BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00005182
         (4577 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  2070   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1906   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1898   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1892   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1891   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1885   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1878   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1869   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1868   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1861   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1850   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...  1834   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1823   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1810   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1805   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...  1787   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1784   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...  1769   0.0  
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s...  1751   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...  1737   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 2070 bits (5362), Expect = 0.0
 Identities = 1048/1391 (75%), Positives = 1181/1391 (84%), Gaps = 9/1391 (0%)
 Frame = +1

Query: 256  VQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALL 435
            ++D + FTKEPYIEDVGPRKI+SI+F+ FS +EI KAAEVQVW   YYD+ RKP+ N LL
Sbjct: 1    MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 436  DPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARIL 615
            DP MGPANK GTCATC GNF  CPGH GYL LALPV+NVGY ++++DILK ICKSC+R+L
Sbjct: 61   DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 616  LPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKF-----NKPTNTCRRCGYVNGTVKKTG 780
            L EK   + LKKMR+ K+EAL+K+ L K+IV+K      +K    C RCGY+NG VKK  
Sbjct: 121  LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 781  TLLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELL 960
            ++LGI+HDRSKI DG+LEECSSA+SH    +AS ++V +LNPV+VL+LFKRM DEDC+LL
Sbjct: 181  SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240

Query: 961  YLHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTD 1140
             L +RPEKL++T+I VPPI IRPSVF DGG +SNEND+T RL  II+ANA L QELQ T 
Sbjct: 241  NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300

Query: 1141 K-SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRV 1317
              SKCLA WD LQ+EVAQYINSD+RG+PL+MQ+A P  GF+QRLKGKQGRFRGNLSGKRV
Sbjct: 301  STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRV 360

Query: 1318 EYTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFI 1497
            EYTGRTVISPDPNLKITEVAIPILMA++L+YPERVSHHNIEKLRQC+ NGP KYPGA  I
Sbjct: 361  EYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLI 420

Query: 1498 RYPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMP 1677
            RYPD S+  L +S RKR A+ELKYGYIVERHLEDGDVVLFNRQPSLHRMSIM HRARIMP
Sbjct: 421  RYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 480

Query: 1678 WRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST 1857
            WRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST
Sbjct: 481  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST 540

Query: 1858 QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLV 2037
            QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD +DLPTPA+IKP ELWTGKQLF+VL+
Sbjct: 541  QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLL 600

Query: 2038 RPNAQMRVFINLTVLEKNYSK--SGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGL 2211
            RP+A +RV++NLTV+EK Y+K    E+MCP+DGFVYFRNSEL+SGQLGKATLGNGNKDGL
Sbjct: 601  RPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGL 660

Query: 2212 FSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEA 2391
            FS+LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG LLN QK  RIEEGYE 
Sbjct: 661  FSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYEN 720

Query: 2392 CDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQC 2571
            C ELIQ YNKG LKLQPGC+AAQTLEAEITGVLNKIRETTA VCMEELHWRNSPLIMSQC
Sbjct: 721  CHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQC 780

Query: 2572 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT 2751
            GSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRKSK P AKGFVA+SFYTGLT
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLT 840

Query: 2752 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYG 2931
            ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSI YD TVRNA+G +VQFLYG
Sbjct: 841  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYG 900

Query: 2932 DDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSAAG 3111
            DDGMDPA+MEGK G PLN  RL+LKVKATCPA   ASLS  ++   + ++L  H+ SA  
Sbjct: 901  DDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE- 958

Query: 3112 GCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQLQV 3291
            GCSDAFK  L  F+ +  +    T+ AL L   + G  N DI E  A NISGITS+QLQV
Sbjct: 959  GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQV 1018

Query: 3292 FLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 3471
            FLDTC SRY  KR                EPGTQMTLKTFHFAGVASMNVTLGVPRIKEI
Sbjct: 1019 FLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1078

Query: 3472 INGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTLD 3651
            INGAK ISTPIITA LEC+N+VK+AR+VKG +E+TTLG+VAKS+KIV+TSR A I V LD
Sbjct: 1079 INGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALD 1138

Query: 3652 MERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSKLQ 3831
            ME I A QL + +  V++SIL++ R       KLK +H++VLD  KL +  P+GDRS + 
Sbjct: 1139 MEGIQASQLSIDSNIVRESILRNRRI------KLKQQHIKVLDAGKLEV-HPQGDRSTIH 1191

Query: 3832 FELHSIRATLPKVIVKGIRTVERAVINKD-KGKYNLLVEGTNLRAVMGTPGVDGCKTTSN 4008
            FELH+++  LP V+VKGI TVERAVINKD K KYNLLVEGT L+ VMGT GV G +TTSN
Sbjct: 1192 FELHALKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSN 1251

Query: 4009 NIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQ 4188
            +IIEV++TLGIEAARKCII+EIQYTMASHGMSIDIRHMMLLADLMT++GEVLGITRFGIQ
Sbjct: 1252 HIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQ 1311

Query: 4189 KMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSLKQE 4368
            KM +SVLMLASFEKT+DHLFNAS +GRDDKIEGVSECIIMGIPMQ+GTGILKVRQ L+Q 
Sbjct: 1312 KMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQV 1371

Query: 4369 VKLNYGLDPII 4401
             +L+YGLDPII
Sbjct: 1372 PELSYGLDPII 1382


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1906 bits (4937), Expect = 0.0
 Identities = 967/1396 (69%), Positives = 1128/1396 (80%), Gaps = 11/1396 (0%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            MA  +++L  TKEP+IEDVG R+IKSI+FS FSG E+R++AEVQVW+S  Y+   KP+PN
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 427  ALLDPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCA 606
             LLD  MG ANK G C+TCHG+F  CPGHFGYL LALPVFNVG+FN ++D+LK ICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 607  RILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGTL 786
            R+LL EKDR+E LKKMRNPK + LQKS + K++  K     + C  CG++NG  KK    
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCK--LSRCPWCGFINGVAKKGRAG 178

Query: 787  LGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYL 966
            L I+HD SK +DG+ EE   ALSHK   + S++ V +L+P  VL+LFKRM DEDCELL L
Sbjct: 179  LIILHDCSKTLDGSTEELRDALSHKK-EKLSISAVRMLDPAIVLSLFKRMTDEDCELLNL 237

Query: 967  HDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDK- 1143
             DRPEKLI+T+IAVPP+PIRPSVF  GG  SNE+ IT  L +I   N+IL++ LQ   + 
Sbjct: 238  GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQF 297

Query: 1144 SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEY 1323
             KC   W  LQ++V +YINSD   +P S      +RG +QRLKGK GRFRGNLSGKR EY
Sbjct: 298  MKCFDCWQHLQLQVVEYINSDAPSLPESQ-----HRGLVQRLKGKTGRFRGNLSGKRTEY 352

Query: 1324 TGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRY 1503
            TGRTVISPDPNL+ITEVAIPILMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANFI  
Sbjct: 353  TGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQ 412

Query: 1504 PDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 1683
            PD + +HL+Y  R+ AA +LKYG +VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 413  PDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 472

Query: 1684 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1863
            TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD
Sbjct: 473  TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532

Query: 1864 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRP 2043
            FLTSSFL+TRKD FYDR++FSL+CSY+GD M+ IDLPTPALIKP ELWTGKQLFSVLVRP
Sbjct: 533  FLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRP 592

Query: 2044 NAQMRVFINLTVLEKNYSK------SGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKD 2205
            NA  +VF+NLTV EK Y          E+MCPNDGFVYFRNSELLSGQ+GKATLGNGNKD
Sbjct: 593  NACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKD 652

Query: 2206 GLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGY 2385
            G+FS L+RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG+ LN++KK +I+ GY
Sbjct: 653  GMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGY 712

Query: 2386 EACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMS 2565
            + C +LI SY+KG L+LQPGC+AAQTLE  IT VLN+IRE   KVCM  LHWRNSPLIMS
Sbjct: 713  KDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMS 772

Query: 2566 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTG 2745
            QCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDR+LPHFP  SK PAAKGFVANSFYTG
Sbjct: 773  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTG 832

Query: 2746 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFL 2925
            LTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNASGG+VQFL
Sbjct: 833  LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFL 892

Query: 2926 YGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSA 3105
            YGDDGMDPAKMEGK G PLNL++L++KV ATCP R Q +LSP E+L+I+ +KL+ HD S+
Sbjct: 893  YGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASS 952

Query: 3106 AGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQL 3285
              GCS+ FK+LL  F+  ++  L +T+RAL LDE + G  +    E+IA NISGI+ +QL
Sbjct: 953  DDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQL 1012

Query: 3286 QVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIK 3465
            QVFLDTC SRY  K+                EPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1013 QVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1072

Query: 3466 EIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVT 3645
            EIIN AK ISTPIITA L  + DV SARIVKG +EK  LGEVA+++KIV+ S Q ++VV 
Sbjct: 1073 EIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVK 1132

Query: 3646 LDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSK 3825
            LDM+RI AL + +SA SV+ SIL H +       KLK+EHV V+D  KLRI     D+SK
Sbjct: 1133 LDMQRIEALHMGISADSVQLSILNHPKI------KLKSEHVRVIDKSKLRIYPAGIDKSK 1186

Query: 3826 LQFELHSIRATLPKVIVKGIRTVERAVIN----KDKGKYNLLVEGTNLRAVMGTPGVDGC 3993
            L +ELH +++ LPKVIVKGI TVERAVI+    ++  +Y LLVEGTNL AVMGTPGVD  
Sbjct: 1187 LLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAM 1246

Query: 3994 KTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGIT 4173
            KT SN+I+EV  TLGIEAAR+ II EIQYTM SHGM+ID RHMMLLADLMTYKGE+LGIT
Sbjct: 1247 KTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGIT 1306

Query: 4174 RFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQ 4353
            R+GI KMK SVLMLASFEKT++HLFNAS++GR+D+IEGVSECIIMGIPMQ+GTGILKVRQ
Sbjct: 1307 RYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQ 1366

Query: 4354 SLKQEVKLNYGLDPII 4401
             L    +  Y  DPI+
Sbjct: 1367 RLDHLPEFKYQPDPIL 1382


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1898 bits (4917), Expect = 0.0
 Identities = 960/1403 (68%), Positives = 1128/1403 (80%), Gaps = 18/1403 (1%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            MA  +++L  TKEP+IED G R+IKSI+FS FSG E+R++AEVQVW+S  Y+   +P+PN
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60

Query: 427  ALLDPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCA 606
             LLD  MG ANK G C+TCHG+F  CPGHFGYL LALPVFNVG+FN ++D+LK ICK C+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120

Query: 607  RILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGTL 786
            R+LL EKDR+E LKKMRNPK + LQKS + K++  K     + C  CG++NG  KK    
Sbjct: 121  RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCK--LSRCPWCGFINGVAKKGRAG 178

