BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00005295
         (2876 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006828672.1| hypothetical protein AMTR_s04653p00000520, p...   223   3e-55
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...   215   1e-52
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...   214   2e-52
ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608...   210   3e-51
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   203   4e-49
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...   200   4e-48
ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617...   199   5e-48
gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]            196   7e-47
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               193   4e-46
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...   192   7e-46
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   181   2e-42
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             173   5e-40
ref|XP_006494926.1| PREDICTED: uncharacterized protein LOC102618...   172   6e-40
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap...   167   3e-38
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc...   167   3e-38
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     165   1e-37
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa Japonica Group]         154   2e-34
emb|CAH68043.1| OSIGBa0139N19-OSIGBa0137L10.12 [Oryza sativa Ind...   154   3e-34
ref|XP_004964144.1| PREDICTED: uncharacterized protein LOC101778...   149   5e-33
gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subc...   140   4e-30

>ref|XP_006828672.1| hypothetical protein AMTR_s04653p00000520, partial [Amborella
            trichopoda] gi|548833479|gb|ERM96088.1| hypothetical
            protein AMTR_s04653p00000520, partial [Amborella
            trichopoda]
          Length = 563

 Score =  223 bits (569), Expect = 3e-55
 Identities = 133/336 (39%), Positives = 189/336 (56%), Gaps = 10/336 (2%)
 Frame = +2

Query: 1820 RAHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQA 1999
            R  K+ ++    I F+E +AR V HPH DALV+  ++    VHRILVDNGSS N+L FQA
Sbjct: 245  RPEKLFKRECEDIVFMESDARWVHHPHSDALVIVANIGGDNVHRILVDNGSSVNLLNFQA 304

Query: 2000 YEQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSH 2179
            ++Q+GL +  L P+ + + GF GD I  +G + LP+T+G    T   M D  V+   +++
Sbjct: 305  FKQMGLQEKDLRPMTSSIYGFTGDVIAIKGMIKLPITLGTAPITAKSMADFAVIDQYSAY 364

Query: 2180 NAIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKV--------V 2335
            NA++GR  L ++K V S YHL  KFPT  GVG VRG Q  +RECY   +K          
Sbjct: 365  NAVIGRPILKEMKIVTSIYHLTMKFPTPSGVGSVRGVQSDSRECYNAAVKARRKKDGECY 424

Query: 2336 PCITRTYQISAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPR--EDTINQQAAEEV 2509
            P   RT            Q +G  A +            + DLDPR  + T   QAAE+ 
Sbjct: 425  PPFGRTTTSPG-----DPQDRGGTALD------------KPDLDPRILDHTAAAQAAEDT 467

Query: 2510 KEIQLTDGDETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNV 2689
             E+ +   D  K +KIGS+L+  L +QL++ LK+  D+FAW H DM+ I+  V+ H+LN+
Sbjct: 468  IEVPIDPIDNNKVLKIGSRLNIQLREQLTTFLKQNLDIFAWKHSDMVGISPQVMCHRLNI 527

Query: 2690 DPHYKPIK*KMRIIGLERDEALKEEVTKLNKAGLIR 2797
            DP  + ++ K R +   R +ALKEEV +L   G IR
Sbjct: 528  DPEVRGVRQKRRKMDPARYQALKEEVDRLLACGFIR 563


>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score =  215 bits (547), Expect = 1e-52
 Identities = 128/352 (36%), Positives = 190/352 (53%), Gaps = 2/352 (0%)
 Frame = +2

Query: 1823 AHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAY 2002
            A K  +    PI + E +   +++PH DALV+   V +  + RILVD GSS +ILF  A 
Sbjct: 600  AAKRAKVRQVPIMWTENDEEGILYPHEDALVIKALVASTELRRILVDTGSSVDILFKSAL 659

Query: 2003 EQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHN 2182
            + +G+S   L    T L GF G  + P G + LP+T+G   +  T+M+D +VV+  + + 
Sbjct: 660  DDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFERTMMLDFVVVEERSPYQ 719

Query: 2183 AIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQI 2362
             I+GR F+   + V+ST++LA K+     VGVV+G Q   R CY T  K       T Q+
Sbjct: 720  MILGRPFMRISQCVISTHYLALKYRINGVVGVVKGDQRMARSCYATAAK------ETLQV 773

Query: 2363 SAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTIN--QQAAEEVKEIQLTDGD 2536
            ++                               LD R D+ N  Q+  E++KE+ ++  D
Sbjct: 774  TS-------------------------------LDNRGDSKNGRQEPVEKLKEVVVSRSD 802

Query: 2537 ETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK* 2716
             +K VK+GS+L   +  +L   L+ + D+FAW H+DM  I+  +  HKL V    +P++ 
Sbjct: 803  PSKVVKVGSELGEAIKGELVKCLQSHADIFAWSHEDMPGIDRGIACHKLAVKRGARPVRQ 862

Query: 2717 KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K R    ER EA+  EV KL KAG IRE  YP+ ++NVV+VKK+NGKWR CV
Sbjct: 863  KRRCFNHERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCV 914


