BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00005386
         (1944 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   600   e-168
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   599   e-168
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         598   e-168
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   597   e-168
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   597   e-168
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   596   e-167
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   596   e-167
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   593   e-166
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   590   e-166
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   590   e-166
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   587   e-165
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   587   e-165
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   587   e-165
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   587   e-165
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   586   e-164
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   580   e-163
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   580   e-163
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   577   e-162
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   577   e-162
emb|CBL87031.1| RNA polymerase [Nuphar advena]                        576   e-161

>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score =  600 bits (1546), Expect = e-168
 Identities = 326/579 (56%), Positives = 399/579 (68%), Gaps = 7/579 (1%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR ++++V SR  R  H  +   FLGF++  R          KT      CE   R N 
Sbjct: 1    MWRYISKQVYSRKLRNTHDSD---FLGFAQSFR----------KTRPLQGLCEEGYR-NP 46

Query: 409  ELLFTQEATESPNSWRFRCPFGCFESGIHR------DDVLKTRSKCGFGNPTSISVFENP 570
             L  +Q +  S  + + RC  G  E           +  + +R K  F    S+ V    
Sbjct: 47   NLGVSQSSIFSRVNGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGV---- 102

Query: 571  VRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMTRGKYQ 747
            +RS+ ++ EA               Q L+E M +E E  K   + K  K V GM  GKY 
Sbjct: 103  LRSYGSAAEAIASTSEEDIDEI---QELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN 159

Query: 748  SLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQE 927
             LRRRQ+++ETEAWE AAKEY+ELL DMC+ KLAPNLPY+K LFLGWFEPL + IAAEQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQK 219

Query: 928  LCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENE 1107
            LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGEAIE+E
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 1108 ARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQIVGRQE 1287
            ARIH+FLE                   D +KE+ +LRKKV  LMKKQKL QVR+IV +Q+
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETA---GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQD 336

Query: 1288 DSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEAKKASR 1467
            D KPWGQD  +KVG  L+ +L++TAYIQPP DQL D PPDIRPAF H+L T  +  K SR
Sbjct: 337  DEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTV-DTVKGSR 395

Query: 1468 RYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQ 1647
            RYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W+GYD+GAY FLPSYIMRTHG +QQ
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455

Query: 1648 REAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPE 1827
            REAVKR P+KQL  +F+ALDTLG TKWRVN+RVLG+ +R+WA+GGRLA LVDREDVP+PE
Sbjct: 456  REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515

Query: 1828 KPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            +PDTE+E E++KWKW+VK  KKEN ERHSQRCD ELKLA
Sbjct: 516  EPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIELKLA 554


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  599 bits (1544), Expect = e-168
 Identities = 332/584 (56%), Positives = 398/584 (68%), Gaps = 12/584 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR +++   SR  R +H     + LGFS+ S    KT   +          E+    NL
Sbjct: 1    MWRYISKHAYSRKFRNSHD---SALLGFSQYSSSFGKTRPLQCLCE------ESTTHPNL 51

Query: 409  ELLFTQEATESPNSWRFRCPFG-CFESGIHRDDVLKTRSK----------CGFGNPTSIS 555
             L  +Q +  S  S + R   G C ES  +    L   S           CG     S+ 
Sbjct: 52   GL--SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLG 109

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMT 732
                 +RS+ ++ EA               Q L+E M +E E  K   + K  K + GM 
Sbjct: 110  ----RLRSYGSAAEAIVSTSEEDIDEI---QELIEEMDKENEALKANLQPKQPKTIGGMG 162

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 163  VGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 222

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            AAEQ+LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGE
Sbjct: 223  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGE 282

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQI 1272
            AIE+EARIH+FLE                 D   +KE+ +LRKKV  LMKKQKL QVR+I
Sbjct: 283  AIEHEARIHRFLEKTKKSNALSGDLEETPGDM--MKERERLRKKVKILMKKQKLRQVRKI 340

Query: 1273 VGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEA 1452
            V +Q+D KPWGQD  +KVG  L+ +LM+TAYIQPP DQL DGPPDIRPAF H+L T  E 
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV-ET 399

Query: 1453 KKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTH 1632
             K SRRYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W GYD+G Y FLPSYIMRTH
Sbjct: 400  MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTH 459

Query: 1633 GVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRED 1812
            G +QQREAVKR P+KQL  +F+ALDTLG TKWRVNR+VLG+ +R+WA+GGRLA LVDRED
Sbjct: 460  GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDRED 519

Query: 1813 VPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            VP+PE PDTEDEAE+RKWKW+VK VKKEN ERHSQRCD ELKLA
Sbjct: 520  VPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  598 bits (1542), Expect = e-168
 Identities = 332/584 (56%), Positives = 397/584 (67%), Gaps = 12/584 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR +++   SR  R +H     + LGFS+ S    KT   +          E+    NL
Sbjct: 1    MWRYISKHAYSRKFRNSHD---SALLGFSQYSSSFGKTRPLQCLCE------ESTTHPNL 51

Query: 409  ELLFTQEATESPNSWRFRCPFG-CFESGIHRDDVLKTRSK----------CGFGNPTSIS 555
             L  +Q +  S  S + R   G C ES  +    L   S           CG     S+ 
Sbjct: 52   GL--SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLG 109

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMT 732
                 +RS+ ++ EA               Q L+E M +E E  K   + K  K + GM 
Sbjct: 110  ----RLRSYGSAAEAIVSTSEEDIDEI---QELIEEMDKENEALKANLQPKQPKTIGGMG 162

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 163  VGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 222

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            AAEQ+LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGE
Sbjct: 223  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGE 282

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQI 1272
            AIE+EARIH+FLE                 D   +KE+ +LRKKV  LMKKQKL QVR+I
Sbjct: 283  AIEHEARIHRFLEKTKKSNALSGDLEETPGDM--MKERERLRKKVKILMKKQKLRQVRKI 340

Query: 1273 VGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEA 1452
            V +Q+D KPWGQD  +KVG  L+ +LM+TAYIQPP DQL DGPPDIRPAF H+L T  E 
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV-ET 399