Query: 787  LGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYL 966
            L I+HD SK +DG+ EE   ALSHK   + S + V +L+P  VL+LFKRM DEDCELL L
Sbjct: 179  LIILHDCSKTLDGSTEELKEALSHKK-EKLSFSAVHMLDPATVLSLFKRMTDEDCELLNL 237

Query: 967  HDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDK- 1143
             DRPEKLI+T+IAVPP+PIRPSVF  GG  SNE+ IT  L +I   N+IL++ LQ   + 
Sbjct: 238  GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQF 297

Query: 1144 SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEY 1323
             KC   W  LQ++V +YINSD   +P S      +RG +QRLKGK GRFRGNLSGKR EY
Sbjct: 298  MKCFDCWQHLQLQVVEYINSDAPSLPESQ-----HRGLVQRLKGKTGRFRGNLSGKRTEY 352

Query: 1324 TGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRY 1503
            TGRTVISPDPNL+ITEVAIPILMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANFI  
Sbjct: 353  TGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQ 412

Query: 1504 PDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 1683
             D + +HL+Y  R+ AA +LKYG +VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 413  TDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 472

Query: 1684 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1863
            TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD
Sbjct: 473  TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532

Query: 1864 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRP 2043
            FLTSSFL+TRKD FYDR++F+L+CSY+GD M+ IDLPTPAL+KP ELWTGKQLFSVLVRP
Sbjct: 533  FLTSSFLVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRP 592

Query: 2044 NAQMRVFINLTVLEKNYSKSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSIL 2223
            NA  +VF+NLTV EK YSKS E+MCPNDGFVYFRNSELLSGQ+GK TLGNGNKDG+FSIL
Sbjct: 593  NACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSIL 652

Query: 2224 LRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDEL 2403
            +RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDV+PG+ L++QKK +I+EGY+ C +L
Sbjct: 653  VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDL 712

Query: 2404 IQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSKG 2583
            I S++KG L LQPGC+AAQTLE +IT VLNKIRE    +CM+ LHWRNSPLIMSQCGSKG
Sbjct: 713  ITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKG 772

Query: 2584 SPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT---- 2751
            SPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP  SK PAAKGFVANSFY GLT    
Sbjct: 773  SPINISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEF 832

Query: 2752 -------------ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTV 2892
                         ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TV
Sbjct: 833  FFHTMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTV 892

Query: 2893 RNASGGVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRII 3072
            RNASGG+VQFLYGDDGMDPAKMEG+ G PLNL++L++KV ATCP R Q +LSP E+L+I+
Sbjct: 893  RNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQIL 952

Query: 3073 EEKLARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIA 3252
             +KL+ HD S+  GCS+ FK+LL DF+  ++  L +T+RAL LDE + G ++  I E+IA
Sbjct: 953  NDKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGKDS-SIEESIA 1011

Query: 3253 TNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 3432
             NISGI+++QLQVFLDTC SRY SK+                EPGTQMTLKTFHFAGVAS
Sbjct: 1012 ANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1071

Query: 3433 MNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIV 3612
            MNVTLGVPRIKEIIN AK ISTPIITA L    DV SAR+VKG +EK  LGEVA+ +KIV
Sbjct: 1072 MNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIV 1131

Query: 3613 MTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKL 3792
            + S Q ++VV LDM+RI  L + +SA SV+ SIL H R       KLK+EHV V+D  KL
Sbjct: 1132 LKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRI------KLKSEHVRVIDKAKL 1185

Query: 3793 RILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKDKGKYNLLVEGTNLRAVMG 3972
            R+     D+SKL +ELH++++ LPKVIVKGI TVERAVI++   KY+LLVEGTNL AVMG
Sbjct: 1186 RVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMG 1245

Query: 3973 TPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYK 4152
            TPGVD  KT SN+I+EV  TLGIEAAR+ II EIQYTM SHGM+ID RHMMLLADLMTYK
Sbjct: 1246 TPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYK 1305

Query: 4153 GEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGT 4332
            GE+LGITR+GI KMK SVLMLASFEKT++HLFNAS++GR+D+IEGVSECIIMGIPMQ+GT
Sbjct: 1306 GEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGT 1365

Query: 4333 GILKVRQSLKQEVKLNYGLDPII 4401
            GILKVRQ L    +  Y  DPI+
Sbjct: 1366 GILKVRQRLDHLPEFKYQPDPIL 1388


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1892 bits (4902), Expect = 0.0
 Identities = 973/1409 (69%), Positives = 1128/1409 (80%), Gaps = 31/1409 (2%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            L+FTK+PYIEDVGPRKIKS+QF+TFSGAEI K AEVQV+   YYD+TRKP+   LLDP M
Sbjct: 9    LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            GPANKG  CATCH NF  CPGH+GY+NLALPVFNVGYF ++++ILK ICKSC+RILL EK
Sbjct: 69   GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 628  DRVECLKKMRNPKLEALQKSGLAKQIVKKF------NKPTNTCRRCGYVNGTVKKTGTLL 789
               + L+KMRNPKLEAL+K  L K+I+KK       NK T  C RCGY+NG+VKK  ++L
Sbjct: 129  LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR-CSRCGYLNGSVKKAVSML 187

Query: 790  GIMHDRSKIVD-GTLEECSSALSHKTVPRASVNIV-PVLNPVRVLALFKRMADEDCELLY 963
            GI+H R++  D G + E           RA  N+   +LNP RVL LF+RM+DEDCELL+
Sbjct: 188  GILHYRARSKDAGVVSEDL---------RAPYNVSNDILNPFRVLCLFQRMSDEDCELLF 238

Query: 964  LHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTD- 1140
            L +RPEKLIIT++ VPPI IRPSV  DG ++SNENDIT RL  II+ NA + QEL  ++ 
Sbjct: 239  LSNRPEKLIITNVLVPPIAIRPSVIMDG-SQSNENDITERLKRIIQQNASVSQELSTSNS 297

Query: 1141 KSKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVE 1320
            ++KCL  WD+LQ EVAQ INSD+RGIP SMQ + P  GF+QRLKGKQGRFRGNL GKRVE
Sbjct: 298  QAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVE 357

Query: 1321 YTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIR 1500
            +TGRTVISPDPNLKITEVA+PI MA++LTYPERV+ HNIEKLRQCV NGP KYPGA  +R
Sbjct: 358  FTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLR 417

Query: 1501 YPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPW 1680
            + D S+  L  S RKR A+ELKYG IVERHLEDGDVVLFNRQPSLHRMSIM HR R+MPW
Sbjct: 418  HLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW 477

Query: 1681 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 1860
            RTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQ
Sbjct: 478  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQ 537

Query: 1861 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVR 2040
            DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD +DLPTPAL+KP ELWTGKQLFSVLVR
Sbjct: 538  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVR 597

Query: 2041 PNAQMRVFINLTVLEKNYSK------SGESMCPNDGFVYFRNSELLSGQLGKATLGNGNK 2202
            P+A M+V++NLTV EK+YSK        E+MCPNDGFVYFRNSEL+SGQ+GKATLGNGNK
Sbjct: 598  PHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNK 657

Query: 2203 DGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEG 2382
            DGL+S+LLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGD L K+K+  I EG
Sbjct: 658  DGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEG 717

Query: 2383 YEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIM 2562
            Y  CD+ I  +N GNL  + GCDAAQ+LE++IT +LN IRE TA VCM+ LHWRNSPLIM
Sbjct: 718  YRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIM 777

Query: 2563 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYT 2742
            SQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF RK+K PAAKGFVANSFY+
Sbjct: 778  SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYS 837

Query: 2743 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQF 2922
            GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYD +VRNA G +VQF
Sbjct: 838  GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQF 897

Query: 2923 LYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVS 3102
             YGDDGMDPA+MEGKSG PLN ERL+LK KATCP+     LSPSE    +E++L++ D S
Sbjct: 898  CYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDAS 957

Query: 3103 AAGGCSDAFKKLLLDFMHKKMD-------TLLATKRALQLDEGY---AGNNNPDIHENIA 3252
               GCS AF   L  F++K ++       TLLA   +  +D+     + N+N  I   + 
Sbjct: 958  PECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNES-AVDKSIISSSDNDNIVIRNKVV 1016

Query: 3253 TNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 3432
             NI+G+T +QLQVFLDTC SRY +K+                EPGTQMTLKTFHFAGVAS
Sbjct: 1017 QNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1076

Query: 3433 MNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIV 3612
            MNVTLGVPRIKEIINGAK ISTPI+TA L  D++V  AR+VK  +EKT LG++AK ++IV
Sbjct: 1077 MNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIV 1136

Query: 3613 MTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKL 3792
            M+SR A I + LDME+I   +L + A  VKQ+IL   +       KLK EH+ VLDD+KL
Sbjct: 1137 MSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKL------KLKHEHINVLDDRKL 1190

Query: 3793 RILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKDKG------KYNLLVEGTN 3954
            R+L  + DR+KL F LH ++  LP V+VKGI+TV RAVI ++K       K++LLVEGT 
Sbjct: 1191 RVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTG 1250

Query: 3955 LRAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLA 4134
            L+AVMGT GVDGC T SN+IIEV++ LGIEAARKCII EI+YTM SHGMSIDIRHMMLL 
Sbjct: 1251 LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 1310

Query: 4135 DLMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGI 4314
            DLMT++GEVLGITRFGIQKM +SVLMLASFEKT+DHLFNAS NGRDDKIEGVSEC+IMGI
Sbjct: 1311 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 1370

Query: 4315 PMQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            PM +GTG+LKVRQ +    +L YG   I+
Sbjct: 1371 PMPLGTGMLKVRQRVSVPQQLPYGPPAIL 1399


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1891 bits (4898), Expect = 0.0
 Identities = 974/1408 (69%), Positives = 1128/1408 (80%), Gaps = 29/1408 (2%)
 Frame = +1

Query: 265  QLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPH 444
            Q  FTK PYIEDVGPRKIKSIQFS  S +EI KAAEVQV+ + YYD   +P+   LLDP 
Sbjct: 2    QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61

Query: 445  MGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPE 624
            MGPANK G CATCHGNF  CPGH+GYL+LALPV+NVGY ++++DILK ICKSC+RI+L E
Sbjct: 62   MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121

Query: 625  KDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNT----CRRCGYVNGTVKKTGTLLG 792
            K   + LK+MR+PK++AL+K  + K IVKK +   ++    C RCGYVNGTVKK   +LG
Sbjct: 122  KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181

Query: 793  IMHDRSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFKRMADEDCELLYLH 969
            I+HDRSKI D +LEE  SA+SH    +AS N+   VLNPV+VL+LFKRM D DCELLYL 
Sbjct: 182  IIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLS 241