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score =  214 bits (545), Expect = 2e-52
 Identities = 128/352 (36%), Positives = 191/352 (54%), Gaps = 2/352 (0%)
 Frame = +2

Query: 1823 AHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAY 2002
            A K  R    PI + E++   +++PH DALV+   V +  + RILVD GSS +ILF  A 
Sbjct: 433  AAKKARVRQVPIMWTEDDEEGILYPHEDALVIKALVASTELRRILVDTGSSVDILFKSAL 492

Query: 2003 EQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHN 2182
            + +G+S   L    T L GF G  + P G + LP+T+G   +  T+M+D +VV+  + + 
Sbjct: 493  DDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFERTMMLDFVVVEERSPYQ 552

Query: 2183 AIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQI 2362
             I+GR F+   + V+ST++LA K+     VGVV+G Q   R CY T  K       T Q+
Sbjct: 553  MILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMARSCYATAAK------ETLQV 606

Query: 2363 SAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTIN--QQAAEEVKEIQLTDGD 2536
            ++                               LD R D+ N  Q+  E+++E+ ++  D
Sbjct: 607  TS-------------------------------LDNRGDSKNGRQEPVEKLEEVVISRSD 635

Query: 2537 ETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK* 2716
             ++ VK+GS+L   +  +L   L+ + DVFAW H+DM  I+  +  HKL V    +P++ 
Sbjct: 636  PSRVVKVGSELGEAIKAELVKCLQSHADVFAWSHEDMPGIDRGIACHKLAVKRGARPVRQ 695

Query: 2717 KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K R    ER EA+  EV KL KAG IRE  YP+ ++NVV+VKK+NGKWR CV
Sbjct: 696  KRRCFNHERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCV 747


>ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608416 [Citrus sinensis]
          Length = 1313

 Score =  210 bits (535), Expect = 3e-51
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 2/352 (0%)
 Frame = +2

Query: 1823 AHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAY 2002
            A K  +    PI + E+E   +++PH DALV+   V +  + RILVD GSS +ILF  A 
Sbjct: 445  AAKRAKVRQVPIMWTEDEEEGILYPHEDALVIKALVASTELRRILVDTGSSVDILFKSAL 504

Query: 2003 EQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHN 2182
            + +G+S   L    T L GF G  + P G + LP+T+G   +  T+M+D +VV+  + + 
Sbjct: 505  DDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFERTMMLDFVVVEERSPYQ 564

Query: 2183 AIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQI 2362
             I+GR F+   + V+ST++LA K+     VGVV+G Q   R CY T  K       T Q+
Sbjct: 565  MILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMARSCYATAAK------ETLQV 618

Query: 2363 SAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTIN--QQAAEEVKEIQLTDGD 2536
            ++                               LD R D+ N  Q+  E+++E+ ++  D
Sbjct: 619  TS-------------------------------LDNRGDSKNGRQEPVEKLEEVVVSRSD 647

Query: 2537 ETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK* 2716
             ++ VK+GS+L   +  +L   L+ + D+FAW H+DM  I+  +  HKL V    +P++ 
Sbjct: 648  PSRVVKVGSELGREIKTELVKCLQSHADIFAWSHEDMPGIDRRIACHKLAVKKGARPVRQ 707

Query: 2717 KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K R    +R E +  EV KL KAG IRE  YP+ ++NVV+VKK+NGKWR CV
Sbjct: 708  KRRCFNHKRYETINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCV 759



 Score = 60.8 bits (146), Expect = 3e-06
 Identities = 30/79 (37%), Positives = 44/79 (55%)
 Frame = +2

Query: 1541 RDVNRRDRHRAYNNYTPFNQSSEQTLIEI*GRERLQWPKKLKSNANRRDRQKYYEFYNDH 1720
            R+V   D+  AY  YTP   S E+    I GR  L  P  +   A+RRD+ ++ +F+N H
Sbjct: 295  REVQLVDQSAAYRRYTPLKISIEELYERIEGRGLLYTPAPITKPAHRRDKSRFCKFHNTH 354

Query: 1721 GHRTNDCVDLKNELETLAR 1777
            GH  + C DL+ ++E L R
Sbjct: 355  GHTISQCRDLRIQVEDLVR 373


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  203 bits (516), Expect = 4e-49
 Identities = 139/440 (31%), Positives = 217/440 (49%), Gaps = 6/440 (1%)
 Frame = +2

Query: 1571 AYNNYTPFNQSSEQTLIEI*GRERLQWPKKLKSNANRRDRQKYYEFYNDHGHRTNDCVDL 1750
            A   YTP     E+    I GR  L  P  +   A+RRD+ ++ +F++ HG+  + C DL
Sbjct: 433  AEQQYTPLKVHMEELYERIEGRGLLYPPAPITKPAHRRDKSRFCKFHDTHGNTISQCRDL 492

Query: 1751 KNELETLARLM*-----EAWAEVLHVE-TRAHKVLRQADFPITFIEEEARRVMHPHIDAL 1912
            K ++E L R        +    VL    TR   + R  +     I ++   +++ H DAL
Sbjct: 493  KIQVEDLVRNRYLDEYVDGMTPVLESPYTRDEGMERSLECEQLTIYDDEEGILYLHEDAL 552