Query: 1453 KKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTH 1632
             K SRRYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W GYD+G Y FLPSYIMRTH
Sbjct: 400  MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTH 459

Query: 1633 GVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRED 1812
            G +QQREAVKR P+KQL  +F+ALDTLG TKWRVNR+VLG+  R+WA+GGRLA LVDRED
Sbjct: 460  GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDRED 519

Query: 1813 VPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            VP+PE PDTEDEAE+RKWKW+VK VKKEN ERHSQRCD ELKLA
Sbjct: 520  VPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  597 bits (1539), Expect = e-168
 Identities = 331/585 (56%), Positives = 393/585 (67%), Gaps = 13/585 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNP------CSFLGFSKCSRFTE--KTSHFEIKTNVDTDFC 384
            MWRN+A+  + R PR    L+        SFLGFS+   F E  K   FE  +   + F 
Sbjct: 40   MWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFS 99

Query: 385  ETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGN--PTSISV 558
            E   RR  E+   ++A   P+       FGC             R++ GF    P S + 
Sbjct: 100  EMGFRRIGEISSREDAVGRPS-------FGCL------------RNQMGFSGFCPKSYAS 140

Query: 559  FENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKGR-KLVHGMTR 735
                V S  T VE                Q LL  M +EE+     + + + K+  GM +
Sbjct: 141  VAEAVSS--TDVEEDVSASDEI-------QELLGEMKKEEKRQVNFKRREKLKMERGMEQ 191

Query: 736  GKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIA 915
            G+Y  LRRRQV+IETEAWE AAKEYKELL DMC+ KLAPNLPYMK LFLGWFEPL + I 
Sbjct: 192  GRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIV 251

Query: 916  AEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEA 1095
             EQELCR  K K AYAPY DQLPA+MMSVITMHKL+GLLMTGG+HG  RV++A+  IG+A
Sbjct: 252  KEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDA 311

Query: 1096 IENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQIV 1275
            IE E RIH FLE                     I E+ KLRKKV +LMKKQKLH  RQIV
Sbjct: 312  IEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIV 371

Query: 1276 GRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVD-QLPDGPPDIRPAFRHSLVT-SKE 1449
               ++SKPWG +A+ KVG+ L++LLMQTAYIQPPVD QL D PPDIRPAF H+  T  +E
Sbjct: 372  KGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMRE 431

Query: 1450 AKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRT 1629
            AKK  RR+GVIECDPL++KGLERT RHMVIPY+PMLVPP+ WTGYD+GA+ FLPSY+MRT
Sbjct: 432  AKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRT 491

Query: 1630 HGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRE 1809
            HG RQQREAVKRAP+ QL  +FEAL+TLG TKWR+N+R+  V +R+WA GG LA LVDR 
Sbjct: 492  HGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRN 551

Query: 1810 DVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            DVP+PEKPDTEDEA+LRKWKW+VK VKK NSERHSQRCD ELKLA
Sbjct: 552  DVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLA 596


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  597 bits (1538), Expect = e-168
 Identities = 324/579 (55%), Positives = 397/579 (68%), Gaps = 7/579 (1%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR ++++  SR  R  H  +   FLGF++             KT      CE    RN 
Sbjct: 1    MWRYISKQAYSRKLRNTHDSD---FLGFAQSFG----------KTRPLQGLCE-EIYRNP 46

Query: 409  ELLFTQEATESPNSWRFRCPFGCFESGIHR------DDVLKTRSKCGFGNPTSISVFENP 570
             L  +Q +  +  + + RC  G  E           +  + +R K  F    S+ +    
Sbjct: 47   NLGVSQSSIFTRVNGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGI---- 102

Query: 571  VRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMTRGKYQ 747
            +RS+ ++ EA               Q L+E M +E E  K   + K  K V GM  GKY 
Sbjct: 103  LRSYGSAAEAIASTSEEDIDEI---QELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN 159

Query: 748  SLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQE 927
             LRRRQ+++ETEAWE AAKEY+ELL DMC+ KLAPNLPY+K LFLGWFEPL + IAAEQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQK 219

Query: 928  LCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENE 1107
            LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGEAIE+E
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 1108 ARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQIVGRQE 1287
            ARIH+FLE                   D +KE+ +LRKKV  LMKKQKL QVR+IV +Q+
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETA---GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQD 336

Query: 1288 DSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEAKKASR 1467
            D KPWGQD  +KVG  L+ +L++TAYIQPP DQL D PPDIRPAF H+L T  E  K SR
Sbjct: 337  DEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV-ETVKGSR 395

Query: 1468 RYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQ 1647
            RYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W+GYD+GAY FLPSYIMRTHG +QQ
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455

Query: 1648 REAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPE 1827
            REAVKR P+KQL  +F+ALDTLG TKWRVN+RVLG+ +R+WA+GGRLA LVDREDVP+PE
Sbjct: 456  REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515

Query: 1828 KPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            +PDTEDE E++KWKW+VK  KKEN ERHSQRCD ELKLA
Sbjct: 516  EPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIELKLA 554


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  596 bits (1537), Expect = e-167
 Identities = 328/584 (56%), Positives = 401/584 (68%), Gaps = 12/584 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR +++   SR  R +H     + LGFS+ S    KT   +         CE +   N 
Sbjct: 1    MWRYISKHAYSRKFRNSHD---SALLGFSQYSSSFGKTRPLQC-------LCEESTT-NP 49

Query: 409  ELLFTQEATESPNSWRFRCPFG-CFES------GIHRDDVLKTRSK----CGFGNPTSIS 555
             L  +Q +  S  S + R   G C ES      G+ ++ +  +       CG     S+ 
Sbjct: 50   NLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLG 109

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMT 732
                 +RS+ ++ EA               Q L+E M +E E  K   + K  K + GM 
Sbjct: 110  F----LRSYGSAAEAIASTSEEDIDEI---QELIEEMNKENEALKTNLQPKQPKTIGGMG 162

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 163  VGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 222

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            AAEQ+LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGE
Sbjct: 223  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGE 282

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQI 1272
            AIE+EARIH+FLE                 D   +KE+ +LRKKV  LMKKQKL QVR+I
Sbjct: 283  AIEHEARIHRFLEKTKKSNALSGDLEDTPGDI--MKERERLRKKVKILMKKQKLQQVRKI 340