Query: 970  DRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDKS- 1146
            DRPEKLIIT+IAVPPIPIRPSV  DG ++SNENDIT RL  II+ANA LRQEL  T+ + 
Sbjct: 242  DRPEKLIITNIAVPPIPIRPSVIMDG-SQSNENDITERLKRIIQANASLRQELVETNAAF 300

Query: 1147 KCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYT 1326
            KCL  W++LQVEVAQYINSD+RG+P SMQ + P  GF+QR+KGK GRFRGNLSGKRVEYT
Sbjct: 301  KCLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYT 360

Query: 1327 GRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYP 1506
            GRTVISPDPNLKITEVAIPI MA++LTYPERVS+HNIEKLRQCVRNGP KYPGA  +RYP
Sbjct: 361  GRTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYP 420

Query: 1507 DDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRT 1686
            D S   L    RKR A+ELK+G +V+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRT
Sbjct: 421  DGSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT 480

Query: 1687 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 1866
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF
Sbjct: 481  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 540

Query: 1867 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPN 2046
            LTSSFLITRKD FYDRAAFSL+CSYMGDGMD IDLPTPAL+KP ELWTGKQLFSVL+RP+
Sbjct: 541  LTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPH 600

Query: 2047 AQMRVFINLTVLEKNYSK-----------SGESMCPNDGFVYFRNSELLSGQLGKATLGN 2193
            A +RV++NL V E+NYSK             E+MCP+DGFVY RNSEL+ GQLGKATLGN
Sbjct: 601  ASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGN 660

Query: 2194 GNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARI 2373
            GNKDGL+S+LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG  LN +K   I
Sbjct: 661  GNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTI 720

Query: 2374 EEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSP 2553
               Y+ CDE IQ++N+G LK +PG DAAQTLEA +T +LN IR+ T KVCM+ELHWRNSP
Sbjct: 721  SGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSP 780

Query: 2554 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANS 2733
            LIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R SK PAAKGFVANS
Sbjct: 781  LIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANS 840

Query: 2734 FYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGV 2913
            FY+GLTATEFFFHTM GREGLVDTAVKTA+TGYMSRRLIKALEDLSIHYD TVRNASG +
Sbjct: 841  FYSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCI 900

Query: 2914 VQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARH 3093
            VQF+YGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  L    +++++EE+LA+H
Sbjct: 901  VQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKH 960

Query: 3094 DVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGIT 3273
            D   AG CS+AFKK L  F+  + + L    R ++L    A     +I E +   ISGI+
Sbjct: 961  D--PAGVCSEAFKKSLKGFLKSQTNEL---DRVMKLVNNCA--QKSEILEKVGHKISGIS 1013

Query: 3274 SQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGV 3453
             +QL+VF+ TC SRY SK                 EPGTQMTLKTFHFAGVASMN+T GV
Sbjct: 1014 DRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1073

Query: 3454 PRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQAS 3633
            PRIKEIIN AK ISTP+ITA LE D++   A+IVKG +EKT LG+VAKS+KIV+TSR AS
Sbjct: 1074 PRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSAS 1133

Query: 3634 IVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEG 3813
            +V+TLDME I   +L + A  VK+SILQ  +       KLK +HV+VLD +KL ++ P  
Sbjct: 1134 VVITLDMEIILDAELYIDANIVKESILQTPKI------KLKEQHVKVLDGRKLEVV-PPA 1186

Query: 3814 DRSKLQFELHSIRATLPKVIVKGIRTVERAVI---NKDKGK---------YNLLVEGTNL 3957
            DRS++ FELHS++  LP V+VKGI+TVER V+   NK+K           + LLVEGT L
Sbjct: 1187 DRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGL 1246

Query: 3958 RAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLAD 4137
            +AVMG  G+DG +T SN+++E+++ LGIEAARKCII EI  TM  HGM+ID RHMMLLAD
Sbjct: 1247 QAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLAD 1306

Query: 4138 LMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIP 4317
            +MT++GEVLGITRFGIQKM +S+LMLASFE+T+DHLFNA+ NGRDDKIEGV+ECIIMGIP
Sbjct: 1307 VMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIP 1366

Query: 4318 MQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            MQIGTGILKV Q +     L YG DP++
Sbjct: 1367 MQIGTGILKVIQRVDPPPMLRYGPDPVL 1394


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1885 bits (4882), Expect = 0.0
 Identities = 958/1401 (68%), Positives = 1125/1401 (80%), Gaps = 16/1401 (1%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            M  +Q+ L  TK+PYIEDVGPRKIKSI+FS FS +EI K+AEV+V+   YY+ST+KP+ N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 427  ALLDPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCA 606
             LLDP MGP NK G C TCHGNF  CPGH+GYL LALPV+NVGY  +++DILK ICK C+
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 607  RILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFN-----KPTNTCRRCGYVNGTVK 771
             ILL +K+R + LKKMRNP+ E L+KS L K++VK+ N     + T TC +CGY+NG VK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 772  KTGTLLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDC 951
            K    L I H++   +   L+E + A+S K   RASV++ P L+P  V +LFK M+DEDC
Sbjct: 181  KLQ--LKITHEQGNRI---LDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDC 235

Query: 952  ELLYLHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQ 1131
            ELLYL DRPEKL++T I VPPI IRPSVF DGG +SNENDIT RL  II+ANA L QE+ 
Sbjct: 236  ELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMS 295

Query: 1132 CTDKSKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGK 1311
             +   K L  W  LQ+EVAQYINSD+RG+PL MQ+  P  GF QRLKGKQGRFRGNLSGK
Sbjct: 296  DSSPVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGK 355

Query: 1312 RVEYTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGAN 1491
            RVEYTGRTVISPDPNLKITEVAIPILMAQ+LTYPERVS HNIEKLRQCVRNGP KYPGA 
Sbjct: 356  RVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAK 415

Query: 1492 FIRYPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARI 1671
            FIR+PD S + L ++SRKR A+ELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIMSHRARI
Sbjct: 416  FIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARI 475

Query: 1672 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVA 1851
            MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVA
Sbjct: 476  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVA 535

Query: 1852 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSV 2031
            STQDFLTSSFLITRKDTFY+RA+FSL+CSYMGD MDP DLP+PA IKP ELWTGKQLF +
Sbjct: 536  STQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHM 595

Query: 2032 LVRPNAQMRVFINLTVLEKNYSKSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGL 2211
            L+RP ++MRV++NLTV EK+YS  GE+MCP+DGFVYFRNSEL+SGQLGKATLGNGNKDGL
Sbjct: 596  LLRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGL 655

Query: 2212 FSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEA 2391
            +S+LLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG+ L KQK+  I   Y+ 
Sbjct: 656  YSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKK 715

Query: 2392 CDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQC 2571
            C++ I  +N+G L +QPGCDAAQTLEAE+T  LNK+R+   K+CM+ L WRNSPLIMSQC
Sbjct: 716  CEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQC 775

Query: 2572 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT 2751
            GSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+
Sbjct: 776  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLS 835

Query: 2752 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYG 2931
            ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRNAS  +VQF+YG
Sbjct: 836  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYG 895

Query: 2932 DDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSAAG 3111
            DDGMDP++ME K G PLN  RL++KVKATCP   + SLS SE+  I+ E+L+ HD++  G
Sbjct: 896  DDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEG 955

Query: 3112 GCSDAFKKLLLDFMHKKM-DTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQLQ 3288
            GCS+AF+  L DF+ K + +TL   + +L L E     ++    E IA NISGIT +QLQ
Sbjct: 956  GCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGITKRQLQ 1015

Query: 3289 VFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 3468
            VFL+TC SRY  KR                EPGTQMTLKTFHFAGVASMNVTLGVPRIKE
Sbjct: 1016 VFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1075

Query: 3469 IINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTL 3648
            IIN AK I+TPIIT  L    ++ +AR++K  +EKT LG+VAKS+KIV+ SR ASI ++L
Sbjct: 1076 IINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISL 1135

Query: 3649 DMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSKL 3828
            DME I   QL + AY+VKQSILQ  +       KLK   ++VL+ +KL +  P+ ++ KL
Sbjct: 1136 DMETIQVSQLCIDAYTVKQSILQTSKI------KLKEHQIKVLNPRKLEVF-PQANKDKL 1188

Query: 3829 QFELHSIRATLPKVIVKGIRTVERAVINKDKGK----------YNLLVEGTNLRAVMGTP 3978
             FELH ++  LP V+VKGI TV+RAV+NK++ K          Y LLVEGT L AVMG  
Sbjct: 1189 HFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIE 1248

Query: 3979 GVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGE 4158
            GVDG  T SN+I+EV+ TLGIEAAR  II EI YTM+SHGM+ID+RHMMLLADLMTYKGE
Sbjct: 1249 GVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGE 1308

Query: 4159 VLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGI 4338
            VLGITR G+QKMK+SVLMLASFEKT+DHLFNAS NGRDDKIEGV+ECIIMGIPM IGTG+
Sbjct: 1309 VLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGM 1368

Query: 4339 LKVRQSLKQEVKLNYGLDPII 4401
             K+RQ ++Q V+LNY  DPII
Sbjct: 1369 FKLRQRVEQ-VELNYQPDPII 1388


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1878 bits (4866), Expect = 0.0
 Identities = 953/1397 (68%), Positives = 1119/1397 (80%), Gaps = 16/1397 (1%)
 Frame = +1

Query: 259  QDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLD 438
            Q+ L  TK+PYIEDVGPRKIKSI+FS FS +EI K AEV+V+   YY+ST+KP+ N LLD
Sbjct: 5    QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 439  PHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILL 618
            P MGP NK G C TCHGNF  CPGH+GYL LALPV+NVGY  +++DILK ICK C+ ILL
Sbjct: 65   PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 619  PEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFN-----KPTNTCRRCGYVNGTVKKTGT 783
             +K+R + LKKMRNP+ E L+KS L K++VK+ N     + T TC +CGY+NG VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKLQ- 183

Query: 784  LLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLY 963
             L I H++   +   L+E + A+S K   RASV++ P ++P  V +LFK M+DEDCELLY
Sbjct: 184  -LKITHEQGNRI---LDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELLY 239

Query: 964  LHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDK 1143
            L DRPEKL++T I VPPI IRPSVF DGG +SNENDIT RL  II+ANA L QE+  +  
Sbjct: 240  LSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSP 299

Query: 1144 SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEY 1323
             K L  W  LQ+EVAQYINSD+RG+PL MQ   P  GF QRLKGKQGRFRGNLSGKRVEY
Sbjct: 300  VKSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEY 359

Query: 1324 TGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRY 1503
            TGRTVISPDPNLKITEVAIPILMAQ+LTYPERVS HNIEKLRQCVRNGP KYPGA FIR+
Sbjct: 360  TGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRH 419