Query: 1913 VVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LTPIETPLIGFFGDSIMPEGR 2092
            V+   V    + RILVD GSS +ILF  A + +G+S   L    T L GF G  + P G 
Sbjct: 553  VIKAMVAAIELRRILVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGI 612

Query: 2093 LTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDIKAVVSTYHLAFKFPTEKGV 2272
              LP+T+G   +   +M+  +VV+  + +  I+GR F+   + V+ST++LA K+     V
Sbjct: 613  NELPITVGSKPFERIVMLYFVVVEERSPYQMILGRPFIRISQCVISTHYLALKYRVNGVV 672

Query: 2273 GVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQIQGSGARNGWLTHQIHNDSM 2452
            GVV+G Q  TR CY T  K       T Q++++                        DS 
Sbjct: 673  GVVKGVQKMTRSCYATAAK------ETLQVTSL--------------------DNRGDSK 706

Query: 2453 RGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLDAPLADQLSSLLKEYRDVFAW 2632
            +G          Q+  E++ E+ +   + ++ VKIGS L   +  +L   L+ Y D+FAW
Sbjct: 707  KG---------RQEPVEKLDEVFVNKSNPSRMVKIGSGLGETIKGELVKYLQSYADIFAW 757

Query: 2633 YHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEALKEEVTKLNKAGLIREVLYP 2812
             H+DM  I+  +  HKL +     P++ K R    ER EA+  EV +L KAG IR+  Y 
Sbjct: 758  SHEDMPRIDHGIAYHKLAIRKGAMPVRQKRRCFNQERYEAINAEVEQLLKAGFIRKTKYS 817

Query: 2813 DRLANVVMVKKSNGKWRTCV 2872
            + ++NV++VKK++   R CV
Sbjct: 818  EWISNVILVKKAS---RMCV 834


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score =  200 bits (508), Expect = 4e-48
 Identities = 122/352 (34%), Positives = 185/352 (52%)
 Frame = +2

Query: 1817 TRAHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQ 1996
            T A K  R    PI + +E+   +++PH DALV+  +V +    RIL+D GSS ++LF  
Sbjct: 533  TPAAKRARVRQVPIMWTDEDEEGILYPHEDALVIKATVASKEFDRILIDTGSSVDVLFKS 592

Query: 1997 AYEQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTS 2176
              E++G++   L    T L GF G  ++P G + LP+TIG      T+++D +VV     
Sbjct: 593  TLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVELPITIGSSPTERTMILDFVVVDEEGP 652

Query: 2177 HNAIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTY 2356
            +  I+GR FL   KAV+S ++LA K+     VGVVRG Q   R CY++ ++    IT   
Sbjct: 653  YQMILGRPFLRMSKAVLSNHYLALKYRVNGIVGVVRGGQRIARGCYSSAVREAMQITS-- 710

Query: 2357 QISAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGD 2536
                                  L  ++ N   R           Q+  E+++ + L   +
Sbjct: 711  ----------------------LDTRVENKKGR-----------QEPVEDLETVSLGPEN 737

Query: 2537 ETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK* 2716
              K ++IGS+L+     +L   L+ + DVFAW H+DM  I+  V  H+L +    + ++ 
Sbjct: 738  PGKTIRIGSRLEGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACHRLAIKKGARAVRQ 797

Query: 2717 KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K R    ER EA+  EV KL +AG IREV YP+ ++NVV+VKK+NGKWR CV
Sbjct: 798  KRRCFNQERYEAINGEVEKLLRAGFIREVSYPEWISNVVLVKKANGKWRMCV 849



 Score = 57.0 bits (136), Expect(2) = 5e-09
 Identities = 30/86 (34%), Positives = 44/86 (51%)
 Frame = +2

Query: 1520 KKGQSALRDVNRRDRHRAYNNYTPFNQSSEQTLIEI*GRERLQWPKKLKSNANRRDRQKY 1699
            + G +  R V+  D++  Y  YT    S ++    I  R  L  P  +    NRRDR +Y
Sbjct: 379  QSGANRERAVHLIDQNPDYGRYTSLKMSLDEVYEAIKDRGLLHLPTPITKLPNRRDRGRY 438

Query: 1700 YEFYNDHGHRTNDCVDLKNELETLAR 1777
             +F+  HGH T +C DLK ++E L R
Sbjct: 439  CKFHGTHGHTTAECRDLKTQVEDLVR 464



 Score = 33.1 bits (74), Expect(2) = 5e-09
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 57/166 (34%)
 Frame = +3

Query: 1197 LKQQNEKSLKEFLGRFNSEKLKVRDFSDNTAMTACYAGLLDGPFYYSLSKRMAKTYLELV 1376
            +KQ  +++L+EF+ RF+   L +  F+   A+     G+  G  +Y+L     +TY    
Sbjct: 206  MKQGEQETLREFIKRFHRAVLDLGAFNHPQALRGLKEGVKIGRLWYNLRSPAIQTYATAY 265