Query: 1273 VGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEA 1452
            V +Q+D KPWGQD  +KVG  L+ +LM+TAYIQPP DQL D PPDIRPAF H+L T  E 
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV-ET 399

Query: 1453 KKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTH 1632
             K SRRYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W GYD+GAY FLPSYIMRTH
Sbjct: 400  MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459

Query: 1633 GVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRED 1812
            G +QQREAVKR P+KQL  +F+ALDTLG TKWR+NR+VLG+ +R+WA+GGRLA LVDRED
Sbjct: 460  GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519

Query: 1813 VPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            VP+PE+PD EDEA++RKWKW+VK VKKEN ERHSQRCD ELKLA
Sbjct: 520  VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  596 bits (1536), Expect = e-167
 Identities = 327/584 (55%), Positives = 402/584 (68%), Gaps = 12/584 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR ++++  SR  R +H     + LGFS+ S    KT   +         CE +   N 
Sbjct: 1    MWRYISKQAYSRKFRNSHD---SALLGFSQYSSSFGKTRPLQC-------LCEESTT-NP 49

Query: 409  ELLFTQEATESPNSWRFRCPFG-CFES------GIHRDDVLKTRSK----CGFGNPTSIS 555
             L  +Q +  S  S + R   G C ES      G+ ++ +  +       CG     S+ 
Sbjct: 50   NLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLG 109

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMT 732
                 +RS+ ++ EA               Q L+E M +E E  K   + K  K + GM 
Sbjct: 110  F----LRSYGSAAEAIASTSEEDIDEI---QELIEEMNKENEALKTNLQPKQPKTIGGMG 162

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 163  VGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 222

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            AAEQ+LC + K +GAYAP+ DQLPAEMM+VITMHKLMGLLMTGG  G ARV++A+S IGE
Sbjct: 223  AAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGE 282

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQI 1272
            AIE+EARIH+FLE                 D   +KE+ ++RKKV  LMKKQKL QVR+I
Sbjct: 283  AIEHEARIHRFLEKTKKSNALSGDLEDTPGDI--MKERERVRKKVKILMKKQKLQQVRKI 340

Query: 1273 VGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEA 1452
            V +Q+D KPWGQD  +KVG  L+ +LM+TAYIQPP DQL D PPDIRPAF H+L T  E 
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV-ET 399

Query: 1453 KKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTH 1632
             K SRRYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W GYD+GAY FLPSYIMRTH
Sbjct: 400  MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459

Query: 1633 GVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRED 1812
            G +QQREAVKR P+KQL  +F+ALDTLG TKWR+NR+VLG+ +R+WA+GGRLA LVDRED
Sbjct: 460  GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519

Query: 1813 VPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            VP+PE+PD EDEA++RKWKW+VK VKKEN ERHSQRCD ELKLA
Sbjct: 520  VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  593 bits (1528), Expect = e-166
 Identities = 289/418 (69%), Positives = 343/418 (82%), Gaps = 4/418 (0%)
 Frame = +1

Query: 703  KGRKLVHGMTRGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFL 882
            K  KL+ G+ +GK+  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPY+K LFL
Sbjct: 127  KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFL 186

Query: 883  GWFEPLCNRIAAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRAR 1062
            GWFEPL + IAAEQ+LC++ K + AYAPY D LPA+MM+VITMHKLMGLLMTG  +G AR
Sbjct: 187  GWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSAR 246

Query: 1063 VLRASSQIGEAIENEARIHKFLEXXXXXXXXXXXXXXXXPDADD---IKEKGKLRKKVLD 1233
            V++A+  IGEAIE+E RI +F+E                PD       KE+ KLRKKV  
Sbjct: 247  VVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNN-----PDGGSNPVTKEQEKLRKKVSM 301

Query: 1234 LMKKQKLHQVRQIVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIR 1413
            LMKKQKL QVRQIV RQ+DSKPWGQDA +KVG+ L++LL++TAYIQPP DQL DGPPDIR
Sbjct: 302  LMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIR 361

Query: 1414 PAFRHSLVTS-KEAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQ 1590
            PAF H+L T  KE +K +RRYGVIECDPL+RKGLE+T RHMVIPYMPMLVPP+ WTGYD+
Sbjct: 362  PAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDK 421

Query: 1591 GAYFFLPSYIMRTHGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLW 1770
            GAY FLPSY+MR HG RQQREA+KRAP+K L   FEAL+TLG TKWR+N+RVLGV +R+W
Sbjct: 422  GAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIW 481

Query: 1771 ATGGRLAGLVDREDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            A+GGRLA LVDREDVP+PE+PDTEDEAE+RKWKW+V+ VKKENSERHSQRCD ELKLA
Sbjct: 482  ASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLA 539


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  590 bits (1521), Expect = e-166
 Identities = 322/579 (55%), Positives = 395/579 (68%), Gaps = 7/579 (1%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFS-----KCSRFTEKTSHFEIKTNVDTDFCETN 393
            MWRN++++   RN +     +P S   FS     K S F E     ++++ ++T   E  
Sbjct: 1    MWRNLSKQSYLRNFKVFSESHP-SPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELG 59

Query: 394  CRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFENPV 573
             RR   L+F +   E+       CP     S   R                    F    
Sbjct: 60   FRR--ALVFWRPPREAS------CPNYAISSHTFR--------------------FFGST 91

Query: 574  RSFATSVEAXXXXXXXXXXXXXXXQGLLENMLRE--EEDSKIGEHKGRKLVHGMTRGKYQ 747
            R +A + EA               Q L+E + +E   + +   E K  KLV GM  GKY 
Sbjct: 92   RGYAAAAEALVSTSEEEVDEL---QELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYN 148

Query: 748  SLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQE 927
            SLRRRQ++IETEAWE AAKEY+ELL+DMC+ KLAPNLPY+K LFLGWFEPL + IAAEQ+
Sbjct: 149  SLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQD 208

Query: 928  LCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENE 1107
            LC++ K +GAYAPY DQLPAEMM+VITMHKLMGLLMTGG +G ARV++A+  IGEAIE+E
Sbjct: 209  LCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHE 268

