLAKDQKYFVMR 394
F +WQ ++ L Q+L+ AL +K T D K +++A S I L L+ + V++
Sbjct: 224 FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 283
Query: 395 ETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLDE 574
E A LW KLE M+K ++++LK+ LF ++ + ++DHL F +IADL +++
Sbjct: 284 EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 343
Query: 575 VISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNEIRKRDKQATKSTSE 754
+ED L LL SLP Y + T++Y +D LT + V AL E K+ + S S+
Sbjct: 344 KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 403
Query: 755 A 757
A
Sbjct: 404 A 404
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 373 bits (957), Expect(2) = e-128
Identities = 180/313 (57%), Positives = 222/313 (70%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 407 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLK 466
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 467 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVW 526
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 527 PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTV 586
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RC+LSNAGL KQFWAEAV+ ACYLINR PS AI+ KTP+
Sbjct: 587 PHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 646
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VKGY++WCPE KK +
Sbjct: 647 EVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVV 705
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 706 ISRNVVFHESVML 718
Score = 114 bits (285), Expect(2) = e-128
Identities = 49/104 (47%), Positives = 77/104 (74%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WIL++ C YH+CPNRDWF +++ + V M +D C+ GIGT+++K+ DG IR L
Sbjct: 297 SDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTL 356
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 357 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400
Score = 95.9 bits (237), Expect = 7e-17
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%)
Frame = +2
Query: 221 FGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACSTIRLCLAKDQKYFVMR 394
F +WQ ++ L Q+L+ AL +K T D K +++A S I L L+ + V++
Sbjct: 17 FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 76
Query: 395 ETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLDE 574
E A LW KLE M+K ++++LK+ LF ++ + ++DHL F +IADL +++
Sbjct: 77 EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 136
Query: 575 VISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNEIRKRDKQATKSTSE 754
+ED L LL SLP Y + T++Y +D LT + V AL E K+ + S S+
Sbjct: 137 KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 196
Query: 755 A 757
A
Sbjct: 197 A 197
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 359 bits (922), Expect(2) = e-125
Identities = 175/313 (55%), Positives = 215/313 (68%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 442 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLK 501
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA S GG RY +T VDDYSR+VW
Sbjct: 502 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVW 561
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT KK+K LR+DNG E+ S F C+ EGI ++TV
Sbjct: 562 PYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTV 621
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMN ++ K RCMLSNA L KQFWAEAV+ CYLINR PS A + KTP+
Sbjct: 622 PHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPI 681
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VKGY++WCPE KK +
Sbjct: 682 EVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVV 740
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES +L
Sbjct: 741 ISRNVVFHESVIL 753
Score = 118 bits (296), Expect(2) = e-125
Identities = 52/104 (50%), Positives = 78/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ TYH+CPNRDWF +++ L G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 332 SDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTL 391
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 392 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435
Score = 102 bits (253), Expect = 1e-18
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACS 346
+++ K ++ D F +WQ ++ L Q+L+ AL +K T+ D K +++A S
Sbjct: 36 MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDRKAMS 95
Query: 347 TIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDH 526
I L L+ + V++E +A LW KLE M+K ++++LK+KLF ++ + ++DH
Sbjct: 96 YIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDH 155
Query: 527 LEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTN 706
L F ++ADL +++ +ED L LL SLP Y + T++Y D L + V AL