Query: 1377 QRAHKYINIDE------------AIGKISKQA---------------------------- 1436
            ++A + I I+E             +G+  K+A                            
Sbjct: 266  EQAKRDIEIEEEKAARIKTDQLEGLGRKEKKALPGNGPIRRRDHQASGSGAGGRVTAYQP 325

Query: 1437 --------------PESSTRTDKRKR---SDNLHEHKHQNRWNEPK 1523
                          P S  R   R+    S +LH+H H +R + P+
Sbjct: 326  HQRPPQYQRSRAQPPRSPAREPWRRHELASGDLHQHPHGSRASRPE 371


>ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617447 [Citrus sinensis]
          Length = 1100

 Score =  199 bits (507), Expect = 5e-48
 Identities = 121/358 (33%), Positives = 187/358 (52%)
 Frame = +2

Query: 1799 EVLHVETRAHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSA 1978
            EVL     A K  +    PI + +++   +++PH DALV+   V    + RIL++ GSS 
Sbjct: 292  EVLFNLPAAEKA-KMRQVPIMWTDDDEEGILYPHEDALVIKAMVAGTELRRILIEMGSSV 350

Query: 1979 NILFFQAYEQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLV 2158
            +I+F    + +G++   L    T L GF G  + P G + LP+T+G   +  T+M+D +V
Sbjct: 351  DIVFKSTLDDMGIADLKLERTNTSLKGFGGGRLTPIGIIELPITVGTKPFERTMMLDFVV 410

Query: 2159 VKCPTSHNAIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVP 2338
            V+  + +  I+GR F+   + VVST++L  K+     VGVV+G Q   R CY T  K   
Sbjct: 411  VEERSPYEIILGRPFMRISQCVVSTHYLPLKYRVNGVVGVVKGDQRMARSCYATAAK--- 467

Query: 2339 CITRTYQISAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEI 2518
                T Q++++                        DS +G          Q+  E+++E+
Sbjct: 468  ---ETLQVTSL--------------------DNRGDSKKG---------RQEPVEKLEEV 495

Query: 2519 QLTDGDETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPH 2698
             ++  + ++ VKIGS L   +  +L   L+   D+FAW H+D   IN  V  HKL +   
Sbjct: 496  AVSKSNPSRVVKIGSGLVGAVRGKLVKCLQSRADIFAWSHEDTPGINRGVACHKLAIKKE 555

Query: 2699 YKPIK*KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
             +P++ K R    ER EA+  EV KL KAG IRE  YP+ ++NVV+VKK+NGKWR CV
Sbjct: 556  ARPVRQKRRCFNQERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCV 613


>gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]
          Length = 1902

 Score =  196 bits (497), Expect = 7e-47
 Identities = 119/349 (34%), Positives = 175/349 (50%)
 Frame = +2

Query: 1826 HKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYE 2005
            HK  R +  PITF   + +   +PH DA+V+  ++    V +ILVD GSSA+ILF   ++
Sbjct: 635  HKFGRWSHIPITFDSRDMKLRDYPHTDAMVIETNLAGWTVTKILVDTGSSADILFASTFD 694

Query: 2006 QLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNA 2185
             + L ++ L P + PL GF G  +   G+++LPVT GD     T  +   VV     +NA
Sbjct: 695  SMKLDRNLLQPADNPLYGFGGQQVRAVGKISLPVTFGDQINCRTEHITFDVVDMFYPYNA 754

Query: 2186 IVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQIS 2365
            I GR   N   AV+   +L  K P  KGV  V G Q   R     +              
Sbjct: 755  IFGRGVTNAFNAVIHPAYLCMKLPAPKGVVAVYGDQDIARAAEGNV-------------- 800

Query: 2366 AV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETK 2545
                         G RN     +    ++  + +  +D +     EE K++QL +G+  +
Sbjct: 801  -----------APGQRNVHNLSKPQTPAINDEGEVCKDKVKAAPKEETKQVQLLEGNTER 849

Query: 2546 RVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMR 2725
            +V I + LD      L + L+E  D FAW  +D+  +N +++ H LN+   Y+PIK K+R
Sbjct: 850  KVLISANLDPQSEGNLVTFLRENSDTFAWSAEDLKGVNRSMIEHSLNIKTGYRPIKQKLR 909

Query: 2726 IIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
             +  ER EA K EV +L  AG+IR V YP  L+NVV+V+K N KWR CV
Sbjct: 910  KMSEERKEAAKAEVKRLLDAGVIRPVKYPSWLSNVVLVQKKNKKWRMCV 958


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  193 bits (490), Expect = 4e-46
 Identities = 118/341 (34%), Positives = 192/341 (56%), Gaps = 1/341 (0%)
 Frame = +2

Query: 1853 PITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*L 2032
            PITF +E+   +     D +V+T+ +    + ++LVD GSS +IL+++ ++++ + ++ +
Sbjct: 621  PITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEI 680