Query: 1108 ARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQIVGRQE 1287
             RIHKFL+                PD +  KE+ +LRKKV  LMKKQK+ QVR IV  Q+
Sbjct: 269  VRIHKFLDNCKRKNALNRTSEEG-PDPE-AKEQDRLRKKVKILMKKQKVQQVRNIVRHQD 326

Query: 1288 DSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEAKKASR 1467
            D KPWGQDA++KVG  L+ +L QTAYIQPPVDQ  DG PDIRPAF H+L    E  K SR
Sbjct: 327  DLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAFVHTL-KCVETLKGSR 385

Query: 1468 RYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQ 1647
            RYGVIECDPL+RKG+E+T RHMVIPYMPMLVPP+ WTGY++GAY FLPSY+MRTHG +QQ
Sbjct: 386  RYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQ 445

Query: 1648 REAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPE 1827
            REAVKR P+++L  IF+AL+TLG TKWRVN+R+L V +R+WA GGRLA LVDRED+P+PE
Sbjct: 446  REAVKRTPKQELEPIFQALNTLGNTKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPE 505

Query: 1828 KPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            +PDTEDEAE++KWKW+VK VKK NSERHSQRCD ELKLA
Sbjct: 506  EPDTEDEAEIKKWKWKVKAVKKVNSERHSQRCDIELKLA 544


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score =  590 bits (1521), Expect = e-166
 Identities = 325/584 (55%), Positives = 400/584 (68%), Gaps = 12/584 (2%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCRRNL 408
            MWR ++++  SR  R +H     + LGFS+ S    KT   +         CE +   N 
Sbjct: 1    MWRYISKQAYSRKFRNSHD---SALLGFSQYSSSFGKTRPLQC-------LCEESTT-NP 49

Query: 409  ELLFTQEATESPNSWRFRCPFG-CFES------GIHRDDVLKTRSK----CGFGNPTSIS 555
             L  +Q +  S  S + R   G C ES      G+ ++ +  +       CG     S+ 
Sbjct: 50   NLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLG 109

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIG-EHKGRKLVHGMT 732
                 +RS+ ++ EA               Q L+E M +E E  K   + K  K + GM 
Sbjct: 110  F----LRSYGSAAEAIASTSEEDTDEI---QELIEEMNKENEALKTNLQPKQPKTIGGMG 162

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 163  VGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 222

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            AAEQ+LC + K +GA AP+ DQLPAEMM+VITMHKLMG LMTGG  G ARV++A+S IGE
Sbjct: 223  AAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGE 282

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKGKLRKKVLDLMKKQKLHQVRQI 1272
            AIE+EARIH+FLE                 D   +KE+ ++RKKV  LMKKQKL QVR+I
Sbjct: 283  AIEHEARIHRFLEKTKKSNALSGDLEDTPGDI--MKERERVRKKVKILMKKQKLQQVRKI 340

Query: 1273 VGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVTSKEA 1452
            V +Q+D KPWGQD  +KVG  L+ +LM+TAYIQPP DQL D PPDIRPAF H+L T  E 
Sbjct: 341  VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV-ET 399

Query: 1453 KKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTH 1632
             K SRRYGVI+CDPL+RKGL++T RHMVIPYMPMLVPP  W GYD+GAY FLPSYIMRTH
Sbjct: 400  MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459

Query: 1633 GVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDRED 1812
            G +QQREAVKR P+KQL  +F+ALDTLG TKWR+NR+VLG+ +R+WA+GGRLA LVDRED
Sbjct: 460  GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519

Query: 1813 VPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            VP+PE+PD EDEA++RKWKW+VK VKKEN ERHSQRCD ELKLA
Sbjct: 520  VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLA 563


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  587 bits (1514), Expect = e-165
 Identities = 328/586 (55%), Positives = 398/586 (67%), Gaps = 6/586 (1%)
 Frame = +1

Query: 205  SRKEETSQMWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFC 384
            S ++ +S MWRNVA++ +S + +   +    SFLG S+ S   EK   F     V     
Sbjct: 39   SPEKISSVMWRNVAKQAISLHLKKPFS-RAYSFLGISQDSILREKVK-FGCLDMVPRGIH 96

Query: 385  ETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFE 564
            E    R  E+L  ++       +  R  FG          VLK  +   F  P   +   
Sbjct: 97   EVGSGRIGEILNHED-------YMGRTSFG----------VLKNDN---FWCPRGYATVA 136

Query: 565  NPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKG----RKLVHGMT 732
              V S  T VE                Q LL+ M +EE+  + GE+ G    R++  GM 
Sbjct: 137  EAVSS--TDVEEDVSIVEEI-------QELLQEMKKEEQ--REGENGGGRNRRRVARGMG 185

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY+ L+ RQV+IETEAWEQAA EY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 186  SGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            A EQE CR  K K AYAPY DQLPA+MM+VITMHKLMGLLMTGG+HGRARV++A+  IG+
Sbjct: 246  AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIK-EKGKLRKKVLDLMKKQKLHQVRQ 1269
            AIE E RIHKFLE                 +++ +  E+ KLRKKV DL+KKQKL  VR+
Sbjct: 306  AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365

Query: 1270 IVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SK 1446
            IV  Q+D KPWGQDAR KVG+ +++LL QTAYIQ P DQL D PPDI PAF H+L T SK
Sbjct: 366  IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSK 425

Query: 1447 EAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMR 1626
            E K  S++YGVIEC+PL+ KGLERT RHMVIPYMPMLVPPV WTGYD+GA+FFLPSY+MR
Sbjct: 426  ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485

Query: 1627 THGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDR 1806
            THG +QQR+ VKR P+KQL  +FEALDTLG TKWRVN RVL V +R+W+ GGRLA LVDR
Sbjct: 486  THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545

Query: 1807 EDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
             DVP+PEKP+TEDEA+LRKW+W+V+ VKKEN ERHSQRCD ELKL+
Sbjct: 546  NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  587 bits (1514), Expect = e-165
 Identities = 328/586 (55%), Positives = 398/586 (67%), Gaps = 6/586 (1%)
 Frame = +1