Sbjct: 156 LSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHA 215
Query: 707 NEIRKR--DKQATKSTSEALNVRG 772
E K+ + + S +E L VRG
Sbjct: 216 KEKMKKMVPSEGSNSQAEGLVVRG 239
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 359 bits (922), Expect(2) = e-125
Identities = 175/313 (55%), Positives = 215/313 (68%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 442 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLK 501
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA S GG RY +T VDDYSR+VW
Sbjct: 502 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVW 561
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT KK+K LR+DNG E+ S F C+ EGI ++TV
Sbjct: 562 PYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTV 621
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMN ++ K RCMLSNA L KQFWAEAV+ CYLINR PS A + KTP+
Sbjct: 622 PHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPI 681
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VKGY++WCPE KK +
Sbjct: 682 EVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVV 740
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES +L
Sbjct: 741 ISRNVVFHESVIL 753
Score = 118 bits (296), Expect(2) = e-125
Identities = 52/104 (50%), Positives = 78/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ TYH+CPNRDWF +++ L G V M +D C+ GIGT+++K+ DG IR L
Sbjct: 332 SDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTL 391
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 392 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435
Score = 102 bits (253), Expect = 1e-18
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALE--EKPTEMSEKDWLKLNKQACS 346
+++ K ++ D F +WQ ++ L Q+L+ AL +K T+ D K +++A S
Sbjct: 36 MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDRKAMS 95
Query: 347 TIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDH 526
I L L+ + V++E +A LW KLE M+K ++++LK+KLF ++ + ++DH
Sbjct: 96 YIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDH 155
Query: 527 LEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTN 706
L F ++ADL +++ +ED L LL SLP Y + T++Y D L + V AL
Sbjct: 156 LSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHA 215
Query: 707 NEIRKR--DKQATKSTSEALNVRG 772
E K+ + + S +E L VRG
Sbjct: 216 KEKMKKMVPSEGSNSQAEGLVVRG 239
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 352 bits (902), Expect(2) = e-125
Identities = 170/311 (54%), Positives = 216/311 (69%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLGFC 1497
+LY L+G+TIVG+ A V+D + ++ LWHMRLGH E KL FC
Sbjct: 349 DLYHLQGTTIVGNVAAVTDSLSNSD-LWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFC 407
Query: 1498 EHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVWVY 1677
EHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW Y
Sbjct: 408 EHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWPY 467
Query: 1678 PMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTVPD 1857
+KHK E VF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++TV
Sbjct: 468 FLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVSH 527
Query: 1858 TH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPMEV 2037
T QNGV ERMNRT++ K RCMLSNAGL ++FWAEA + ACYLINR PS AI+ KTP+E+
Sbjct: 528 TPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIEM 587
Query: 2038 WSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTILS 2217
WSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VK Y++WCPE +K ++S
Sbjct: 588 WSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCPETQKVVIS 646
Query: 2218 RDVTFNESDML 2250
R+V FNE+ ML
Sbjct: 647 RNVIFNETVML 657
Score = 125 bits (313), Expect(2) = e-125
Identities = 53/104 (50%), Positives = 79/104 (75%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SDEW+LD+GCTYH+CPNRDWF +++ + G V M ++ CK G+GTI++K+ DG IR L
Sbjct: 239 SDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTL 298
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P LK+NLIS+ L+ G++ S G++KV G+LVV++
Sbjct: 299 SDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMK 342
Score = 85.9 bits (211), Expect = 7e-14
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Frame = +2
Query: 350 IRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHL 529
I L L+ + V++E +A LW KLE M+K ++++LK+KLF ++ + ++DHL
Sbjct: 4 IHLHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 63
Query: 530 EGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNN 709
F ++ADL +++ +ED L LL SLP Y + T++Y +D LT + V AL
Sbjct: 64 STFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAK 123
