BLASTX nr result
ID: Cocculus23_contig00005423
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00005423
(247 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16200.3| unnamed protein product [Vitis vinifera] 87 2e-15
emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera] 87 2e-15
ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog ... 78 1e-12
gb|ACH42255.1| RAD51D protein [Triticum aestivum] 72 1e-10
ref|XP_002531104.1| DNA repair and recombination protein radB, p... 71 1e-10
gb|EXC35072.1| DNA repair protein RAD51-4-like protein [Morus no... 71 2e-10
gb|EMS53753.1| DNA repair protein RAD51-like protein 4 [Triticum... 69 5e-10
gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair prot... 69 5e-10
ref|NP_172254.2| DNA repair protein RAD51 homolog 4 [Arabidopsis... 69 5e-10
dbj|BAD34152.1| Trad-like protein [Oryza sativa Japonica Group] ... 69 5e-10
ref|NP_001077479.1| DNA repair protein RAD51 homolog 4 [Arabidop... 69 5e-10
gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana] gi... 69 5e-10
gb|EAZ08086.1| hypothetical protein OsI_30353 [Oryza sativa Indi... 69 5e-10
ref|XP_006590288.1| PREDICTED: uncharacterized protein LOC100780... 69 7e-10
ref|XP_006590287.1| PREDICTED: uncharacterized protein LOC100780... 69 7e-10
ref|NP_001242445.1| uncharacterized protein LOC100780427 [Glycin... 69 7e-10
ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog ... 68 1e-09
ref|XP_007016541.1| Tetratricopeptide repeat-like superfamily pr... 68 1e-09
ref|XP_006661024.1| PREDICTED: DNA repair protein RAD51 homolog ... 67 2e-09
ref|XP_004251314.1| PREDICTED: DNA repair protein RAD51 homolog ... 67 2e-09
>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 87.0 bits (214), Expect = 2e-15
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +1
Query: 16 KQVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLI 195
K+VK ++ EK+MS I C SVFDIF LR+QV+ +VRLL++DSISSLI
Sbjct: 218 KEVKQNILEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLI 277
Query: 196 APILGGGGAHGRSLMIS 246
PILGG G+HGR+LMIS
Sbjct: 278 TPILGGSGSHGRALMIS 294
>emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 87.0 bits (214), Expect = 2e-15
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +1
Query: 16 KQVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLI 195
K+VK ++ EK+MS I C SVFDIF LR+QV+ +VRLL++DSISSLI
Sbjct: 166 KEVKQNILEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLI 225
Query: 196 APILGGGGAHGRSLMIS 246
PILGG G+HGR+LMIS
Sbjct: 226 TPILGGSGSHGRALMIS 242
>ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog 4-like [Vitis vinifera]
Length = 326
Score = 78.2 bits (191), Expect = 1e-12
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +1
Query: 13 MKQVKHDMF-EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISS 189
+ Q+ +F E IMS I C SVFDIF LR+QV+ +VRLL++DSISS
Sbjct: 157 INQIPDTIFKEVIMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISS 216
Query: 190 LIAPILGGGGAHGRSLMIS 246
LI PILGG G+HGR+LMIS
Sbjct: 217 LITPILGGSGSHGRALMIS 235
>gb|ACH42255.1| RAD51D protein [Triticum aestivum]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +1
Query: 13 MKQVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSL 192
+K+ K +++MS+I C SVFDIF L +V N +K+ LL+IDS+SSL
Sbjct: 90 IKEPKDMRLKRVMSSIICESVFDIFALFEVLDRLEVSLNCKVTNGSNKICLLIIDSVSSL 149
Query: 193 IAPILGGGGAHGRSLMIS 246
+API+GG + GRS+MIS
Sbjct: 150 LAPIIGGKNSQGRSMMIS 167
>ref|XP_002531104.1| DNA repair and recombination protein radB, putative [Ricinus
communis] gi|223529300|gb|EEF31269.1| DNA repair and
recombination protein radB, putative [Ricinus communis]
Length = 315
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/69 (52%), Positives = 45/69 (65%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGGGG 219
+ +MSNI C SVFDIF LR+Q + D KV+ L++DSISSLI PILGGGG