Query: 205  SRKEETSQMWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFC 384
            S ++ +S MWRNVA++ +S + +   +    SFLG S+ S   EK   F     V     
Sbjct: 39   SPEKISSVMWRNVAKQAISLHLKKPFS-RAYSFLGISQDSILREKVK-FGCLDMVPRGIH 96

Query: 385  ETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFE 564
            E    R  E+L  ++       +  R  FG          VLK  +   F  P   +   
Sbjct: 97   EVGSGRIGEILNHED-------YMGRTSFG----------VLKNDN---FWCPRGYATVA 136

Query: 565  NPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKG----RKLVHGMT 732
              V S  T VE                Q LL+ M +EE+  + GE+ G    R++  GM 
Sbjct: 137  EAVSS--TDVEEDVSIVEEI-------QELLQEMKKEEQ--REGENGGGRNRRRVARGMG 185

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY+ L+ RQV+IETEAWEQAA EY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 186  SGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            A EQE CR  K K AYAPY DQLPA+MM+VITMHKLMGLLMTGG+HGRARV++A+  IG+
Sbjct: 246  AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIK-EKGKLRKKVLDLMKKQKLHQVRQ 1269
            AIE E RIHKFLE                 +++ +  E+ KLRKKV DL+KKQKL  VR+
Sbjct: 306  AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365

Query: 1270 IVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SK 1446
            IV  Q+D KPWGQDAR KVG+ +++LL QTAYIQ P DQL D PPDI PAF H+L T SK
Sbjct: 366  IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSK 425

Query: 1447 EAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMR 1626
            E K  S++YGVIEC+PL+ KGLERT RHMVIPYMPMLVPPV WTGYD+GA+FFLPSY+MR
Sbjct: 426  ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485

Query: 1627 THGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDR 1806
            THG +QQR+ VKR P+KQL  +FEALDTLG TKWRVN RVL V +R+W+ GGRLA LVDR
Sbjct: 486  THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545

Query: 1807 EDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
             DVP+PEKP+TEDEA+LRKW+W+V+ VKKEN ERHSQRCD ELKL+
Sbjct: 546  NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  587 bits (1514), Expect = e-165
 Identities = 328/586 (55%), Positives = 398/586 (67%), Gaps = 6/586 (1%)
 Frame = +1

Query: 205  SRKEETSQMWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFC 384
            S ++ +S MWRNVA++ +S + +   +    SFLG S+ S   EK   F     V     
Sbjct: 39   SPEKISSVMWRNVAKQAISLHLKKPFS-RAYSFLGISQDSILREKVK-FGCLDMVPRGIH 96

Query: 385  ETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFE 564
            E    R  E+L  ++       +  R  FG          VLK  +   F  P   +   
Sbjct: 97   EVGSGRIGEILNHED-------YMGRTSFG----------VLKNDN---FWCPRGYATVA 136

Query: 565  NPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKG----RKLVHGMT 732
              V S  T VE                Q LL+ M +EE+  + GE+ G    R++  GM 
Sbjct: 137  EAVSS--TDVEEDVSIVEEI-------QELLQEMKKEEQ--REGENGGGRNRRRVARGMG 185

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
             GKY+ L+ RQV+IETEAWEQAA EY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + I
Sbjct: 186  SGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 245

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            A EQE CR  K K AYAPY DQLPA+MM+VITMHKLMGLLMTGG+HGRARV++A+  IG+
Sbjct: 246  AKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGD 305

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIK-EKGKLRKKVLDLMKKQKLHQVRQ 1269
            AIE E RIHKFLE                 +++ +  E+ KLRKKV DL+KKQKL  VR+
Sbjct: 306  AIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRR 365

Query: 1270 IVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SK 1446
            IV  Q+D KPWGQDAR KVG+ +++LL QTAYIQ P DQL D PPDI PAF H+L T SK
Sbjct: 366  IVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSK 425

Query: 1447 EAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMR 1626
            E K  S++YGVIEC+PL+ KGLERT RHMVIPYMPMLVPPV WTGYD+GA+FFLPSY+MR
Sbjct: 426  ETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMR 485

Query: 1627 THGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDR 1806
            THG +QQR+ VKR P+KQL  +FEALDTLG TKWRVN RVL V +R+W+ GGRLA LVDR
Sbjct: 486  THGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDR 545

Query: 1807 EDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
             DVP+PEKP+TEDEA+LRKW+W+V+ VKKEN ERHSQRCD ELKL+
Sbjct: 546  NDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 591


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  587 bits (1512), Expect = e-165
 Identities = 325/606 (53%), Positives = 393/606 (64%), Gaps = 8/606 (1%)
 Frame = +1

Query: 151  SNNFGFIIHTVQINYSQFSRKEETSQMWRNVAQEVLSRNPRFAHTLNPCSF------LGF 312
            S NF F  H+  I +   S    T  +WRN A++ +SR  RF   +N  SF      LG 
Sbjct: 14   SKNFTF--HSPLIFHKNPSMISTT--VWRNFAKQAISRKQRFH--INSQSFSRAYSLLGI 67

Query: 313  SKCSRFTEKTSHFEIKTNVDTDFCETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGI 492
             + S F      FE+ +     F E   R    +   ++    P+ W  R P        
Sbjct: 68   CQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSFWSVRNPIWFN---- 123

Query: 493  HRDDVLKTRSKCGFGNPTSISVFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENM-L 669
                        GF      SV E      +T VE                Q LL+ M +
Sbjct: 124  ------------GFCPKGYASVAE---AVSSTDVEEEVSVVDEV-------QELLQQMSI 161

Query: 670  REEEDSKIGEHKGRKLVHGMTRGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLA 849
             E+ +++  +   +    GM +GKY  L+RRQ++IETEAWE+AAKEY+EL+ DMC+ KLA
Sbjct: 162  EEKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLA 221

Query: 850  PNLPYMKLLFLGWFEPLCNRIAAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGL 1029
            PNLPYMK LFLGWFEPL N I  EQ+LCRK K K AYAPY+DQLPA+MMSVITMHKLMGL
Sbjct: 222  PNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGL 281