Query: 2033 TPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLND 2212
             P    ++GF  + +  +G + L  T GDD  + T+ +  L+V   TS+N ++GR  +N 
Sbjct: 681  QPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSINR 740

Query: 2213 IKAVVSTYHLAFKFPTEKG-VGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFK 2389
            +KA+VST HLA KFP+  G +  V   Q   RECY   +KV P   R Y  SA    + +
Sbjct: 741  LKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASLKVEP-TRRLYTTSAERTTE-R 798

Query: 2390 QIQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKL 2569
            + + +  R+     + H  ++  DLDPR D    +A E+++ I L D D  ++  +G+ L
Sbjct: 799  RGRSTERRSRGRESRRHLVAL-VDLDPRLDDPRMEAGEDLQPIFLRDKD--RKTYMGTSL 855

Query: 2570 DAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDE 2749
                 + +   L +  D+FAW   DM  +   V+ H+L+V    +PI  K R +G ER +
Sbjct: 856  KPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLSVYTEARPIAQKKRKLGEERRK 915

Query: 2750 ALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            A +EE  KL +AG I++  Y   LANVVMVKK+NGKWR CV
Sbjct: 916  AAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRMCV 956


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
            [Sorghum bicolor]
          Length = 1877

 Score =  192 bits (488), Expect = 7e-46
 Identities = 129/340 (37%), Positives = 175/340 (51%)
 Frame = +2

Query: 1853 PITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*L 2032
            PITF EE+ R   +PH DALV+T +V    V RILVD+GSSA+I+F   ++Q+ LS+S L
Sbjct: 619  PITFTEEDLRLESYPHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQL 678

Query: 2033 TPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLND 2212
             P E+PLIGF G  I   G++ LPV+ G  +   T  V   VV     +NAI GR FLN 
Sbjct: 679  QPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNK 738

Query: 2213 IKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQ 2392
              A     +L  K P   GV  V GSQ   R     I K                  F+ 
Sbjct: 739  FNAAAHMGYLCMKIPALHGVITVHGSQKEARNIEKAIYK-----------------SFRN 781

Query: 2393 IQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLD 2572
            I    +         H  S   D+ PR  T N    EE K I L +    K+V I + L 
Sbjct: 782  INSVDSTQ-------HEASQPPDM-PRGKT-NLADQEETKCIPLQEAVPDKKVTISATLS 832

Query: 2573 APLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEA 2752
                 +L  +L++ +D+FAW   D+  ++  ++ H L++DP  +P K + R +  ER  A
Sbjct: 833  REEELELLDVLQKNQDIFAWSAADLQGVSRDIIEHSLDIDPRMRPKKQRQRKMSEERTLA 892

Query: 2753 LKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
             K EV +L  A +IREV+YP+ LANVV+V K NGK R C+
Sbjct: 893  AKAEVQRLLDAKVIREVIYPEWLANVVLVPKKNGKMRMCI 932


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  181 bits (458), Expect = 2e-42
 Identities = 109/339 (32%), Positives = 183/339 (53%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            I+F  E+A  ++ PH D LVV++ +  C V R+L+D GSSA++LF+ A++++ + +  LT
Sbjct: 737  ISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLT 796

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
                PL GF G  +   G+++L V  G         +   VV  P  +NAI+GR  +N  
Sbjct: 797  NAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIF 856

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
            +A++   ++  K P  +GV  VRG Q                + R Y           ++
Sbjct: 857  EAIIHHNYICMKLPGPRGVITVRGEQ---------------LVARKY-----------EL 890

Query: 2396 QGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLDA 2575
            QG+ +  G   H +  D  +G+    +  I +    + K++QL + D  K + IG  L+ 
Sbjct: 891  QGTPSVKG--VHVV--DQKQGEYIKIQKPIPE---GKTKKVQLDEHDPGKFILIGENLEK 943

Query: 2576 PLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEAL 2755
             + +++  ++KE   VFAW  D++  ++ +++ H L +   YKP K K+R +  +R +A 
Sbjct: 944  HIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAA 1003

Query: 2756 KEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K E+ KL KA +IREV++P+ LAN V+VKK+NGKWR C+
Sbjct: 1004 KIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCI 1042


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  173 bits (438), Expect = 5e-40
 Identities = 109/340 (32%), Positives = 169/340 (49%)
 Frame = +2

Query: 1853 PITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*L 2032
            PI+F + +   +  PH D LVV + +++  V R+L+D GSS +++F      + ++   +
Sbjct: 599  PISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQI 658

Query: 2033 TPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLND 2212
             P+  PL GF GD +M  G + LP+ +G         V  +V+  P  +N I+G  +++ 
Sbjct: 659  KPVSKPLAGFDGDFVMTIGTIKLPIFVGG----LIAWVKFVVIGKPAVYNVILGTPWIHQ 714

Query: 2213 IKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQ 2392
            ++A+ STYH   KFPT  G+  +R              K     +R+Y+ S +       
Sbjct: 715  MQAIPSTYHQCVKFPTHNGIFTLRAP------------KEAKTPSRSYEESEL------- 755