Query: 1504 PDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 1683
            PD + M L +SSRKR A+ELK+GYIV+RHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 420  PDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 479

Query: 1684 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1863
            TLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQD
Sbjct: 480  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQD 539

Query: 1864 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRP 2043
            FLTSSFLITRKDTFY+RA+FSL+CSYMGD MDP DLP+PA IKP ELWTGKQLF VL+RP
Sbjct: 540  FLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRP 599

Query: 2044 NAQMRVFINLTVLEKNYSKSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSIL 2223
             ++MRV++NLT+ EK+YS  GE+MC +DGFVYFRNSEL+SGQLGKATLGNGNKDGL+S+L
Sbjct: 600  YSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVL 659

Query: 2224 LRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDEL 2403
            LRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDV PG+ L KQK+  I   Y+ C++ 
Sbjct: 660  LRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDC 719

Query: 2404 IQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSKG 2583
            I  +N+G L +QPGCDAAQTLEAE+T  LNK+R+   K+CM+ L WRNSPLIMSQCGSKG
Sbjct: 720  ITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKG 779

Query: 2584 SPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEF 2763
            SPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+ATEF
Sbjct: 780  SPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEF 839

Query: 2764 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDGM 2943
            FFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRNAS  +VQF+YGDDGM
Sbjct: 840  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGM 899

Query: 2944 DPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSAAGGCSD 3123
            DP++ME K G PLN  RL++KVKATCP   + SLS SE+  I+ E+L+ HD++  GGCS+
Sbjct: 900  DPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE 959

Query: 3124 AFKKLLLDFMHKKM-DTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQLQVFLD 3300
            AF+  L DF+ K + +TL   + +L L E     ++    E I  NISGIT +QLQVFL+
Sbjct: 960  AFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRGYLEKIVLNISGITKKQLQVFLN 1019

Query: 3301 TCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 3480
            TC SRY  KR                EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 
Sbjct: 1020 TCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA 1079

Query: 3481 AKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTLDMER 3660
            AK I+TPIITA L    ++ +AR++K  +EKT LG+VAKS+KIV+ SR ASI ++LDME 
Sbjct: 1080 AKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMET 1139

Query: 3661 IHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSKLQFEL 3840
            I   QL + AY+VKQSILQ  +       KLK   ++VL+ +KL +  P+ ++ KL FEL
Sbjct: 1140 IQVSQLCIDAYTVKQSILQTSKI------KLKEHQIKVLNPRKLEVF-PQANKDKLHFEL 1192

Query: 3841 HSIRATLPKVIVKGIRTVERAVINKDKGK----------YNLLVEGTNLRAVMGTPGVDG 3990
            H ++  LP V+VKGI TV+RAV+NK++ K          Y LLVEGT L AVMG  GVDG
Sbjct: 1193 HRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDG 1252

Query: 3991 CKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGI 4170
              T SN+I+EV+ TLGIEAAR  II EI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGI
Sbjct: 1253 RYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGI 1312

Query: 4171 TRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVR 4350
            TR G+QKMK+SVLMLASFEKT+DHLFNAS NGRDDKIEGV+ECIIMGIPM IGTG+ K+R
Sbjct: 1313 TRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLR 1372

Query: 4351 QSLKQEVKLNYGLDPII 4401
            Q + + V+LNY  DP++
Sbjct: 1373 QRV-EHVELNYQPDPMM 1388


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score = 1869 bits (4842), Expect = 0.0
 Identities = 956/1410 (67%), Positives = 1119/1410 (79%), Gaps = 25/1410 (1%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            MA  +++L  TKEP+IEDVG R+IKSI+FS  SG+EIRK+AEVQVW+S  Y+   KP+PN
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60

Query: 427  ALLDPHMGPANKGGT---CATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICK 597
             LLD  MG A+K  T   C+TCHG F  CPGHFGYL LALPVFNVG+FN ++D+LK ICK
Sbjct: 61   GLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICK 120

Query: 598  SCARILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKT 777
             C+R+LL EKDR E LKKMRNP+ +ALQKS + K++  K       C RC Y NG VKK 
Sbjct: 121  GCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCK--LTCCPRCEYKNGVVKKG 178

Query: 778  GTLLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCEL 957
               L ++HD SKI+DG  EE  +AL HK   + S + V +L+P   L+LF+RM DEDCEL
Sbjct: 179  RVGLIVIHDCSKILDGHTEELKNALQHKK-EKVSTSSVRMLDPATALSLFRRMVDEDCEL 237

Query: 958  LYLHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCT 1137
            L L DRPEKLI+T+IAVPP+PIRPSV       SNE+ ITA L +I+  N+IL++ LQ  
Sbjct: 238  LNLGDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTG 297

Query: 1138 DK-SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKR 1314
               SKC   W  LQ++V +++NSD   +P S      +RG +QRLKGK GRFRGNLSGKR
Sbjct: 298  GLFSKCFDCWQQLQLQVVEFVNSDAPCLPESQ-----HRGLVQRLKGKTGRFRGNLSGKR 352

Query: 1315 VEYTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANF 1494
             EYTGRTVISPDPNL+ITEVAIP+LMA+VLTYPERVS++N+EKLRQC+RNGP K+PGANF
Sbjct: 353  TEYTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANF 412

Query: 1495 IRYPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIM 1674
            I  PD + + L+Y  R+  A +LK GY VERHLEDGDVVLFNRQPSLHRMSIMSHRARIM
Sbjct: 413  IITPDGTKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIM 472

Query: 1675 PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 1854
            PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS
Sbjct: 473  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 532

Query: 1855 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVL 2034
            TQDFLTSSFL+TRKD FYDR++F+L+CSY+GD M+ IDLPTPALIKP ELWTGKQLFSVL
Sbjct: 533  TQDFLTSSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVL 592

Query: 2035 VRPNAQMRVFINLTVLEKNYSKSGE----------------SMCPNDGFVYFRNSELLSG 2166
            VRPNA+ +VF+NL V EK YSK  E                +MCPNDG+VYFRNSELLSG
Sbjct: 593  VRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSG 652

Query: 2167 QLGKATLGNGNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDL 2346
            Q+GKATLGNGNKDG++S+LLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG+ 
Sbjct: 653  QVGKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEH 712

Query: 2347 LNKQKKARIEEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCM 2526
            LN+QKK +I+EGY+ C +LI  + KG L L PGC+AAQTLE +ITGVLN+IR     VCM
Sbjct: 713  LNRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCM 772

Query: 2527 EELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMP 2706
            + LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFP  SK P
Sbjct: 773  DTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTP 832

Query: 2707 AAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDG 2886
            AAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD 
Sbjct: 833  AAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQ 892

Query: 2887 TVRNASGGVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLR 3066
            TVRNASGG+VQFLYGDDGMDPAKMEGK G PLNL++L++KV ATCP R   +LSP ++ +
Sbjct: 893  TVRNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQ 952

Query: 3067 IIEEKLARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHEN 3246
            ++E+KL +H  S+ GGCS+ FK+ L  F+ +++  L  T++AL LDE + G N+  I E 
Sbjct: 953  MLEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEI 1012

Query: 3247 IATNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGV 3426
            IA NISGI+++QLQVFLDTC SRY+SK                 EPGTQMTLKTFHFAGV
Sbjct: 1013 IAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGV 1072

Query: 3427 ASMNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMK 3606
            ASMNVTLGVPRIKEIIN AK ISTPIIT  L    DV SARIVKG +EK  LGEVA ++K
Sbjct: 1073 ASMNVTLGVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIK 1132

Query: 3607 IVMTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDK 3786
            IV+ S Q ++VV LDM+ I AL + +SA SV+ SIL H +       KLK+EHV V+D  
Sbjct: 1133 IVLKSSQPNLVVKLDMQLIEALHMGISADSVQLSILNHPKI------KLKSEHVRVIDRA 1186

Query: 3787 KLRILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKDK-----GKYNLLVEGT 3951
            KLRI     D+SKLQ ELH+++A LPKVIVKGI TVER VI++ K      KYNLLVEGT
Sbjct: 1187 KLRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGT 1246

Query: 3952 NLRAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLL 4131
            NL AVMGTPGVD   T SN+I+E+  TLGIEAAR+ II EIQYTM SHGM+ID+RHMMLL
Sbjct: 1247 NLLAVMGTPGVDARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLL 1306

Query: 4132 ADLMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMG 4311
            ADLMTYKGEVLGITR+GI KMK SVLMLASFEKTS+HLFNAS++GR+D+IEGVSECIIMG
Sbjct: 1307 ADLMTYKGEVLGITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMG 1366

Query: 4312 IPMQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            IPMQ+GTGILKVRQ L    +L Y  DPI+
Sbjct: 1367 IPMQLGTGILKVRQRLDHLPELKYQPDPIL 1396


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1868 bits (4839), Expect = 0.0
 Identities = 966/1407 (68%), Positives = 1109/1407 (78%), Gaps = 29/1407 (2%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            + FTK+PYIEDVGPRKI+SIQFS  S +EI KAAEVQV+   YY S R P+   LLDP M
Sbjct: 12   IAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRM 71

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            GPANK  TCATCHG F++CPGH+GYL LALPV+NVGY ++++DILK ICK C+R+LL EK
Sbjct: 72   GPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLEEK 131

Query: 628  DRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNT---CRRCGYVNGTVKKTGTLLGIM 798
               + LKKMRNPK+EAL+K+ L K IVKK +   +    C RCGY+NG VKK   +LGI+
Sbjct: 132  LCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVAVLGII 191

Query: 799  HDRSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFKRMADEDCELLYLHDR 975
            HDRSK+ + +L+E +SA++H    +A+VN+   +LNPV VL LFKRM D DCE+LYL +R
Sbjct: 192  HDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSER 250

Query: 976  PEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQEL-QCTDKSKC 1152
            PEKLIIT+IAVPPI IRPSV  DG ++SNENDIT RL  II+ NA L+QEL +     K 
Sbjct: 251  PEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQELVEANSAFKS 309

Query: 1153 LADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGR 1332
            LA W+ LQVEVAQYINSD+RG+P SMQ A P  GF+QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 310  LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 369

Query: 1333 TVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDD 1512
            TVISPDPNLKITEVAIPI MA++LTYPERVS HNIEKLRQC++NGP KYPGA  IRYPD 
Sbjct: 370  TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 429

Query: 1513 SLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLR 1692
            +   L    R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLR
Sbjct: 430  TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 489

Query: 1693 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 1872
            FNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 490  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 549

Query: 1873 SSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQ 2052
            SSFLITRKDTFYDRAAFSLMC YMGDGMD +DLPTPA++KP ELWTGKQLFSVL+RP+A 
Sbjct: 550  SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 609