Query: 1030 LMTGGDHGRARVLRASSQIGEAIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDIKEKG 1209
            LMTGG+HG  RV+ A+  IGEAIE E RIHKFLE                  A   KE+ 
Sbjct: 282  LMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDAAK--KERE 339

Query: 1210 KLRKKVLDLMKKQKLHQVRQIVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQL 1389
            KL KKV +LMKKQKL  VR IV + + SK W  +AR KVG+ L++LL QTA+IQPP DQL
Sbjct: 340  KLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQL 399

Query: 1390 PDGPPDIRPAFRHSLVT-SKEAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPP 1566
             DGPPDIRPAF H+  T +K+AK ASRRYGVIECDPL+ KGLE+T RHMVIPYMPMLVPP
Sbjct: 400  ADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPP 459

Query: 1567 VGWTGYDQGAYFFLPSYIMRTHGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRV 1746
            + WTGYD+G YFFLPSY+MR HG RQQREA+KR P++QL  +F+ALD LG T+WRVN+RV
Sbjct: 460  LNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRV 519

Query: 1747 LGVTERLWATGGRLAGLVDREDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCD 1926
            L V +R+WA+GG LA LVDR DVP+PE+PDTEDE  L+KWKW+VK VKKEN ERHSQRCD
Sbjct: 520  LSVVDRIWASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCD 579

Query: 1927 TELKLA 1944
            TELKLA
Sbjct: 580  TELKLA 585


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  586 bits (1510), Expect = e-164
 Identities = 324/582 (55%), Positives = 394/582 (67%), Gaps = 2/582 (0%)
 Frame = +1

Query: 205  SRKEETSQMWRNVAQEVLSRNPRFAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFC 384
            S ++ +S MWRNVA++ +S + +   +    SFLG S+ S   EK   F     V     
Sbjct: 39   SPEKISSVMWRNVAKQAISLHLKKPFS-RAYSFLGISQDSILREKVK-FGCLDMVPRGIH 96

Query: 385  ETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFE 564
            E    R  E+L  ++       +  R  FG          VLK  +   F  P   +   
Sbjct: 97   EVGSGRIGEILNHED-------YMGRTSFG----------VLKNDN---FWCPRGYATVA 136

Query: 565  NPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKGRKLVHGMTRGKY 744
              V S  T VE                Q LL+ M +E++    G    R++  GM  GKY
Sbjct: 137  EAVSS--TDVEEDVSIVEEI-------QELLQEMKKEQQSG--GGRNRRRVARGMGSGKY 185

Query: 745  QSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQ 924
            + L+ RQV+IETEAWE+AA EY+ELL DMC+ KLAPNLPYMK LFLGWFEPL + IA EQ
Sbjct: 186  RMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 245

Query: 925  ELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIEN 1104
            E CR  K K AYAPY DQLPA+MM+VITMHKLMGLLMTGG+HGRARV++A+  IG+AIE 
Sbjct: 246  ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQ 305

Query: 1105 EARIHKFLEXXXXXXXXXXXXXXXXPDADDIK-EKGKLRKKVLDLMKKQKLHQVRQIVGR 1281
            E RIHKFLE                 +++ +  E+ KLRKKV DL+KKQKL  VR+IV  
Sbjct: 306  EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 365

Query: 1282 QEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SKEAKK 1458
            Q+D KPWGQDAR KVG+ +++LL QTAYIQ P DQL D PPDI PAF H+L T SKE K 
Sbjct: 366  QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKG 425

Query: 1459 ASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGV 1638
             S++YGVIEC+PL+ KGLERT RHMVIPYMPMLVPPV WTGYD+GA+FFLPSY+MRTHG 
Sbjct: 426  GSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 485

Query: 1639 RQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVP 1818
            +QQR+ VKR P+KQL  +FEALDTLG TKWRVN RVL V +R+W+ GGRLA LVDR DVP
Sbjct: 486  KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 545

Query: 1819 VPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            +PEKP+TEDEA+LRKW+W+V+ VKKEN ERHSQRCD ELKL+
Sbjct: 546  LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLS 587


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  580 bits (1496), Expect = e-163
 Identities = 317/586 (54%), Positives = 390/586 (66%), Gaps = 6/586 (1%)
 Frame = +1

Query: 205  SRKEETSQMWRNVAQEVLSRNPR---FAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDT 375
            +R   +  MWRN+ +++ SR P+   F+      SFLGF + S F + T    +      
Sbjct: 27   NRYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSL------ 80

Query: 376  DFCETNCRRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSIS 555
                 +C  N+ + F       P       P    ++ ++ +D    +S        ++S
Sbjct: 81   --IPISCS-NIVMGFQNLGEYLPGDEFLSRPL--LKNQVNSNDFCCRKSYASVAEAVAVS 135

Query: 556  VFENPVRSFATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDS-KIGEHKGRKLVHGMT 732
                     +T  E                Q LL  + +EE+        K R L  GM 
Sbjct: 136  ---------STDAEEDVSVVDEV-------QELLTELKKEEKKQFAFRRRKQRMLTSGMG 179

Query: 733  RGKYQSLRRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRI 912
              KYQ+L+RRQV++ETEAWEQAAKEYKELL DMC+ KLAPNLPY+K LFLGWFEPL ++I
Sbjct: 180  HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 239

Query: 913  AAEQELCRKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGE 1092
            A EQELC + K K AYA YL QLPA+MM+VITMHKLMGLLMTGGDHG ARV++A+  IG+
Sbjct: 240  AEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGD 299

Query: 1093 AIENEARIHKFLEXXXXXXXXXXXXXXXXPDADDI-KEKGKLRKKVLDLMKKQKLHQVRQ 1269
            AIE E RIH FLE                 D + + +E+ KLRKKV +LMKKQKL  V Q
Sbjct: 300  AIEQEVRIHNFLEKTKKQKAEKDKQKE---DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQ 356

Query: 1270 IVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SK 1446
            IV RQ+DSKPWGQDA+ KVG+ L++LL+QTAYIQPP +QL   PPDIRPAF HS+ T +K
Sbjct: 357  IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416

Query: 1447 EAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMR 1626
            E K ASRRYG+I+CD L+ KGLERT RHMVIPYMPMLVPPV WTGYD+G + +LPSY+MR
Sbjct: 417  ETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 476