Query: 2393 IQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLD 2572
                                      R + +N           + + D T+ V +G+++ 
Sbjct: 756  -------------------------CRTEMVN-----------IDESDPTRCVGVGAEIS 779

Query: 2573 APLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEA 2752
              +  +L +LLK     FAW  +DM  I+ A+  H+LNVDP +KP+K K R +G ER  A
Sbjct: 780  PSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARA 839

Query: 2753 LKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            + EEV KL KAG I EV YP+ LAN V+VKK NGKWR CV
Sbjct: 840  VNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCV 879


>ref|XP_006494926.1| PREDICTED: uncharacterized protein LOC102618417 [Citrus sinensis]
          Length = 776

 Score =  172 bits (437), Expect = 6e-40
 Identities = 115/342 (33%), Positives = 170/342 (49%), Gaps = 2/342 (0%)
 Frame = +2

Query: 1817 TRAHKVLRQADFPITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQ 1996
            T A K  R    PI + +E+ + V++PH DALV+  +V +    RIL+D GSS ++LF  
Sbjct: 459  TPAAKRARVRRVPIMWTDEDKKWVLYPHEDALVIKATVASKKFDRILIDTGSSVDVLFKS 518

Query: 1997 AYEQLGLSKS*LTPIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTS 2176
              E++G++   L    T L GF G  ++P G + LP+TIG      T+M+D +VV     
Sbjct: 519  TLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVELPITIGSSPTERTIMLDFVVVDEEGP 578

Query: 2177 HNAIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTY 2356
            +  I+GR FL   KAV+S ++LA K+     VGVVRG Q   R CY+   +    IT   
Sbjct: 579  YQMILGRPFLRMSKAVLSNHYLALKYWVNGVVGVVRGDQRIARSCYSLAAREAMQIT--- 635

Query: 2357 QISAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTIN--QQAAEEVKEIQLTD 2530
                                               LD R +  N  Q+  E+++ + L  
Sbjct: 636  ----------------------------------SLDTRVENKNGRQEPVEDLETVSLGP 661

Query: 2531 GDETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPI 2710
             +  K ++IGS+L      +L   L+ + DVFAW H+DM  I+  V  HKL +    + +
Sbjct: 662  ENRGKTIRIGSRLKGERKHELVKCLQAHADVFAWTHEDMPGIDPEVACHKLAIKKGARAV 721

Query: 2711 K*KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVM 2836
            + K R    ER EA+  EV KL  A  IREV YP+ ++NVV+
Sbjct: 722  RQKRRCFNQERYEAINGEVEKLLGARFIREVSYPEWISNVVL 763


>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1722

 Score =  167 bits (423), Expect = 3e-38
 Identities = 111/342 (32%), Positives = 169/342 (49%), Gaps = 3/342 (0%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            I F  E+A  VM PH D LV++  +    V RILVD GSSA+++F +AY ++GL+   LT
Sbjct: 518  IYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALT 577

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
            P    L GF G+++   G+  L +  G  +      V   VV  P ++N I GR  LN  
Sbjct: 578  PAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMF 637

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
            + +    +L  K P   GV VV+G                                   +
Sbjct: 638  EVISHHNYLELKMPGPTGVIVVKG-----------------------------------L 662

Query: 2396 QGSGARNGWLT---HQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSK 2566
            Q S A  G L      +HN  ++    P+         + +K +Q+ D   TK V +G  
Sbjct: 663  QPSAASKGDLAIINRAVHNVEVKLHDRPKHAPKPTPHGKIIK-VQIDDAVPTKLVSLGGD 721

Query: 2567 LDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERD 2746
            +     + +  + K+  D+FAW  D++  +++ +++H L V P  KP K K+R +  +R 
Sbjct: 722  MGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMSADRQ 781

Query: 2747 EALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            EA K EV KL +AG+I+E+ +P+ LAN V+V+KSNGKWR CV
Sbjct: 782  EAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCV 823


>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1735

 Score =  167 bits (423), Expect = 3e-38
 Identities = 111/342 (32%), Positives = 169/342 (49%), Gaps = 3/342 (0%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            I F  E+A  VM PH D LV++  +    V RILVD GSSA+++F +AY ++GL+   LT
Sbjct: 531  IYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALT 590

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
            P    L GF G+++   G+  L +  G  +      V   VV  P ++N I GR  LN  
Sbjct: 591  PAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMF 650

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
            + +    +L  K P   GV VV+G                                   +
Sbjct: 651  EVISHHNYLELKMPGPTGVIVVKG-----------------------------------L 675

Query: 2396 QGSGARNGWLT---HQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSK 2566
            Q S A  G L      +HN  ++    P+         + +K +Q+ D   TK V +G  
Sbjct: 676  QPSAASKGDLAIINRAVHNVEVKLHDRPKHAPKPTPHGKIIK-VQIDDAVPTKLVSLGGD 734

Query: 2567 LDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERD 2746
            +     + +  + K+  D+FAW  D++  +++ +++H L V P  KP K K+R +  +R 
Sbjct: 735  MGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMSADRQ 794