Query: 2053 MRVFINLTVLEKNYSKS-----------GESMCPNDGFVYFRNSELLSGQLGKATLGNGN 2199
            MRV++NLTV EK YS              E+MCPNDGFVYFRNSEL+SGQLGKATLGNGN
Sbjct: 610  MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 669

Query: 2200 KDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEE 2379
            KDGL+S+LLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP   L+ +K   I E
Sbjct: 670  KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 729

Query: 2380 GYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLI 2559
             YE C+  I+ YN+G L+L+PGCDAAQTLEA IT +LN+IRE   K CM  L WRNSPLI
Sbjct: 730  NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 789

Query: 2560 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFY 2739
            MSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK+K PAAKGFVANSFY
Sbjct: 790  MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 849

Query: 2740 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQ 2919
            +GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD +VRNA G +VQ
Sbjct: 850  SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 909

Query: 2920 FLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDV 3099
            FLYGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  LSP +V  I+E++LA +  
Sbjct: 910  FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYGK 969

Query: 3100 SAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQ 3279
             +   CS+AF   L  F   + D L    + ++  E    ++   I E +    SGIT +
Sbjct: 970  ES---CSEAFLNSLRKFFEGQQDKL---DKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 1023

Query: 3280 QLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPR 3459
            QL+VF+ TC SRY  KR                EPGTQMTLKTFHFAGVASMN+T GVPR
Sbjct: 1024 QLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1083

Query: 3460 IKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIV 3639
            IKEIINGAK ISTPIITA LEC+++  +AR+VKG +EKT LG+VAKS+KIVMTSR ASIV
Sbjct: 1084 IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1143

Query: 3640 VTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDR 3819
            + LDME I    L ++A  VK+SI+Q  +       KLK +H++VLD +KL I  P  D+
Sbjct: 1144 IALDMETIQDAHLCINADIVKESIVQTPKI------KLKQQHIKVLDFRKLEIFPPV-DK 1196

Query: 3820 SKLQFELHSIRATLPKVIVKGIRTVERAVI------------NKDKGKYNLLVEGTNLRA 3963
            SK+ FEL+S++  LP VIVKGI+TVER VI            N +K KY LLVEGT L+A
Sbjct: 1197 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1256

Query: 3964 VMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLM 4143
            VMG  G+DGCKT SN+I EV++TLGIEAAR CII EI  TM +HGMSID RHMMLLADLM
Sbjct: 1257 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1316

Query: 4144 TYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQ 4323
            T++GEVLGITRFGIQKM +SVLMLASFEKT+DHLFNAS NGRDD+IEGVSECIIMGIPM 
Sbjct: 1317 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1376

Query: 4324 IGTGILKVRQSLKQEVKLNYGL-DPII 4401
            +GTGILK+RQ       L YG  DPI+
Sbjct: 1377 LGTGILKIRQRDAVPPMLKYGAPDPIM 1403


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1861 bits (4820), Expect = 0.0
 Identities = 946/1404 (67%), Positives = 1111/1404 (79%), Gaps = 19/1404 (1%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            MA  +++L  TKEP+IEDVG R+IKSI+FS  SG+EIRK+AEVQVW++  Y    KP+PN
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60

Query: 427  ALLDPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCA 606
             LLDP MG  NK   C+TCHG F+ CPGHFGYL LALPVFNVG+FN ++D+LK ICKSC+
Sbjct: 61   GLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 607  RILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGTL 786
            R+LL EKDR E LKKMRNP+ +ALQKS   K++  K     + C RC Y NG VKK    
Sbjct: 121  RVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCK--LSCCPRCDYRNGVVKKGRAG 178

Query: 787  LGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYL 966
            L ++HD SK++DG  EE  +AL +K   + S N V VL+P  VL+LF+RM DEDCELL L
Sbjct: 179  LIVVHDCSKVLDGHTEELKNALQNKK-EKVSANSVRVLDPATVLSLFRRMTDEDCELLNL 237

Query: 967  HDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDK- 1143
             DRPEKLI+++IAVPP+PIRPSV       SNE+ IT  L +I+  N+IL++ L      
Sbjct: 238  GDRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPF 297

Query: 1144 SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEY 1323
            +KC   W  LQ++V +Y+NSD   +P S      +RG +QRLKGK GRFRGNLSGKR EY
Sbjct: 298  TKCFDCWQYLQLQVVEYVNSDAPCLPDSQ-----HRGLVQRLKGKTGRFRGNLSGKRTEY 352

Query: 1324 TGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRY 1503
            TGRTVISPDPNLKITEVAIP+LMA+VLTYPERVS++NIEKLRQC+RNGP KYPGANF+  
Sbjct: 353  TGRTVISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQ 412

Query: 1504 PDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 1683
            PD     L+Y  R+  A +LK G IVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 413  PDGMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 472

Query: 1684 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1863
            TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD
Sbjct: 473  TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532

Query: 1864 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRP 2043
            FLTSSFL+TRKDTFYDR++F+L+CSY+GD M+ IDLPTPALIKP ELWTGKQLFSVLVRP
Sbjct: 533  FLTSSFLVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRP 592

Query: 2044 NAQMRVFINLTVLEKNYSKSG-------------ESMCPNDGFVYFRNSELLSGQLGKAT 2184
            NA  RVF+NL V EK YSK               E+MCPNDG+VYFRNSELLSGQ+GKAT
Sbjct: 593  NAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKAT 652

Query: 2185 LGNGNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKK 2364
            LGNGNKDGL+S+LLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG+ LN+QKK
Sbjct: 653  LGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKK 712

Query: 2365 ARIEEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWR 2544
              I+ GY+ C +LI  + KG L L PGC+AAQTLE  ITGVLN+IR     VCM+ LHWR
Sbjct: 713  KEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWR 772

Query: 2545 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFV 2724
            NSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF++R+LPHFP  SK PAAKGFV
Sbjct: 773  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFV 832

Query: 2725 ANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNAS 2904
            ANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNAS
Sbjct: 833  ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNAS 892

Query: 2905 GGVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKL 3084
            GG+VQFLYGDDGMDPAKMEGK G+PLNL++L++KV ATCP R   +LSP  + +++E+KL
Sbjct: 893  GGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKL 952

Query: 3085 ARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNIS 3264
             +HD S+ GGCS+ FKK L +F+ K+++ +  T+RAL L E +    +  + E++A  IS
Sbjct: 953  LQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIIS 1012

Query: 3265 GITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVT 3444
            GI+++QLQVFLDTC SRY SK+                EPGTQMTLKTFHFAGVASMNVT
Sbjct: 1013 GISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1072

Query: 3445 LGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSR 3624
            LGVPRIKEIIN A+ ISTPIITA L    DV SARIVKG +EK  LGEVA +++IV+ S 
Sbjct: 1073 LGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSS 1132

Query: 3625 QASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILS 3804
            Q +++V LDM+ I +L + +SA SV+ SIL H +       KLK+EHV V+D  KLRI  
Sbjct: 1133 QPNLIVKLDMQLIESLHMGISADSVQLSILNHPKI------KLKSEHVRVIDRAKLRIYP 1186

Query: 3805 PEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKDKGK-----YNLLVEGTNLRAVM 3969
               D+ KLQ ELH++++ LPKVIVKGI TVER VI++ K K     Y LLVEGTNL AVM
Sbjct: 1187 AGTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVM 1246

Query: 3970 GTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTY 4149
            GTPGVD  KT SN+I+E  +TLGIEAAR+ II EIQYTM SHGM+ID RHMMLLADLMTY
Sbjct: 1247 GTPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTY 1306

Query: 4150 KGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIG 4329
            KGE+LGITR+GI KMK SVLMLASFEKTS+HLFNAS++GR+D+IEGVSECIIMGIPMQ+G
Sbjct: 1307 KGEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLG 1366

Query: 4330 TGILKVRQSLKQEVKLNYGLDPII 4401
            TGILKVRQ L    +  Y  DPI+
Sbjct: 1367 TGILKVRQRLDHVPEFKYQPDPIL 1390


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1850 bits (4791), Expect = 0.0
 Identities = 947/1380 (68%), Positives = 1103/1380 (79%), Gaps = 4/1380 (0%)
 Frame = +1

Query: 274  FTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTR-KPLPNALLDPHMG 450
            FTK+P++ED+GPRKIKS+QF   SG EI KAAE QV+   YY+ T  KP  + +LD  MG
Sbjct: 10   FTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLDTRMG 69

Query: 451  PANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEKD 630
             + K G+CATC G+F +CPGHFGYL LALPVF+VGYF + I +L+ ICKSCARILL E++
Sbjct: 70   FSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILLFEEE 129

Query: 631  RVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGTLLGIMHDRS 810
            R + LKK+RNP+ E  QK+   K+++ K  K    C RCG  NG VKK G    I HDRS
Sbjct: 130  RKQFLKKIRNPRAELHQKNDFVKKVIDKC-KRVRICPRCGDYNGVVKKAGPTFRISHDRS 188

Query: 811  KI-VDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYLHDRPEKL 987
            K   D   +EC +A+S      +  N+V  L P R LALF+RM DEDC+LLYL+DRPEKL
Sbjct: 189  KANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLYLYDRPEKL 248

Query: 988  IITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDKSKCLAD-W 1164
            IIT IAVPP  IRP+     G+R NEN++T +L  I++ N  L   +   +  +   D W
Sbjct: 249  IITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDHVNKGNLPQYYMDTW 306

Query: 1165 DLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVIS 1344
             LLQV VA YINS++  +PL+ Q +    G +QRLKGKQGRFR NL GKRV++TGRTVIS
Sbjct: 307  VLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRTVIS 366

Query: 1345 PDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDDSLMH 1524
            PDPNLKITEVAIP LMAQ+LTY ERV+ HNIEKLRQCVRNGP KYPGANF+    D+L  
Sbjct: 367  PDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVISGGDTLS- 425

Query: 1525 LRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 1704
            LRY ++KR A+ELK+G  VERHLEDG++VLFNRQPSLHRMSIM HRAR+MPWRTLRFNES
Sbjct: 426  LRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNES 485

Query: 1705 VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 1884
            VCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVASTQDFLTSS+L
Sbjct: 486  VCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTSSYL 545

Query: 1885 ITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQMRVF 2064
            ITRKDTFYDRA FSLMCSYMGDGM+ IDLPTPAL+KP ELWTGKQLFSVL+RP+A M+V+
Sbjct: 546  ITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHMKVY 605

Query: 2065 INLTVLEKNYSKSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSILLRDYNAH 2244
            +NL+++EKNYSK GE+MC NDGFVY RNSEL+SGQLGKATLGNGNKDGLFS+LLRDYN+H
Sbjct: 606  VNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDYNSH 665