Sbjct: 168 QTVMSNILCHSVFDIFSMFDVLHQLEISLRSQGHSGDFKVQSLIVDSISSLITPILGGGG 227
Query: 220 AHGRSLMIS 246
+ G +LM S
Sbjct: 228 SQGHALMTS 236
>gb|EXC35072.1| DNA repair protein RAD51-4-like protein [Morus notabilis]
Length = 359
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/73 (50%), Positives = 45/73 (61%)
Frame = +1
Query: 28 HDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPIL 207
H+ + +M NI C SVFDIF LR+Q N +VRLL++DSISSLI PIL
Sbjct: 163 HNFLQNVMKNILCHSVFDIFTMFDILHQLELDLRSQ--NGPRRVRLLIVDSISSLITPIL 220
Query: 208 GGGGAHGRSLMIS 246
GG G G SLM+S
Sbjct: 221 GGSGLQGHSLMVS 233
>gb|EMS53753.1| DNA repair protein RAD51-like protein 4 [Triticum urartu]
Length = 295
Score = 69.3 bits (168), Expect = 5e-10
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +1
Query: 19 QVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIA 198
Q K +++MS+I C SVFDIF L +V N +++ LL+IDS+SSL+A
Sbjct: 129 QPKDVRLKRVMSSIICESVFDIFALFEVLDRLEVSLNGKVTNGSNRICLLIIDSVSSLLA 188
Query: 199 PILGGGGAHGRSLMIS 246
PI+GG + GRS+MIS
Sbjct: 189 PIIGGKNSQGRSMMIS 204
>gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair protein RAD51 homolog 4 (TRAD)
from Homo sapiens gi|6174940 [Arabidopsis thaliana]
Length = 285
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGGGG 219
+K+MS I C +V+DI+ LR Q+ ++S++RLLV+DSISSLI PILGG G
Sbjct: 145 QKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSG 204
Query: 220 AHGRSLMIS 246
+ GR+LM++
Sbjct: 205 SQGRALMVA 213
>ref|NP_172254.2| DNA repair protein RAD51 homolog 4 [Arabidopsis thaliana]
gi|83305360|sp|Q9LQQ2.2|RA51D_ARATH RecName: Full=DNA
repair protein RAD51 homolog 4; Short=AtRAD51D
gi|57283103|emb|CAD70703.1| putative DNA recombination
protein [Arabidopsis thaliana]
gi|58430742|dbj|BAD89165.1| AtRAD51D [Arabidopsis
thaliana] gi|90969171|gb|ABE02570.1| RAD51D splice
variant a [Arabidopsis thaliana]
gi|90969179|gb|ABE02658.1| RAD51D splice variant a
[Arabidopsis thaliana] gi|332190052|gb|AEE28173.1| DNA
repair protein RAD51-like 4 [Arabidopsis thaliana]
Length = 322
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGGGG 219
+K+MS I C +V+DI+ LR Q+ ++S++RLLV+DSISSLI PILGG G
Sbjct: 167 QKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSG 226
Query: 220 AHGRSLMIS 246
+ GR+LM++
Sbjct: 227 SQGRALMVA 235
>dbj|BAD34152.1| Trad-like protein [Oryza sativa Japonica Group]
gi|50726165|dbj|BAD33684.1| Trad-like protein [Oryza
sativa Japonica Group] gi|125604686|gb|EAZ43722.1|
hypothetical protein OsJ_28349 [Oryza sativa Japonica
Group]
Length = 272
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +1
Query: 13 MKQVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSL 192
+++ K+ E++MS+I C SVFDIF L+++V N +K+ LL+IDSISS+
Sbjct: 126 VREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLELSLKSKVNNGGNKICLLIIDSISSI 185
Query: 193 IAPILGGGGAHGRSLMIS 246
+API GG GRS+MIS
Sbjct: 186 LAPINGGKYPRGRSMMIS 203
>ref|NP_001077479.1| DNA repair protein RAD51 homolog 4 [Arabidopsis thaliana]
gi|332190053|gb|AEE28174.1| DNA repair protein
RAD51-like 4 [Arabidopsis thaliana]
Length = 304
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGGGG 219
+K+MS I C +V+DI+ LR Q+ ++S++RLLV+DSISSLI PILGG G
Sbjct: 149 QKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSG 208
Query: 220 AHGRSLMIS 246
+ GR+LM++
Sbjct: 209 SQGRALMVA 217
>gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana]
gi|90969191|gb|ABE02664.1| RAD51D splice variant g
[Arabidopsis thaliana]
Length = 266
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGGGG 219
+K+MS I C +V+DI+ LR Q+ ++S++RLLV+DSISSLI PILGG G
Sbjct: 167 QKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSG 226
Query: 220 AHGRSLMIS 246
+ GR+LM++
Sbjct: 227 SQGRALMVA 235
>gb|EAZ08086.1| hypothetical protein OsI_30353 [Oryza sativa Indica Group]