Query: 2747 EALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            EA K EV KL +AG+I+E+ +P+ LAN V+V+KSNGKWR CV
Sbjct: 795  EAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCV 836


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  165 bits (418), Expect = 1e-37
 Identities = 108/339 (31%), Positives = 175/339 (51%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            IT   ++   V+ PH D LVV + ++N  V R L+D G+  NI+F + +  LGL    L+
Sbjct: 47   ITIGRKDYEGVVAPHSDPLVVHLDISNHLVKRCLIDTGAYTNIMFRECFLNLGLKIEDLS 106

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
            P   PL  F G  ++P G + LPV  G       ++ + +V+   +++N ++GR+ L++ 
Sbjct: 107  PCTNPLYSFSGAGLVPLGSIRLPVMFGQTDAAKNVLSEFVVIDGSSAYNVLIGRVTLSEA 166

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
             AV+S   L   + +++G      S+    E     I    C  ++ +++       K  
Sbjct: 167  DAVMSIRALTLMYVSDQGEVQKLVSKDERDEVVNVQISARGCNMQSLKVAK------KSE 220

Query: 2396 QGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLDA 2575
            +G             + S+R + DP   + N  +  E  E +  + D  + V +G  L+ 
Sbjct: 221  KGK------------SPSLRQEGDPM--STNNVSMVEGAETEQVEIDPGRTVTVGVGLEP 266

Query: 2576 PLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEAL 2755
                 L  LL++ +DVFA+   +M  ++  V+VHKLNV  + +P+K KMR    E+D+A+
Sbjct: 267  KFRADLLDLLRKNKDVFAYSAAEMPGVSREVIVHKLNVLSNARPVKQKMRNSSAEKDDAI 326

Query: 2756 KEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            K EV KL +AG I    YP+ LANVVMVKKS+G WR CV
Sbjct: 327  KAEVDKLLEAGFIMPCTYPEWLANVVMVKKSSGGWRMCV 365


>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa Japonica Group]
          Length = 1605

 Score =  154 bits (390), Expect = 2e-34
 Identities = 109/342 (31%), Positives = 166/342 (48%), Gaps = 3/342 (0%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            I+F  E+A  VM PH D LV++       V RILV  GSSA+++F +AY ++GL    LT
Sbjct: 481  ISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILVGRGSSADVIFAEAYAKMGLPTQALT 540

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
            P    L GF G+++   G+  L + +G  +      V   VV  P ++NAI GR  LN  
Sbjct: 541  PAPASLRGFGGEAVQVLGQALLLIALGSGENRREEQVLFDVVDIPYNYNAIFGRATLNKF 600

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
            +A+    +L  K P   GV VV+G                                   +
Sbjct: 601  EAISHHNYLKLKMPGLTGVIVVKG-----------------------------------L 625

Query: 2396 QGSGARNGWL---THQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSK 2566
            Q S A  G L     ++HN       D  +         ++ ++Q+ D + TK V +G  
Sbjct: 626  QPSAASKGDLAIINREVHNVEAE-PYDRPKHAPKPTPHSKIIKVQIDDANPTKLVSLGDD 684

Query: 2567 LDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERD 2746
            +    A  +  +LK+  D+FAW  D++  +   +++H L V    KP K K+R +  +R 
Sbjct: 685  MGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMSADRQ 744

Query: 2747 EALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            EA+K EV KL +AG+I+E+ +P+ LAN V+V+KS  K R CV
Sbjct: 745  EAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCV 786


>emb|CAH68043.1| OSIGBa0139N19-OSIGBa0137L10.12 [Oryza sativa Indica Group]
          Length = 1650

 Score =  154 bits (388), Expect = 3e-34
 Identities = 109/342 (31%), Positives = 165/342 (48%), Gaps = 3/342 (0%)
 Frame = +2

Query: 1856 ITFIEEEARRVMHPHIDALVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LT 2035
            I+F  E+A  VM PH D LV++       V RILV  GSSA+++F +AY ++GL    LT
Sbjct: 526  ISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILVGRGSSADVIFAEAYAKMGLPTQALT 585

Query: 2036 PIETPLIGFFGDSIMPEGRLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDI 2215
            P    L GF G+++   G+  L +  G  +      V   VV  P ++NAI GR  LN  
Sbjct: 586  PAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNAIFGRATLNKF 645

Query: 2216 KAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQI 2395
            +A+    +L  K P   GV VV+G                                   +
Sbjct: 646  EAISHHNYLKLKMPGLTGVIVVKG-----------------------------------L 670

Query: 2396 QGSGARNGWL---THQIHNDSMRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSK 2566
            Q S A  G L     ++HN       D  +         ++ ++Q+ D + TK V +G  
Sbjct: 671  QPSAASKGDLAIINREVHNVEAE-PYDRPKHAPKPTPHSKIIKVQIDDANPTKLVSLGDD 729

Query: 2567 LDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERD 2746
            +    A  +  +LK+  D+FAW  D++  +   +++H L V    KP K K+R +  +R 
Sbjct: 730  MGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMSADRQ 789