Query: 1627 THGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDR 1806
            THG RQQREAVKRA + QL  +FEALDTLG TKWR+N+RVL V +R+WA GGRLA LVDR
Sbjct: 477  THGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDR 536

Query: 1807 EDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            +D P+PE+PDTEDEA   KW+W+VK VKKEN ERHSQRCD ELKLA
Sbjct: 537  DDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLA 582


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  580 bits (1495), Expect = e-163
 Identities = 309/596 (51%), Positives = 398/596 (66%), Gaps = 24/596 (4%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPRFA---HTLNPCSF-LGFSKCSRFTEKTSHFEIKTNVDTDFCETNC 396
            MWRN+A++V SR    +   H  +P S  + FS+ S F +K  HFE +  ++        
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 397  RRNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFENPVR 576
            R+  ++   +E     +S     P+G                         IS F N  +
Sbjct: 61   RQVGDMASQKEELGRCSSLNPSYPYG-------------------------ISGFCNYAK 95

Query: 577  SFATSVEAXXXXXXXXXXXXXXX-QGLLENMLREEEDSKIGEHKGRKLVHGMTRGKYQSL 753
             +A+  EA                Q +LE+++RE    +    + +++V GM  GKY  L
Sbjct: 96   GYASVAEAIASTDGEEDSSGSEEIQEMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLL 155

Query: 754  RRRQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQELC 933
            R+RQ+++ETEAW++AAKEY+ELL DMC+ KLAPNLPY+K LFLGWFEPL + IAA+Q+ C
Sbjct: 156  RKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSC 215

Query: 934  RKRKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMT-GGDHGRARVLRASSQIGEAIENEA 1110
            ++   + ++APY D LPA+ M+VITMHKLMGLLMT  G  G  RV++A+  IGEAIE+E 
Sbjct: 216  KQPNSRQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEV 275

Query: 1111 RIHKFLEXXXXXXXXXXXXXXXXPDADDI-----------------KEKGKLRKKVLDLM 1239
            RIH+FLE                 +AD +                 KE+ +LRKKV  L+
Sbjct: 276  RIHRFLE----KTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLI 331

Query: 1240 KKQKLHQVRQIVGRQEDSKPWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPA 1419
            K+QK+ QVR IV  QED KPWGQ+A +KVG  L+ LLM TAYIQPPVDQ+ DGPPDIRPA
Sbjct: 332  KRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPA 391

Query: 1420 FRHSLVT-SKEAKKASRRYGVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGA 1596
            F H+L T +++ +K SRRYGVIECDP++RKG+E+T RHMV+PYMPMLVPP+ WTGYD+GA
Sbjct: 392  FVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGA 451

Query: 1597 YFFLPSYIMRTHGVRQQREAVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWAT 1776
            Y FLPSY+MRTHG +QQRE VKR P+KQL  +FEALDTLG TKWRVN+RVLGV +R+WA+
Sbjct: 452  YLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWAS 511

Query: 1777 GGRLAGLVDREDVPVPEKPDTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            GGRLA LVDREDVP+PE+PDTEDEAE+RKWKW++K  KKENSERHSQRCD ELKLA
Sbjct: 512  GGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLA 567


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  577 bits (1488), Expect = e-162
 Identities = 316/577 (54%), Positives = 380/577 (65%), Gaps = 5/577 (0%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPR---FAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCR 399
            MWRN+ +++ SR P+   F+      SFLGF + S F + T    +           +C 
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSL--------IPISCS 86

Query: 400  RNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFENPVRS 579
             N+ + F       P       P            ++K +    F    S +     V  
Sbjct: 87   -NIVMGFQNLGEYLPGDEFLSRP------------LIKNQVNNNFCCRKSYASVAEAVAV 133

Query: 580  FATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKGRKLVHGMTRGKYQSLRR 759
             +T  E                  L E    E++       K R L  GM   KYQ+L+R
Sbjct: 134  SSTDAEEDVSVVDEVHEL------LTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKR 187

Query: 760  RQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQELCRK 939
            RQV++ETEAWEQAAKEYKELL DMC+ KLAPNLPY+K LFLGWFEPL ++IA EQELC +
Sbjct: 188  RQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQ 247

Query: 940  RKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENEARIH 1119
             K K AYA Y  QLPA+MM+VITMHKLMGLLMTGGDHG ARV++A+  IG+AIE E RIH
Sbjct: 248  GKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIH 307

Query: 1120 KFLEXXXXXXXXXXXXXXXXPDADDI-KEKGKLRKKVLDLMKKQKLHQVRQIVGRQEDSK 1296
             FLE                 D + + +E+ KLRKKV +LMKKQKL  V QIV RQ+DSK
Sbjct: 308  NFLEKTKKQKAEKDKQKE---DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSK 364

Query: 1297 PWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SKEAKKASRRY 1473
            PWGQDAR KVG+ L+DLL+QTAYIQPP +QL   PPDIRPAF HS+ T +KE K ASRRY
Sbjct: 365  PWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRY 424

Query: 1474 GVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQRE 1653
            G+I+CD L+ KGLERT RHMVIPYMPMLVPPV WTGYD+G + +LPSY+MRTHG RQQRE
Sbjct: 425  GIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQRE 484

Query: 1654 AVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPEKP 1833
            AVKRA + QL  +FEALDTLG TKWR+N+RVL V +R+WA GGRLA LVDR+D P+PE+P
Sbjct: 485  AVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEP 544

Query: 1834 DTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            DTEDEA   KW+W+VK VKKEN ERHSQRCD ELKLA
Sbjct: 545  DTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLA 581


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  577 bits (1486), Expect = e-162
 Identities = 316/577 (54%), Positives = 380/577 (65%), Gaps = 5/577 (0%)
 Frame = +1

Query: 229  MWRNVAQEVLSRNPR---FAHTLNPCSFLGFSKCSRFTEKTSHFEIKTNVDTDFCETNCR 399
            MWRN+ +++ SR P+   F+      SFLGF + S F + T    +           +C 
Sbjct: 35   MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSL--------IPISCS 86