Length = 280
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +1
Query: 13 MKQVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSL 192
+++ K+ E++MS+I C SVFDIF L+++V N +K+ LL+IDSISS+
Sbjct: 134 VREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLELSLKSKVNNGGNKICLLIIDSISSI 193
Query: 193 IAPILGGGGAHGRSLMIS 246
+API GG GRS+MIS
Sbjct: 194 LAPINGGKYPRGRSMMIS 211
>ref|XP_006590288.1| PREDICTED: uncharacterized protein LOC100780427 isoform X2 [Glycine
max]
Length = 319
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = +1
Query: 34 MFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGG 213
M +K++ I C SVFD++ LR+++ S+ VRLL++DSISSLI PILGG
Sbjct: 166 MLKKVLDRIICYSVFDVYQMFDVLHQLKINLRSEIVKSNQHVRLLIVDSISSLITPILGG 225
Query: 214 GGAHGRSLMIS 246
G G +LMIS
Sbjct: 226 SGPQGHALMIS 236
>ref|XP_006590287.1| PREDICTED: uncharacterized protein LOC100780427 isoform X1 [Glycine
max]
Length = 321
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = +1
Query: 34 MFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGG 213
M +K++ I C SVFD++ LR+++ S+ VRLL++DSISSLI PILGG
Sbjct: 172 MLKKVLDRIICYSVFDVYQMFDVLHQLKINLRSEIVKSNQHVRLLIVDSISSLITPILGG 231
Query: 214 GGAHGRSLMIS 246
G G +LMIS
Sbjct: 232 SGPQGHALMIS 242
>ref|NP_001242445.1| uncharacterized protein LOC100780427 [Glycine max]
gi|255635337|gb|ACU18022.1| unknown [Glycine max]
Length = 325
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = +1
Query: 34 MFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPILGG 213
M +K++ I C SVFD++ LR+++ S+ VRLL++DSISSLI PILGG
Sbjct: 172 MLKKVLDRIICYSVFDVYQMFDVLHQLKINLRSEIVKSNQHVRLLIVDSISSLITPILGG 231
Query: 214 GGAHGRSLMIS 246
G G +LMIS
Sbjct: 232 SGPQGHALMIS 242
>ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Cucumis
sativus] gi|449518921|ref|XP_004166484.1| PREDICTED: DNA
repair protein RAD51 homolog 4-like [Cucumis sativus]
Length = 314
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/74 (45%), Positives = 47/74 (63%)
Frame = +1
Query: 25 KHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPI 204
+ M +++M++I C SVF+IF LR+Q D +V+LL+IDSISSLI PI
Sbjct: 162 EQSMLQRVMTSISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSISSLITPI 221
Query: 205 LGGGGAHGRSLMIS 246
LGG + G +LMIS
Sbjct: 222 LGGSSSQGHALMIS 235
>ref|XP_007016541.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
gi|508786904|gb|EOY34160.1| Tetratricopeptide
repeat-like superfamily protein [Theobroma cacao]
Length = 951
Score = 67.8 bits (164), Expect = 1e-09
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 19 QVKHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIA 198
++K+ + +++MSNI C SVFDIF +LR+Q + ++RLL+IDSIS LI
Sbjct: 167 EIKNQILQRVMSNILCHSVFDIFEMFDVLHKLEYQLRSQDRGG-CQMRLLIIDSISLLIT 225
Query: 199 PILGGGGAHGRSLMIS 246
P+LGG + GR+LM+S
Sbjct: 226 PVLGGTSSQGRALMVS 241
>ref|XP_006661024.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Oryza
brachyantha]
Length = 245
Score = 67.4 bits (163), Expect = 2e-09
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +1
Query: 25 KHDMFEKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNSDSKVRLLVIDSISSLIAPI 204
K+ E+++S+I C SVFDIF L+ +V N SK+ LL+IDS+SSL+API
Sbjct: 94 KNVKLERVLSSIICKSVFDIFDLFEVLRQLELSLKNKVNNGSSKICLLIIDSLSSLLAPI 153
Query: 205 LGGGGAHGRSLMIS 246
GG GRS+MIS
Sbjct: 154 NGGKYPQGRSMMIS 167
>ref|XP_004251314.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Solanum
lycopersicum]
Length = 314
Score = 67.4 bits (163), Expect = 2e-09
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Frame = +1
Query: 40 EKIMSNIFCASVFDIFGXXXXXXXXXXKLRAQVKNS---DSKVRLLVIDSISSLIAPILG 210
+++M+NI C SVFDIF LR+Q N D +R+L+IDSISSLIAPIL
Sbjct: 166 QEVMNNIVCFSVFDIFPLFEVLHQLKNNLRSQGINDMQKDQHIRMLIIDSISSLIAPIL- 224
Query: 211 GGGAHGRSLMIS 246
GGGAHG +LM+S
Sbjct: 225 GGGAHGHALMVS 236