Query: 2245 AAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDELIQSYNKG 2424
            AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L KQK+ +I+ GY  CD  I +Y+KG
Sbjct: 666  AAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAYDKG 725

Query: 2425 NLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSKGSPINISQ 2604
             L L+PGC+AAQTLEAEIT VLN IR+  AKVCMEELHWRNSPLIMSQCGSKGSPINISQ
Sbjct: 726  KLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPINISQ 785

Query: 2605 MIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFFHTMGG 2784
            MIACVGQQSVGGRRAPNGFIDRSLPHFPR  K PAAKGFVANSFYTGLTA EFFFHTMGG
Sbjct: 786  MIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHTMGG 845

Query: 2785 REGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDGMDPAKMEG 2964
            REGLVDTAVKTADTGY+SRRLIK+LEDLS HYD TVRN+SG ++QF YGDDGMDPAKMEG
Sbjct: 846  REGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAKMEG 905

Query: 2965 KSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSAAGGCSDAFKKLLL 3144
            KSG+PLNL+RL++K+KATCPA   ASLSPSE+  I+ ++L++HD++   GCS AFK+ L 
Sbjct: 906  KSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEELS 965

Query: 3145 DFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQLQVFLDTCTSRYDS 3324
            +F+ K+MD +  T+  L LDE           E++A NISGI+ QQL+VFL+TC SRY  
Sbjct: 966  NFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCISRYHL 1025

Query: 3325 KRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTPI 3504
            KR                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+  +K ISTPI
Sbjct: 1026 KRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKKISTPI 1085

Query: 3505 ITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTLDMERIHALQLKM 3684
            ITATL CDND KSARIVKG +EKT LGEVAK++KI +T  QASI +TLDM+RI ALQ+ +
Sbjct: 1086 ITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEALQMAI 1145

Query: 3685 SAYSVKQSILQHFRAK-SKTAPKLKTEHVEVLDDKKLRILSPEGDRSKLQFELHSIRATL 3861
             A +V  SI ++ +AK S+T  KLK +    L D KL+IL PE  R ++ + LH +++ L
Sbjct: 1146 DAKTVADSISENLKAKVSRT--KLKVKPTFTLPD-KLKILLPEIGRKEVLYSLHLLQSLL 1202

Query: 3862 PKVIVKGIRTVERAVINKDKGKYNLLVEGTNLRAVMGTPGVDGCKTTSNNIIEVKETLGI 4041
            PK+IVKGI TVERAVIN  KGK NLLVEGTNL AVMGTPGVDG  TTSN+I+EV+ TLGI
Sbjct: 1203 PKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGI 1262

Query: 4042 EAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLAS 4221
            EAARK II EIQYTM SHGMSID+RHMMLLADLMT++G VLGI RFGI KMKESVLMLAS
Sbjct: 1263 EAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLMLAS 1322

Query: 4222 FEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            FE+T+D LF+A+  GR D I GVSECIIMG+PMQIGTGIL V+Q  +Q  KL YG DPII
Sbjct: 1323 FERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPDPII 1382


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1834 bits (4751), Expect = 0.0
 Identities = 940/1406 (66%), Positives = 1105/1406 (78%), Gaps = 21/1406 (1%)
 Frame = +1

Query: 247  MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 426
            MA  +++L  TKEP++EDVG R+IKS++FS FSG EIR++AE QVW++  Y +  KP+PN
Sbjct: 1    MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60

Query: 427  ALLDPHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCA 606
             LLDP MG ANK G CATCHG++  CPGHFGYL L LPVFNVG+FN+++D+LKSICK C+
Sbjct: 61   GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120

Query: 607  RILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGTL 786
            RILL EKD+ E LKKMRNP+LE L K+ L K++  K     + C  CGY+NG  KK    
Sbjct: 121  RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCK--LSRCPSCGYINGVAKKGRPG 178

Query: 787  LGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYL 966
            L I+HD SK +DG+ EE  SALSHK   + S++ V  L+P  VL+LFKRM DEDCELL L
Sbjct: 179  LLIVHDCSKTLDGSTEELRSALSHKK-EKLSISSVHTLDPATVLSLFKRMTDEDCELLNL 237

Query: 967  HDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDK- 1143
             DRPEKLIIT+IAVPP+PIRPSVF  GG  SNE+ IT  L  I+  N+IL+  LQ  D  
Sbjct: 238  GDRPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPL 297

Query: 1144 SKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEY 1323
             KC   W LLQ++V +YINSD   +     +    RG +QRLKGK GRFRGNLSGKR EY
Sbjct: 298  MKCFDCWQLLQLQVVEYINSDAPSL-----TDPQNRGLVQRLKGKTGRFRGNLSGKRTEY 352

Query: 1324 TGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRY 1503
            TGRTVISPDPNL+ITEVAIP+LMA+VLTYPERVS++NIEKLRQC+RNGP K+PGANF+  
Sbjct: 353  TGRTVISPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQ 412

Query: 1504 PDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWR 1683
            PD + +HL+Y  R+ AA +LKYG IVERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 413  PDGTKLHLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 472

Query: 1684 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1863
            TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD
Sbjct: 473  TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532

Query: 1864 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRP 2043
            FLTSSFLITRKD FYDR+ F+L+CSY+GD M+ IDLPTPA+IKP ELWTGKQLFSVLVRP
Sbjct: 533  FLTSSFLITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRP 592

Query: 2044 NAQMRVFINLTVLEKNYSKS-----------GESMCPNDGFVYFRNSELLSGQLGKATLG 2190
            NA  +V++NLTV EK Y K             E+MCPNDG+VYFRNSELLSGQ+GK TLG
Sbjct: 593  NACTKVYLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLG 652

Query: 2191 NGNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKAR 2370
            NGNKDG+FS+L+RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG+ LN++KK  
Sbjct: 653  NGNKDGMFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKT 712

Query: 2371 IEEGYEACDELIQSYNKG--NLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWR 2544
            I++GY  C +LI  Y+KG    +L PGC+ AQTLE  ++ +LN++RE   + CM  LHWR
Sbjct: 713  IDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWR 772

Query: 2545 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFV 2724
            NSPLIMSQCGSKGSPINISQM+ CVGQQSVGGRRAP+GFIDR+LPHFP  SK PAAKGFV
Sbjct: 773  NSPLIMSQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFV 832

Query: 2725 ANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNAS 2904
            ANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNAS
Sbjct: 833  ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNAS 892

Query: 2905 GGVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKL 3084
             G+VQF+YGDDGMDP KMEGK G PLNL++L++KVKATCP R    LSP  +++++ +KL
Sbjct: 893  SGIVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKL 952

Query: 3085 ARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNIS 3264
            +  D+S +GGCSD FK+LL  F   ++  L +T+R L LDE + G  +  I E IA NIS
Sbjct: 953  SEQDMS-SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERIAANIS 1011

Query: 3265 GITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVT 3444
            GI+++QLQVFLDTC SRY SK                 EPGTQMTLKTFHFAGVASMNVT
Sbjct: 1012 GISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1071

Query: 3445 LGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSR 3624
            LGVPRIKEIIN AKNISTPIITA L    D+  A  VK  VEK  LGEVA  +KIV+ S 
Sbjct: 1072 LGVPRIKEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSS 1131

Query: 3625 QASIVVTLDMERIHAL-QLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRIL 3801
            Q ++VV LDM+RI A   + +S+ SV+QSI++H +       KLK+EHV V+D  KLRI 
Sbjct: 1132 QPNLVVKLDMQRIEAQGYMGISSDSVQQSIIRHPKI------KLKSEHVRVIDGAKLRIY 1185

Query: 3802 SPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVIN------KDKGKYNLLVEGTNLRA 3963
                D+SKLQ ELH++++ LPKVIVKGI TVERAV+N      K   +YNLLVEGTNL  
Sbjct: 1186 PTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLK 1245

Query: 3964 VMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLM 4143
            V+GTPGVD  KT SN+I+EV +TLGIEAAR+ II EI+YT  S+ M ID RHMMLLADLM
Sbjct: 1246 VLGTPGVDAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLM 1305

Query: 4144 TYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQ 4323
            TYKGEVLGITRFGI KMK SVLMLASFEKT +HLFNAS++GR+D+IEGVSECIIMGIPM 
Sbjct: 1306 TYKGEVLGITRFGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMT 1365

Query: 4324 IGTGILKVRQSLKQEVKLNYGLDPII 4401
            +G+GILKVRQ L    + NY  D II
Sbjct: 1366 LGSGILKVRQRLDHLPEFNYQPDAII 1391


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1823 bits (4722), Expect = 0.0
 Identities = 941/1397 (67%), Positives = 1098/1397 (78%), Gaps = 35/1397 (2%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            +++TK+PYIEDVGPR+IKSIQFST SG++I KA+E QV    YYD+ +K +   LLD  M
Sbjct: 8    IIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRM 67

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            G  NK GTC TC G+FT CPGHFGYLNL LPV+NVGY ++++DILK ICKSC+R+L+ EK
Sbjct: 68   GAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEK 127

Query: 628  DRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNT----CRRCGYVNGTVKKTGTLLGI 795
             R   LK+MRNP+ E L+K+ L K+IVKK +   ++    C RCGY+NG VKK G+++GI
Sbjct: 128  LRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGI 187

Query: 796  MHDRSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFKRMADEDCELLYLHD 972
            +HDRSK++DG LEEC SA+ H    RA + +   +LNPVRVL+LF+RM +EDCELLYL  
Sbjct: 188  IHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQG 247

Query: 973  RPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDKS-- 1146
            RPEKLIIT IAVPPI IRPSVFT+G ++SNENDIT RL  II+ NA LR EL    ++  
Sbjct: 248  RPEKLIITTIAVPPISIRPSVFTEG-SQSNENDITERLKQIIQFNAKLRLELLEGRRTGI 306

Query: 1147 KCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYT 1326
            K L  WD LQ  V  YINSD+R IPL MQ   P  GF+QRL GKQGRFR NL+GKRVE+T
Sbjct: 307  KYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFT 365

Query: 1327 GRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYP 1506
            GRTVISPDPNLKITEVAIPI MA++LTYPERV+HHNIEKLRQCV NG  KYPGA  + YP
Sbjct: 366  GRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYP 425

Query: 1507 DDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRT 1686
            D S   L  + RKR AEELK G IV RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRT
Sbjct: 426  DGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 485

Query: 1687 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 1866
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA +LMGVQNNLCTPKNGEILVASTQDF
Sbjct: 486  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDF 545

Query: 1867 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPN 2046
            LTSSFLITRKDTFYDRAAFSLMCSYM DGMD +DLPTP+++KP ELWTGKQLFSVL+RP+
Sbjct: 546  LTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPH 605

Query: 2047 AQMRVFINLTVLEKNYS-------KSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKD 2205
            A +RV++NL + EKNYS       K  E+MCPNDG+VYFRNSEL+SGQLGKATLGNGNKD
Sbjct: 606  ANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKD 665