Query: 400  RNLELLFTQEATESPNSWRFRCPFGCFESGIHRDDVLKTRSKCGFGNPTSISVFENPVRS 579
             N+ + F       P       P            ++K +    F    S +     V  
Sbjct: 87   -NIVMGFQNLGEYLPGDEFLSRP------------LIKNQVNNNFCCRKSYASVAEAVAV 133

Query: 580  FATSVEAXXXXXXXXXXXXXXXQGLLENMLREEEDSKIGEHKGRKLVHGMTRGKYQSLRR 759
             +T  E                  L E    E++       K R L  GM   KYQ+L+R
Sbjct: 134  SSTDAEEDVSVVDEVHEL------LTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKR 187

Query: 760  RQVRIETEAWEQAAKEYKELLDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQELCRK 939
            RQV++ETEAWEQAAKEYKELL DMC+ KLAPNLPY+K LFLGWFEPL ++IA EQELC +
Sbjct: 188  RQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQ 247

Query: 940  RKQKGAYAPYLDQLPAEMMSVITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENEARIH 1119
             K K AYA Y  QLPA+MM+VITMHKLMGLLMTGGDHG ARV++A+  IG+AIE E RIH
Sbjct: 248  GKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIH 307

Query: 1120 KFLEXXXXXXXXXXXXXXXXPDADDI-KEKGKLRKKVLDLMKKQKLHQVRQIVGRQEDSK 1296
             FLE                 D + + +E+ KLRKKV +LMKKQKL  V QIV RQ+DSK
Sbjct: 308  NFLEKTKKQKAEKDKQKE---DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSK 364

Query: 1297 PWGQDARIKVGTHLLDLLMQTAYIQPPVDQLPDGPPDIRPAFRHSLVT-SKEAKKASRRY 1473
            PWGQDAR KVG+ L+DLL+QTAYIQPP +QL   PPDI PAF HS+ T +KE K ASRRY
Sbjct: 365  PWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRY 424

Query: 1474 GVIECDPLIRKGLERTVRHMVIPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQRE 1653
            G+I+CD L+ KGLERT RHMVIPYMPMLVPPV WTGYD+G + +LPSY+MRTHG RQQRE
Sbjct: 425  GIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQRE 484

Query: 1654 AVKRAPQKQLSSIFEALDTLGGTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPEKP 1833
            AVKRA + QL  +FEALDTLG TKWR+N+RVL V +R+WA GGRLA LVDR+D P+PE+P
Sbjct: 485  AVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEP 544

Query: 1834 DTEDEAELRKWKWQVKFVKKENSERHSQRCDTELKLA 1944
            DTEDEA L KW+W+VK VKKEN ERHSQRCD ELKLA
Sbjct: 545  DTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLA 581


>emb|CBL87031.1| RNA polymerase [Nuphar advena]
          Length = 990

 Score =  576 bits (1485), Expect = e-161
 Identities = 286/436 (65%), Positives = 341/436 (78%), Gaps = 3/436 (0%)
 Frame = +1

Query: 646  QGLLENMLREEEDSKIGEHKGRKLVHGMTRG--KYQSLRRRQVRIETEAWEQAAKEYKEL 819
            +GL+E    E    K GE +G++       G  KY +L+RRQ++IETEAWEQAAKEYKEL
Sbjct: 125  KGLVERFSEEVFKEKEGEFRGKRRTKFGNLGYAKYNALKRRQIKIETEAWEQAAKEYKEL 184

Query: 820  LDDMCKNKLAPNLPYMKLLFLGWFEPLCNRIAAEQELCRKRKQKGAYAPYLDQLPAEMMS 999
            + DMCKNKLA NLPY+K LFLGWFEPL +RIA+EQE CR+ K + AY PYL++LPAEMM+
Sbjct: 185  MMDMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQEACRRGKCRAAYGPYLNRLPAEMMA 244

Query: 1000 VITMHKLMGLLMTGGDHGRARVLRASSQIGEAIENEARIHKFLEXXXXXXXXXXXXXXXX 1179
            VITMHKL+GL+MT GDHG ARV++A+ +IG+AIENE+RIH FLE                
Sbjct: 245  VITMHKLVGLMMTSGDHGCARVVQAACRIGDAIENESRIHSFLEKTKKKHARGNMAEEEP 304

Query: 1180 PDADDIKEKGKLRKKVLDLMKKQKLHQVRQIVGRQEDSKPWGQDARIKVGTHLLDLLMQT 1359
                  KEK  LRKKV +L+KKQKL QV ++V  ++DS PWG +A  KVG HL++LL++T
Sbjct: 305  ETVT--KEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIET 362

Query: 1360 AYIQPPVDQLPDGPPDIRPAFRHSLVT-SKEAKKASRRYGVIECDPLIRKGLERTVRHMV 1536
            AYIQPP+DQ  DGPPDIRPAFRHSL   SKE    SRRYGVIECDPL+RKGL++T RH V
Sbjct: 363  AYIQPPLDQTVDGPPDIRPAFRHSLRNVSKEQSSNSRRYGVIECDPLVRKGLDKTARHTV 422

Query: 1537 IPYMPMLVPPVGWTGYDQGAYFFLPSYIMRTHGVRQQREAVKRAPQKQLSSIFEALDTLG 1716
            IPYMPMLVPP+ WTGYD+GA+ FLPSYIMRTHG RQQREAVKR P +QL SIFEALDTLG
Sbjct: 423  IPYMPMLVPPLCWTGYDKGAHLFLPSYIMRTHGSRQQREAVKRTPTQQLQSIFEALDTLG 482

Query: 1717 GTKWRVNRRVLGVTERLWATGGRLAGLVDREDVPVPEKPDTEDEAELRKWKWQVKFVKKE 1896
             TKWR+N+R+L V ER+WA+GG LAGLVD ED P+PEKPDTEDEA LRKWKW ++  KKE
Sbjct: 483  STKWRINKRLLAVVERIWASGGNLAGLVDCEDAPLPEKPDTEDEAVLRKWKWSLRNTKKE 542

Query: 1897 NSERHSQRCDTELKLA 1944
            NSE+HSQRCD ELKL+
Sbjct: 543  NSEKHSQRCDVELKLS 558