Query: 710 EIRKR--DKQATKSTSEALNVRG 772
E K+ + + S E+L VRG
Sbjct: 124 EKMKKMVPSEGSNSQPESLVVRG 146
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 359 bits (921), Expect(2) = e-124
Identities = 176/313 (56%), Positives = 218/313 (69%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 239 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLK 298
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 299 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVW 358
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++T
Sbjct: 359 PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTP 418
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
QNGVAERMNRT++ K RCMLSNAGL KQFWA AV+ CYLINR PS AI+ KTP+
Sbjct: 419 Q----QNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPI 474
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
+VWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SS VKGY++WCPE KK +
Sbjct: 475 KVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVV 533
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 534 ISRNVVFHESVML 546
Score = 117 bits (293), Expect(2) = e-124
Identities = 50/104 (48%), Positives = 77/104 (74%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIG +++K+ DG I L
Sbjct: 129 SDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTL 188
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 189 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 232
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 359 bits (921), Expect(2) = e-124
Identities = 176/313 (56%), Positives = 218/313 (69%), Gaps = 2/313 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGDAATVSDEVV--DATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+G+TI+G+ A VSD + DAT LWHMRLGH E KL
Sbjct: 239 NLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLK 298
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHC+ GK RVKF T+ H T G DYVHS++WGPA+ S GG RY +T VDDYSR+VW
Sbjct: 299 FCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVW 358
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C+ EGI R++T
Sbjct: 359 PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTP 418
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
QNGVAERMNRT++ K RCMLSNAGL KQFWA AV+ CYLINR PS AI+ KTP+
Sbjct: 419 Q----QNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPI 474
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
+VWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SS VKGY++WCPE KK +
Sbjct: 475 KVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVV 533
Query: 2212 LSRDVTFNESDML 2250
+SR+V F+ES ML
Sbjct: 534 ISRNVVFHESVML 546
Score = 117 bits (293), Expect(2) = e-124
Identities = 50/104 (48%), Positives = 77/104 (74%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
SD+WILD+ CTYH+CPNRDWF +++ + G V M +D C+ GIG +++K+ DG I L
Sbjct: 129 SDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTL 188
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
+DVR++P+LK++LIS+ L+ G+K S G++KV G+LVV++
Sbjct: 189 SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 232
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 349 bits (895), Expect(2) = e-119
Identities = 166/319 (52%), Positives = 213/319 (66%), Gaps = 3/319 (0%)
Frame = +1
Query: 1300 GGI*QNNLYFLKGSTIVGD---AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXX 1470
G + LY L+G T+ G AA V+++ T LWHMRLGH
Sbjct: 392 GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451
Query: 1471 XXTCKLGFCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVD 1650
+ K+ FCEHC+ GK RV+F T++H T+GT DYVH+++WGP+K S+GG RY +T +D
Sbjct: 452 CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIID 511
Query: 1651 DYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEG 1830
DYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C+ EG
Sbjct: 512 DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEG 571
Query: 1831 IARYFTVPDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAA 2010
I R+ T+P T QNGVAERMNRT++ + RCMLS+A + K+FWAEA + ACYLINR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 2011 IEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWC 2190
+ KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG S VKGY++W
Sbjct: 632 LNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 2191 PEAKKTILSRDVTFNESDM 2247
PE KT +SR V FNES M
Sbjct: 691 PETGKTFMSRSVVFNESVM 709
Score = 108 bits (269), Expect(2) = e-119
Identities = 51/107 (47%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHLD-GRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILDS C++HIC R+WF S+K + G V M +DN C GIG++++K DG R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRGYL 1310