Query: 2206 GLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGY 2385
            GL+SILLRDYNA+AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG  L  +K   I  GY
Sbjct: 666  GLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGY 725

Query: 2386 EACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMS 2565
              C++LI  YN G L L+ GCDA QTLE EIT  LNK+RE    VCM+ELHWRNSPLIMS
Sbjct: 726  RHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMS 785

Query: 2566 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTG 2745
            QCGSKGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPRKSK PAAKGFVANSFY+G
Sbjct: 786  QCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSG 845

Query: 2746 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFL 2925
            L+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL + YD TV++A GG+VQFL
Sbjct: 846  LSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFL 905

Query: 2926 YGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSA 3105
            YGDDG+DPA MEGK+G+PLN +RL++KVKATC A     LSPS++  I++  L +H+ + 
Sbjct: 906  YGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHNGTL 965

Query: 3106 AGGCSDAFKKLLLDFM---HKKMDTLLATKRALQLD--------EGYAGNNNPDIHENIA 3252
             G CS++F+K L  F+    K+++ L+     ++++        EG  G +     E IA
Sbjct: 966  DGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKNT--EKIA 1023

Query: 3253 TNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 3432
              +SGIT +QL+VFL TC  RY  KR                EPGTQMTLKTFHFAGVAS
Sbjct: 1024 QKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1083

Query: 3433 MNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIV 3612
            MN+T GVPRIKEIINGAK ISTPIIT  LE +++V +ARI+KG ++KT LG+VAKS+KIV
Sbjct: 1084 MNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIV 1143

Query: 3613 MTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKL 3792
            MTSR AS+ VTLDM+ I   QL + A  V++ IL+  + K       K + + VL+D KL
Sbjct: 1144 MTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKR------KLQRINVLEDGKL 1197

Query: 3793 RILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVI--------NKDKG--KYNLLV 3942
             +  P GDR+KL FELHS++  LP V+VKGI+TVER VI          D+G  KYN+ V
Sbjct: 1198 EVF-PGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFV 1256

Query: 3943 EGTNLRAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHM 4122
            EG  L+AVMGT GVDG KT SN+IIEV+ETLGIEAARKCII EI+ TM SHGMSIDIRHM
Sbjct: 1257 EGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHM 1316

Query: 4123 MLLADLMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECI 4302
            MLLAD+MT +G VLGITRFGIQKM +SVLMLASFEKTSDHLFNAS  G+DDKIEGVSECI
Sbjct: 1317 MLLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECI 1376

Query: 4303 IMGIPMQIGTGILKVRQ 4353
            IMGIP+ IGTG+LK++Q
Sbjct: 1377 IMGIPVAIGTGVLKIQQ 1393


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1810 bits (4688), Expect = 0.0
 Identities = 950/1422 (66%), Positives = 1090/1422 (76%), Gaps = 44/1422 (3%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            + FTK+PYIEDVGPRKI+SIQFS  S +EI KAAEVQV+   YY S R P+   LLDP M
Sbjct: 12   IAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDPRM 71

Query: 448  ---------------GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDIL 582
                           GPANK  TCATCHG F++CPGH+GYL LALPV+NVGY ++++DIL
Sbjct: 72   EKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDIL 131

Query: 583  KSICKSCARILLPEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNT---CRRCGY 753
            K ICK C+R+LL EK   + LKKMRNPK+EAL+K+ L K IVKK +   +    C RCGY
Sbjct: 132  KCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGY 191

Query: 754  VNGTVKKTGTLLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFK 930
            +NG VKK   +LGI+HDRSK+ + +L+E +SA++H    +A+VN+   +LNPV VL LFK
Sbjct: 192  INGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFK 250

Query: 931  RMADEDCELLYLHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANA 1110
            RM D DCE+LYL +RPEKLIIT+IAVPPI IRPSV  DG ++SNENDIT RL  II+ NA
Sbjct: 251  RMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNA 309

Query: 1111 ILRQEL-QCTDKSKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGR 1287
             L+QEL +     K LA W+ LQVEVAQYINSD+RG+P SMQ A P  GF+QRLKGKQGR
Sbjct: 310  SLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGR 369

Query: 1288 FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNG 1467
            FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI MA++LTYPERVS HNIEKLRQC++NG
Sbjct: 370  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNG 429

Query: 1468 PQKYPGANFIRYPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMS 1647
            P KYPGA  IRYPD +   L    R + A ELK G IV+RHLEDGDVVLFNRQPSLHRMS
Sbjct: 430  PDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMS 489

Query: 1648 IMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTP 1827
            IM HRARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTP
Sbjct: 490  IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTP 549

Query: 1828 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELW 2007
            KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD +DLPTPA++KP ELW
Sbjct: 550  KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELW 609

Query: 2008 TGKQLFSVLVRPNAQMRVFINLTVLEKNYSKS-----------GESMCPNDGFVYFRNSE 2154
            TGKQLFSVL+RP+A MRV++NLTV EK YS              E+MCPNDGFVYFRNSE
Sbjct: 610  TGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSE 669

Query: 2155 LLSGQLGKATLGNGNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQ 2334
            L+SGQLGKATLG                      CMNRLAKLSARWIGNHGFSIGIDDVQ
Sbjct: 670  LISGQLGKATLG----------------------CMNRLAKLSARWIGNHGFSIGIDDVQ 707

Query: 2335 PGDLLNKQKKARIEEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTA 2514
            P   L+ +K   I E YE C+  I+ YN+G L+L+PGCDAAQTLEA IT +LN+IRE   
Sbjct: 708  PKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG 767

Query: 2515 KVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRK 2694
            K CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK
Sbjct: 768  KACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRK 827

Query: 2695 SKMPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 2874
            +K PAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI
Sbjct: 828  AKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI 887

Query: 2875 HYDGTVRNASGGVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPS 3054
             YD +VRNA G +VQFLYGDDGMDPA MEGKSG PLN +RL +KVKATCP   Q  LSP 
Sbjct: 888  QYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQ 947

Query: 3055 EVLRIIEEKLARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPD 3234
            +V  I+E++LA +   +   CS+AF   L  F   + D L    + ++  E    ++   
Sbjct: 948  QVSEIVEKQLAAYGKES---CSEAFLNSLRKFFEGQQDKL---DKKIKFVEDIGWDDKSQ 1001

Query: 3235 IHENIATNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFH 3414
            I E +    SGIT +QL+VF+ TC SRY  KR                EPGTQMTLKTFH
Sbjct: 1002 ILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFH 1061

Query: 3415 FAGVASMNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVA 3594
            FAGVASMN+T GVPRIKEIINGAK ISTPIITA LEC+++  +AR+VKG +EKT LG+VA
Sbjct: 1062 FAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVA 1121

Query: 3595 KSMKIVMTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEV 3774
            KS+KIVMTSR ASIV+ LDME I    L ++A  VK+SI+Q  +       KLK +H++V
Sbjct: 1122 KSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKI------KLKQQHIKV 1175

Query: 3775 LDDKKLRILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVI------------NKD 3918
            LD +KL I  P  D+SK+ FEL+S++  LP VIVKGI+TVER VI            N +
Sbjct: 1176 LDFRKLEIFPPV-DKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1234

Query: 3919 KGKYNLLVEGTNLRAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHG 4098
            K KY LLVEGT L+AVMG  G+DGCKT SN+I EV++TLGIEAAR CII EI  TM +HG
Sbjct: 1235 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1294

Query: 4099 MSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDK 4278
            MSID RHMMLLADLMT++GEVLGITRFGIQKM +SVLMLASFEKT+DHLFNAS NGRDD+
Sbjct: 1295 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1354

Query: 4279 IEGVSECIIMGIPMQIGTGILKVRQSLKQEVKLNYGL-DPII 4401
            IEGVSECIIMGIPM +GTGILK+RQ       L YG  DPI+
Sbjct: 1355 IEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1396


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1805 bits (4675), Expect = 0.0
 Identities = 946/1391 (68%), Positives = 1095/1391 (78%), Gaps = 38/1391 (2%)
 Frame = +1

Query: 343  SGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHMGPANK-GGTCATCHGNFTSCPGHFG 519
            SGAEI KAAE QV    YYDSTRKP+   LLDP +GPA K    C TC  +F  CPGHFG
Sbjct: 3    SGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFG 62

Query: 520  YLNLALPVFNVGYFNSLIDILKSICKSCARILLPEKDRVECLKKMRNPKLEALQKSGLAK 699
            YLNL LPVFNVGY ++++DILK ICKSC+RIL  EK     LKKMRNP++E L+KS L K
Sbjct: 63   YLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSELVK 122

Query: 700  QIVKKFNKPTNT----CRRCGYVNGTVKKTGTLLGIMHDRSKIVDGTLEECSSALSHKTV 867
            +IVKK +  T+     C RCG +NG VKK G++L I+HDR+K+VDG LEEC SA++H   
Sbjct: 123  KIVKKCSSMTSNKAVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHTKE 182

Query: 868  PRASVNIVP-VLNPVRVLALFKRMADEDCELLYLHDRPEKLIITDIAVPPIPIRPSVFTD 1044
             RA +++   +L PV+VL+LFKR+ +EDCE+L L+DRPEKLIIT+IAVPPI IRPSVFTD
Sbjct: 183  SRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVFTD 242

Query: 1045 GGARSNENDITARLSTIIRANAILRQELQCTDKS--KCLADWDLLQVEVAQYINSDIRGI 1218
            G  +SNENDIT RL  II+ANA LR EL     S  K L  WD LQ  VA Y+NSD+R +
Sbjct: 243  G-LQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDVR-V 300

Query: 1219 PLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQ 1398
            P +++   P  GF+QRLKGKQGRFRGNLSGKRVE+TGRTVISPDPNLKITEVAIPI MA+
Sbjct: 301  PNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMAR 360

Query: 1399 VLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDDSLMHLRYSSRKRAAEELKYGYI 1578
            +L+YPERVSHHNIEKLRQ V NGPQKYPGA+ +RYPD S   L  S RK  AEEL +G I
Sbjct: 361  ILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFGCI 420

Query: 1579 VERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHV 1758
            V+RHLEDGDVVLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMN+HV
Sbjct: 421  VDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 480

Query: 1759 PQTEEARTEALMLMGV-QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC 1935
            PQTEEARTEAL+LMGV QNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRAAFSLMC
Sbjct: 481  PQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLMC 540

Query: 1936 SYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQMRVFINLTVLEKNYSK----- 2100
            SYM DGMD IDLPTPA++KP ELWTGKQLFSVL+RPNA +RV++NL V EK YSK     
Sbjct: 541  SYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGD 600