Query: 2747 EALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
            EA+K EV KL +AG+I+E+ +P+ LAN V+V+KS  K R CV
Sbjct: 790  EAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCV 831


>ref|XP_004964144.1| PREDICTED: uncharacterized protein LOC101778922 [Setaria italica]
          Length = 619

 Score =  149 bits (377), Expect = 5e-33
 Identities = 96/321 (29%), Positives = 154/321 (47%)
 Frame = +2

Query: 1910 LVVTMSVTNC*VHRILVDNGSSANILFFQAYEQLGLSKS*LTPIETPLIGFFGDSIMPEG 2089
            +V+   +    V ++LVD GSS +ILF  A+ ++ +  + L     PL+GF G  +   G
Sbjct: 1    MVIKALIAGWTVGKVLVDTGSSTDILFANAFREMNIDMNTLDQANIPLLGFGGKPMKALG 60

Query: 2090 RLTLPVTIGDDQYTTTLMVDLLVVKCPTSHNAIVGRLFLNDIKAVVSTYHLAFKFPTEKG 2269
            ++ LP++ GD     T  +   VV+    +NAI+GR F+  + A +   +L  K P  KG
Sbjct: 61   KIALPISFGDRDNARTQHITFDVVEMHYPYNAILGRGFITKMDATIRQLYLCMKIPALKG 120

Query: 2270 VGVVRGSQHGTRECYTTIIKVVPCITRTYQISAV*LYDFKQIQGSGARNGWLTHQIHNDS 2449
            V +V G Q   R     +              A+   +   +  S         + H++ 
Sbjct: 121  VIIVYGDQQMARNIERGV--------------ALGQKNVHHLASSNEAESSAKQKAHDEP 166

Query: 2450 MRGDLDPREDTINQQAAEEVKEIQLTDGDETKRVKIGSKLDAPLADQLSSLLKEYRDVFA 2629
             R      ++ I   A  E K + L      + V IG+ LD      L   L + +D+FA
Sbjct: 167  KRD-----KEKIKISADGETKRVLLDGYIADRFVTIGANLDPEEECNLIECLNKNKDIFA 221

Query: 2630 WYHDDMLEINLAVVVHKLNVDPHYKPIK*KMRIIGLERDEALKEEVTKLNKAGLIREVLY 2809
            W   D+  ++  ++ H L++    +P K K+R +  E+ +A+K EV +L KA +IR + Y
Sbjct: 222  WSAGDLKGVDREIIEHSLDIRQGARPKKQKLRKMSDEKVQAVKAEVDRLLKANVIRPIQY 281

Query: 2810 PDRLANVVMVKKSNGKWRTCV 2872
            PD LAN V VKK NGKWR C+
Sbjct: 282  PDWLANTVPVKKKNGKWRMCI 302


>gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1773

 Score =  140 bits (352), Expect = 4e-30
 Identities = 109/360 (30%), Positives = 166/360 (46%), Gaps = 2/360 (0%)
 Frame = +2

Query: 1799 EVLHVETRAHKVLRQADFPITFIEEE-ARRVMHPHIDALVVTMSVTNC*VHRILVDNGSS 1975
            E+  V+    + LR ++  I F   +   RV+HP    LV+   V N  + R L+D GS+
Sbjct: 781  EINAVQPNTPQYLRWSETAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 840

Query: 1976 ANILFFQAYEQLGLSKS*LTPIETPLIGFF-GDSIMPEGRLTLPVTIGDDQYTTTLMVDL 2152
             NILF +  + + + ++ L P   P  G   G S  P G++TLPVT G  +   T  V  
Sbjct: 841  LNILFAKTLDDMQIPRTELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENVCF 900

Query: 2153 LVVKCPTSHNAIVGRLFLNDIKAVVSTYHLAFKFPTEKGVGVVRGSQHGTRECYTTIIKV 2332
             V    T+++AI+GR  L    AV    ++  K P  +GV  +R          + I + 
Sbjct: 901  EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVISLR----------SDIKQA 950

Query: 2333 VPCITRTYQISAV*LYDFKQIQGSGARNGWLTHQIHNDSMRGDLDPREDTINQQAAEEVK 2512
            V C   +Y+++                      Q H  ++  +      T   +      
Sbjct: 951  VTCDKESYEMA----------------------QTHETTLAREEIRLSATTAGEGEVPAT 988

Query: 2513 EIQLTDGDETKRVKIGSKLDAPLADQLSSLLKEYRDVFAWYHDDMLEINLAVVVHKLNVD 2692
            ++  T+  + K  KI      PL           +D+FAW   DM  I   V+ H L+V 
Sbjct: 989  KLTKTEESDAKAKKI------PLDPSDPDKTANNKDIFAWKPSDMPGIPREVIEHSLHVK 1042

Query: 2693 PHYKPIK*KMRIIGLERDEALKEEVTKLNKAGLIREVLYPDRLANVVMVKKSNGKWRTCV 2872
               KPIK ++R    +R +A+KEE+TKL  AG I+EVL+PD LAN V+V+K  G+WR CV
Sbjct: 1043 EDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCV 1102