+VRY+P + +NLIS+ L++ G+K S GV+KV G+LV ++G L
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDL 394
Score = 89.0 bits (219), Expect = 9e-15
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Frame = +2
Query: 221 FGMWQCEVLDALV*-QELEIALEEKPTEMSE--KDWLKLNKQACSTIRLCLAKDQKYFVM 391
F +WQ ++ L + + AL+ +E + ++ +++A + I+L L D +
Sbjct: 14 FSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQLHLHNDILQECL 73
Query: 392 RETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLD 571
E ++ LW KLE MSK +++ +K KLF + E +I H+ F +++ADL++++
Sbjct: 74 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSME 133
Query: 572 EVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNE---IRKRDKQATK 742
DED L LL SLP+ Y + T++ +D+LT + V AL N E I ++ ++
Sbjct: 134 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 193
Query: 743 STSEALNVRG 772
S EAL+VRG
Sbjct: 194 SKGEALHVRG 203
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 349 bits (895), Expect(2) = e-119
Identities = 165/319 (51%), Positives = 213/319 (66%), Gaps = 3/319 (0%)
Frame = +1
Query: 1300 GGI*QNNLYFLKGSTIVGD---AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXX 1470
G + LY L+G T+ G AA ++++ T LWHMRLGH
Sbjct: 392 GDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451
Query: 1471 XXTCKLGFCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVD 1650
+ K+ FCEHC+ GK RV+F T++H T+GT DYVH+++WGP+K S+GG RY +T +D
Sbjct: 452 CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIID 511
Query: 1651 DYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEG 1830
DYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C+ EG
Sbjct: 512 DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEG 571
Query: 1831 IARYFTVPDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAA 2010
I R+ T+P T QNGVAERMNRT++ + RCMLS+A + K+FWAEA + ACYLINR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 2011 IEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWC 2190
+ KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG S VKGY++W
Sbjct: 632 LNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 2191 PEAKKTILSRDVTFNESDM 2247
PE KT +SR V FNES M
Sbjct: 691 PETGKTFMSRSVVFNESVM 709
Score = 107 bits (268), Expect(2) = e-119
Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHLD-GRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILDS C++HIC R+WF S+K + G V M +DN C GIG++++K DG R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRG 1304
+VRY+P + +NLIS+ L++ G+K S GV+KV G+LV ++G
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKG 392
Score = 89.0 bits (219), Expect = 9e-15
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Frame = +2
Query: 221 FGMWQCEVLDALV*-QELEIALEEKPTEMSE--KDWLKLNKQACSTIRLCLAKDQKYFVM 391
F +WQ ++ L + + AL+ +E + ++ +++A + I+L L D +
Sbjct: 14 FSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQLHLHNDILQECL 73
Query: 392 RETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLD 571
E ++ LW KLE MSK +++ +K KLF + E +I H+ F +++ADL++++
Sbjct: 74 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSME 133
Query: 572 EVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNE---IRKRDKQATK 742
DED L LL SLP+ Y + T++ +D+LT + V AL N E I ++ ++
Sbjct: 134 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 193
Query: 743 STSEALNVRG 772
S EAL+VRG
Sbjct: 194 SKGEALHVRG 203
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 348 bits (894), Expect(2) = e-119
Identities = 166/319 (52%), Positives = 213/319 (66%), Gaps = 3/319 (0%)
Frame = +1
Query: 1300 GGI*QNNLYFLKGSTIVGD---AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXX 1470
G + LY L+G T+ G AA V+++ T LWHMRLGH
Sbjct: 392 GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451
Query: 1471 XXTCKLGFCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVD 1650
+ K+ FCEHC+ GK RV+F T++H T+GT DYVH+++WGP+K S+GG RY +T +D
Sbjct: 452 CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVID 511
Query: 1651 DYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEG 1830
DYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C+ EG
Sbjct: 512 DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEG 571
Query: 1831 IARYFTVPDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAA 2010
I R+ T+P T QNGVAERMNRT++ + RCMLS+A + K+FWAEA + ACYLINR PS
Sbjct: 572 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 631
Query: 2011 IEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWC 2190
+ KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG S VKGY++W
Sbjct: 632 LNKKTPIEVWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 690
Query: 2191 PEAKKTILSRDVTFNESDM 2247
PE KT +SR V FNES M
Sbjct: 691 PETGKTFMSRSVVFNESVM 709
Score = 108 bits (269), Expect(2) = e-119
Identities = 51/107 (47%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHLD-GRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILDS C++HIC R+WF S+K + G V M +DN C GIG++++K DG R L
Sbjct: 288 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRGYL 1310
+VRY+P + +NLIS+ L++ G+K S GV+KV G+LV ++G L
Sbjct: 348 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDL 394
Score = 87.0 bits (214), Expect = 3e-14
Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = +2
Query: 320 LKLNKQACSTIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQY 499
++ +++A + I+L L D + E ++ LW KLE MSK +++ +K KLF +
Sbjct: 50 IRKDQKALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKM 109
Query: 500 TEGMPMIDHLEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTF 679
E +I H+ F +++ADL++++ DED L LL SLP+ Y + T++ +D+LT
Sbjct: 110 KEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTL 169
Query: 680 EAVSSALTNNE---IRKRDKQATKSTSEALNVRG 772
+ V AL N E I ++ ++ S EAL+VRG
Sbjct: 170 KEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRG 203
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 345 bits (885), Expect(2) = e-117
Identities = 165/319 (51%), Positives = 212/319 (66%), Gaps = 3/319 (0%)
Frame = +1
Query: 1300 GGI*QNNLYFLKGSTIVGD---AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXX 1470
G + LY L+G T+ G AA V+++ T LWHMRLGH
Sbjct: 394 GDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 453
Query: 1471 XXTCKLGFCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVD 1650
+ K+ FCEHC+ GK RV+F T++H T+GT DYVH+++WGP+K S+GG RY +T +D
Sbjct: 454 YTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIID 513
Query: 1651 DYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEG 1830
DYSR+VW Y +KHK + F WK +IE QT +K+K L +DNGGE+ S F C+ EG
Sbjct: 514 DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEG 573
Query: 1831 IARYFTVPDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAA 2010
I R+ T+P T QNGVAERMNRT++ + RCMLS+A + K+FWAEA + ACYLINR PS
Sbjct: 574 IVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIP 633
Query: 2011 IEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWC 2190
+ KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG S VKGY++W
Sbjct: 634 LNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWN 692
Query: 2191 PEAKKTILSRDVTFNESDM 2247
PE KT +SR V FNES M
Sbjct: 693 PETGKTFMSRSVVFNESVM 711
Score = 108 bits (269), Expect(2) = e-117
Identities = 51/107 (47%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHLD-GRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILDS C++HIC R+WF S+K + G V M +DN C GIG++++K DG R L
Sbjct: 290 DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 349
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRGYL 1310
+VRY+P + +NLIS+ L++ G+K S GV+KV G+LV ++G L
Sbjct: 350 KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDL 396
Score = 88.6 bits (218), Expect = 1e-14
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Frame = +2
Query: 221 FGMWQCEVLDALV*-QELEIALEEKPTEMSE--KDWLKLNKQACSTIRLCLAKDQKYFVM 391
F +WQ + L + + AL+ +E + ++ +++A + I+L L D +
Sbjct: 16 FSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQLHLHNDILQECL 75
Query: 392 RETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFNRLIADLLNLD 571
E ++ LW KLE MSK +++ +K KLF + E +I H+ F +++ADL++++
Sbjct: 76 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEFKKIVADLVSME 135
Query: 572 EVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSALTNNE---IRKRDKQATK 742
DED L LL SLP+ Y + T++ +D+LT + V AL N E I ++ ++
Sbjct: 136 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 195
Query: 743 STSEALNVRG 772
S EAL+VRG
Sbjct: 196 SKGEALHVRG 205
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 343 bits (880), Expect(2) = e-117
Identities = 168/312 (53%), Positives = 208/312 (66%), Gaps = 2/312 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGD--AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+GST+ G AA VS + T LWHMRLGH E K+
Sbjct: 400 NLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMK 459
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHCV GK RVKF T++H+T+G DYVH+++WGP++ +GG RY +T +DDYSR+VW
Sbjct: 460 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVW 519
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + F WK IE QT K++K LR+DNGGE+ SD F C+ EGI R+ T+
Sbjct: 520 PYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTI 579
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNA + K+FWAEA ACYLINR PS + KTP+
Sbjct: 580 PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 639
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG S VK Y++W PE KT
Sbjct: 640 EVWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLWNPETNKTF 698
Query: 2212 LSRDVTFNESDM 2247
+ R V FN+S M
Sbjct: 699 MRRSVVFNKSVM 710
Score = 108 bits (271), Expect(2) = e-117
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHL-DGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILD+ C++HIC NRDWF S+K + +G V M +DN + GIG++++K HDG R L
Sbjct: 290 DEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTL 349
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRG 1304
DVR++P + +NLIS+ L++ G+K S GV+KV G+LV + G
Sbjct: 350 KDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIG 394
Score = 102 bits (255), Expect = 6e-19
Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*-QELEIALE----EKPTEMSEKDWLKLNKQ 337
+++ K ++ D + F +WQ ++ L +L+ ALE +K TE + ++ K +++
Sbjct: 1 MASIKYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRK-DRK 59
Query: 338 ACSTIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPM 517
A I+L L+ D V++E +A LW KLE MSK +++++K KLF ++ E +
Sbjct: 60 ALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSV 119
Query: 518 IDHLEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSA 697
++H+ F ++ DL++++ DED L LL SLP Y + T++ +D+LT V A
Sbjct: 120 LNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEA 179
Query: 698 LTNNEIRKR--DKQATKSTSEALNVRG 772
L N E K A+ S EAL VRG
Sbjct: 180 LQNREKMKGMVQSDASSSKGEALQVRG 206
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 344 bits (883), Expect(2) = e-117
Identities = 166/312 (53%), Positives = 210/312 (67%), Gaps = 2/312 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVG--DAATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+GST+ G AA VS + T +WHMRLGH E +
Sbjct: 295 NLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 354
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHCV GK RVKF T++H+T+G DYVH+++WGP++ S+GG RY +T +DDYSR+VW
Sbjct: 355 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVW 414
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + F WK +I+ QT K++K LR+DNGG + SD F C+ EGI + T+
Sbjct: 415 PYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTI 474
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNA + K+FWAEA ACYLINR PS ++ KTP+
Sbjct: 475 PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKTPI 534
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
EVWSG PA +Y L +FGC+AY HV + KL+PRA K LFLG S VKGY++W PE KT
Sbjct: 535 EVWSGMPA-NYSQLRVFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTF 593
Query: 2212 LSRDVTFNESDM 2247
+SR V FNES M
Sbjct: 594 MSRSVVFNESVM 605
Score = 107 bits (266), Expect(2) = e-117
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHL-DGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILD+ C++HIC NRDWF S+K + +G V M +DN + GIG++++K HDG R L
Sbjct: 185 DEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTL 244
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRG 1304
DVR++P + +NLIS+ L++ G+K S GV+KV G+LV + G
Sbjct: 245 KDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIG 289
Score = 64.7 bits (156), Expect = 2e-07
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +2
Query: 479 KLFQYQYTEGMPMIDHLEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIY 658
KLF ++ E +++H+ F ++ADL++++ DED L LL SLP Y + T++
Sbjct: 2 KLFSHKLQESGSILNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRDTILL 61
Query: 659 GKDKLTFEAVSSALTNNEIRKR--DKQATKSTSEALNVRG 772
+ +LT V AL N E K A+ S EAL VRG
Sbjct: 62 SRSELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRG 101
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 344 bits (883), Expect(2) = e-117
Identities = 166/312 (53%), Positives = 209/312 (66%), Gaps = 2/312 (0%)
Frame = +1
Query: 1318 NLYFLKGSTIVGD--AATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
NLY L+GST+ G AA V+ + + T LWHMRLGH E +
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 459
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCE CV GK RVKF T++H+T+G DYVH+++WGP++ S+GG RY +T +DDYSR+VW
Sbjct: 460 FCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVW 519
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
Y +KHK + F WK +IE QT K++K LR+DN GE+ SD F C+ EGI R+ T+
Sbjct: 520 PYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTI 579
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
P T QNGVAERMNRT++ K RCMLSNA + K+FWAEA ACYLINR PS + KTP+
Sbjct: 580 PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 639
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSSVKGYRIWCPEAKKTI 2211
E+WSG PA DY L +FGC+AY HV + KL+PRA K LFLG VKGY++W PE KT
Sbjct: 640 EIWSGMPA-DYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTF 698
Query: 2212 LSRDVTFNESDM 2247
+SR V FNES M
Sbjct: 699 MSRSVVFNESVM 710
Score = 105 bits (263), Expect(2) = e-117
Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Frame = +3
Query: 993 DEWILDSGCTYHICPNRDWFFSFKHL-DGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
DEWILD+ C++HI NRDWF S+K + +G V M NDN + GIG++++K HDG R L
Sbjct: 290 DEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTL 349
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIRG 1304
DVR++P + +NLIS+ L++ G+K S GV+KV G+LV + G
Sbjct: 350 KDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIG 394
Score = 107 bits (266), Expect = 3e-20
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 7/207 (3%)
Frame = +2
Query: 173 ISNAKVEVEKFDGRNNFGMWQCEVLDALV*-QELEIALE----EKPTEMSEKDWLKLNKQ 337
+++ K ++ D + F +WQ ++ L +L+ ALE +K TE + + K +++
Sbjct: 1 MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRK-DRK 59
Query: 338 ACSTIRLCLAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPM 517
A S I+L L+ D V++E +A LW KLE MSK +++++K KLF ++ E +
Sbjct: 60 ALSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSV 119
Query: 518 IDHLEGFNRLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGKDKLTFEAVSSA 697
++H+ F ++ADL++++ DED L LL SLP YE+ T++ +D+LT V A
Sbjct: 120 LNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEA 179
Query: 698 LTNNEIRKR--DKQATKSTSEALNVRG 772
L N E K A+ S EAL V+G
Sbjct: 180 LQNREKMKGMVQSDASSSKGEALQVKG 206
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 323 bits (828), Expect(2) = e-115
Identities = 161/315 (51%), Positives = 208/315 (66%), Gaps = 4/315 (1%)
Frame = +1
Query: 1315 NNLYFLKGSTIV-GDAATVSDEVVDATRLWHMRLGHAGEXXXXXXXXXXXXXXXXTCKLG 1491
+NLY L G T+ DA+ + + T +WH RLGH E T L
Sbjct: 397 SNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLP 456
Query: 1492 FCEHCVLGKKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFVTFVDDYSRRVW 1671
FCEHCV+ K+ R+KF +++ D +HS+VW ++ S+GG RYFV+F+DDYSRR+W
Sbjct: 457 FCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEL-SLGGARYFVSFIDDYSRRLW 515
Query: 1672 VYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKICQDEGIARYFTV 1851
VYP+K KS+V VF +K IE +TGKKIK LR+DNGGEY F+ C+ EGI R FTV
Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575
Query: 1852 PDTH*QNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVTYACYLINRLPSAAIEGKTPM 2031
T QNGVAERMNRTLLE+ R ML AG+ K FWAEAV ACY+INR PS AI+ KTPM
Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPM 635
Query: 2032 EVWSGKPATDYDSLHIFGCSAYFHVKD---SKLDPRAKKGLFLGLSSSVKGYRIWCPEAK 2202
E+W GKP DY SLH+FGC Y +KLDP+++K +FLG + +VKGYR+W P A+
Sbjct: 636 EMWKGKP-VDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTAR 694
Query: 2203 KTILSRDVTFNESDM 2247
K ++SRDV F E+++
Sbjct: 695 KVVVSRDVVFAENEL 709
Score = 122 bits (307), Expect(2) = e-115
Identities = 54/104 (51%), Positives = 80/104 (76%)
Frame = +3
Query: 990 SDEWILDSGCTYHICPNRDWFFSFKHLDGRAVFMSNDNTCKTKGIGTIKLKLHDGTIREL 1169
+D WI+DSG T+H+ P+RDWFFS++ + +V+M ND+ + G+GTI+LK+HDGT+R++
Sbjct: 288 NDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKI 347
Query: 1170 NDVRYVPDLKKNLISVGALES*GFKISIEAGVMKVVLGALVVIR 1301
VR+V LKKNL+SVG L+ G KI E+G++KVV G LVV++
Sbjct: 348 QGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391
Score = 102 bits (253), Expect = 1e-18
Identities = 55/193 (28%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Frame = +2
Query: 182 AKVEVEKFDGRNNFGMWQCEVLDALV*QELEIALEEKPTEMSEKDWLKLNKQACSTIRLC 361
AK E+EKF+GRN F +W+ ++ L A++ +P +++++ W +++ A + + L
Sbjct: 3 AKFEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLA 61
Query: 362 LAKDQKYFVMRETSAKTLWQKLEDKYMSKCTENRLYLKKKLFQYQYTEGMPMIDHLEGFN 541
+A + + +AK +W L Y K NR++LK++L+ + E + DH+ N
Sbjct: 62 MADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLN 121
Query: 542 RLIADLLNLDEVISDEDRELTLLNSLPDEYEHLSTTLIYGK--DKLTFEAVSSALTNNEI 715
L + L D I++ +R LL SLPD Y+ L + D L F+ V+ A+ E
Sbjct: 122 TLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEES 181
Query: 716 RKRDKQATKSTSE 754
R+++K+ +S+
Sbjct: 182 RRKNKEERSESSK 194