Query: 2101 --SGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSILLRDYNAHAAAACMNRLA 2274
                E+MCPNDGFVY RNSEL+SGQLGKATLGNGNKDGL+SILLRDYN HAAA CMNRLA
Sbjct: 601  KREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLA 660

Query: 2275 KLS--ARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDELIQSYNKGNLKLQPGC 2448
            KL   ARWIGNHGFSIGIDDVQPG  L   K   I  GY+ CD+LI+ YN+G L L+PGC
Sbjct: 661  KLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGC 720

Query: 2449 DAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQ 2628
            DA QTLE+EIT  LNK+RE    VCM+ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQ
Sbjct: 721  DATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQ 780

Query: 2629 SVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTA 2808
            SVGGRRAP+GFIDRSLPHFPRKSK PAAKGFVANSFY+GL ATEFFFHTM GREGLVDTA
Sbjct: 781  SVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVDTA 840

Query: 2809 VKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDGMDPAKMEGKSGIPLNL 2988
            VKTADTGYMSRRLIK LEDLSI YD TVRNASG +VQFLYGDDG+DPA MEGK G+PLNL
Sbjct: 841  VKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNL 900

Query: 2989 ERLYLKVKATCPARAQASLSPSEVLRIIEEKLARHDVSAAGGCSDAFKKLLLDFM---HK 3159
            +RL+ KVKATCP R +  LSP ++  ++E  L +HD++  G CS+AFKK L  F+    K
Sbjct: 901  DRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAK 960

Query: 3160 KMDTLLATKRALQLDEGYAGN-------NNPDIHENIATNISGITSQQLQVFLDTCTSRY 3318
            ++++++  K A  +++  + N        N  I E +A  I G++ +Q++VF+ TC +RY
Sbjct: 961  RLESMM--KLADGVEDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRY 1018

Query: 3319 DSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNIST 3498
              KR                EPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK IST
Sbjct: 1019 LWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKIST 1078

Query: 3499 PIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTLDMERIHALQL 3678
            PIITA LE + +V +ARI KG ++KT LG+VAKS+KIVMTSR AS+V+TLDM+ I   QL
Sbjct: 1079 PIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQL 1138

Query: 3679 KMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSKLQFELHSIRAT 3858
             + A  VK++IL+  R       KLK +H++VLD +KL ++ P GDR ++ FELH+++  
Sbjct: 1139 SLDANIVKEAILRTPRI------KLKPQHIKVLDTRKLEVI-PLGDRERVHFELHNLKNL 1191

Query: 3859 LPKVIVKGIRTVERAVI--NKDKGK--------YNLLVEGTNLRAVMGTPGVDGCKTTSN 4008
            LP +IV+GI+TVERAVI   K  GK        YN+LVEG  L  VMGT GVDGCKTTSN
Sbjct: 1192 LPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTTSN 1251

Query: 4009 NIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQ 4188
            +++EV++ LGIEAARKCII EI  TM  HGMSIDIRHMMLL DLMT+KGEVLGITRFGIQ
Sbjct: 1252 HVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITRFGIQ 1311

Query: 4189 KMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQSLKQE 4368
            KM +SVLMLASFEKT+DHL++A+  GRDDKIEGVSECIIMGIPMQIGTGILKV+Q +   
Sbjct: 1312 KMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRVDPP 1371

Query: 4369 VKLNYGLDPII 4401
              LNYG D II
Sbjct: 1372 PVLNYGSDSII 1382


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score = 1787 bits (4628), Expect = 0.0
 Identities = 930/1409 (66%), Positives = 1085/1409 (77%), Gaps = 33/1409 (2%)
 Frame = +1

Query: 274  FTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHMGP 453
            FTK PY+EDVGPR+I+SIQFSTFS AE+ KA EV+V    YYD  RKP+ N LLD  MGP
Sbjct: 9    FTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQRMGP 68

Query: 454  ANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEKDR 633
            ANK   C TC G F  CPGH+GYL LALPV+NVG+F ++IDILK ICK+C+R+LL +KD 
Sbjct: 69   ANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLADKDH 128

Query: 634  VECLKKMRNPKLEALQKSGLAKQIVKKFN-----KPTNTCRRCGYVNGTVKKTGTLLGIM 798
               LK+MRNPK E L+K  + K++VKK N     K    C RCGY+NG VKK    L I 
Sbjct: 129  QVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPLKIQ 188

Query: 799  HDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLYLHDRP 978
            HDR+K+VD  L+E  SAL+H    + +  ++  ++P     L + M DEDCELLYLHDRP
Sbjct: 189  HDRAKVVDNCLDERRSALAHTKDIKGNPVVISTIDPKTAYHLLENMLDEDCELLYLHDRP 248

Query: 979  EKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQEL--QCTDKSKC 1152
            EKLI+T+I VPPI IRPSVF+   A SNENDIT+RL  II+ NA + QE+  Q +     
Sbjct: 249  EKLIVTNILVPPIAIRPSVFSTR-AMSNENDITSRLKQIIQINAAVLQEMSDQSSQSQSL 307

Query: 1153 LADWDLLQVEVAQYINSDIRGIPLSMQSAT-PYRGFIQRLKGKQGRFRGNLSGKRVEYTG 1329
              +WD LQVEVAQYINSD+R +PL     T P  GF+QRLKGKQGRFRGNLSGKRVE+TG
Sbjct: 308  TNNWDSLQVEVAQYINSDVR-VPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEFTG 366

Query: 1330 RTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPD 1509
            RTVISPDPNLKI EVA+PILMAQ+L+YPERVSHHNIE+LRQCVRNGP KYPGA FI++PD
Sbjct: 367  RTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKHPD 426

Query: 1510 DSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 1689
             + + L    R RAA++LKYGYIV RHL+DGD++LFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 427  GTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWRTL 486

Query: 1690 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1869
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 487  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 546

Query: 1870 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNA 2049
            TSS+LITRKDTFYDRA+FSL+CSYMGD MDPIDLPTPAL+KP ELWTGKQLFS+L+RP+A
Sbjct: 547  TSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRPHA 606

Query: 2050 QMRVFINLTVLEKNYSKSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSILLR 2229
            +MRV++NLTV EKNY KSGE+MCP DGFVY RNSEL+SGQLGKATLGNG+KDGL+S+LLR
Sbjct: 607  KMRVYVNLTVAEKNYGKSGETMCPKDGFVYIRNSELISGQLGKATLGNGSKDGLYSVLLR 666

Query: 2230 DYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDELIQ 2409
            DY+AHAAA CMNRLAKLSARWIGNHGFSIGI+DVQPG +LNK+KK  I++GY  C + I 
Sbjct: 667  DYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVQPGIVLNKEKKVTIDKGYGQCIDYIG 726

Query: 2410 SYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSKGSP 2589
            SY  G+L L PGC+ A+TLEA ITG LN IRE TA VCM  LHWRNSPLIMSQC      
Sbjct: 727  SYKSGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNNLHWRNSPLIMSQCDG---- 782

Query: 2590 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATEFFF 2769
                   ACVGQQSVGGRRAPNGF+DR+LPHF R++K P AKGFV NSFYTGL+ATEFFF
Sbjct: 783  -------ACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFF 835

Query: 2770 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDGMDP 2949
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+HYDGTVRNAS  +VQF+YG D MDP
Sbjct: 836  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDGTVRNASVCIVQFVYGGDAMDP 895

Query: 2950 AKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLR----IIEEKLARHDVSAAGGC 3117
             +ME KSG+PLN ERL++K KATCPA  Q SLS  E+ +    II ++L+    +  G  
Sbjct: 896  GQMEEKSGLPLNFERLFMKAKATCPAVEQKSLSIEEIDKTMDEIIGDRLSESTATPEGES 955

Query: 3118 SDAFK-------------KLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATN 3258
            S AF                L  F+ KK      +   L+L+     + +    E IA+N
Sbjct: 956  SQAFSASSNKEGGMETFDNSLRKFIQKKYPN---SDLMLKLNGKEHSDEDKGYLEKIASN 1012

Query: 3259 ISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMN 3438
            I G+T QQL VFL+TC SRY  K+                EPGTQMTLKTFHFAGVASMN
Sbjct: 1013 ICGVTRQQLMVFLETCISRYRLKKIEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 1072

Query: 3439 VTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMT 3618
            VTLGVPRIKEIIN AK I+TPII+  L+ DN+   A+IVKG +EKT L +VAKS+K    
Sbjct: 1073 VTLGVPRIKEIINAAKKINTPIISTALQSDNNEIIAKIVKGRIEKTLLEQVAKSIKTSQA 1132

Query: 3619 SRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRI 3798
            SR  SIV+TLDM +I    L + AY+VK+SIL+  R       KLK + V+VLD +KL I
Sbjct: 1133 SRSTSIVITLDMTKIQGAHLSVDAYTVKESILKTKRM------KLKEQQVKVLDHRKLEI 1186

Query: 3799 LSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVI-----NKDKG---KYNLLVEGTN 3954
            +  + D++KLQFELH ++  + KV+VKGI TVERA+I      KD     K  LLVEGT 
Sbjct: 1187 VM-QADKTKLQFELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANKKMKLLVEGTG 1245

Query: 3955 LRAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLA 4134
            L +VMG  GV+G KTTSN+IIEV+  LGIEAARK II EIQYTM+SHGM+IDIRHMMLLA
Sbjct: 1246 LLSVMGIEGVEGRKTTSNHIIEVQHILGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLA 1305

Query: 4135 DLMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGI 4314
            DLMT KGEVLGITR+G+QKMK+SVLMLASFE+TSDHLFNAS NGR DKIEGVSECIIMGI
Sbjct: 1306 DLMTSKGEVLGITRYGVQKMKDSVLMLASFERTSDHLFNASVNGRVDKIEGVSECIIMGI 1365

Query: 4315 PMQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            P+QIGTG+LKVRQ++K  ++L YG DPII
Sbjct: 1366 PVQIGTGMLKVRQNVK-PIELTYGPDPII 1393


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1784 bits (4620), Expect = 0.0
 Identities = 921/1401 (65%), Positives = 1088/1401 (77%), Gaps = 23/1401 (1%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            + FTKEP++ED GPRKIK+++FST S +EI K AEVQVW   YYDS +KP+   LLDP M
Sbjct: 9    ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            GPANK   CATC GNF  CPGH+GYLNLALPVFNVGY +++++ILK ICK CARILL E 
Sbjct: 69   GPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDED 128

Query: 628  DRVECLKKMRNPKLEALQKSGLAK-QIVKKFNKPTNTCRRCGYVNGTVKKTGTLLGIMHD 804
             R + LKKMR+ K   L K    K +++K  +K  N C RCGY+NG+VKK    L I+HD
Sbjct: 129  TRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVN-CPRCGYINGSVKKLPASLTIIHD 187

Query: 805  RSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFKRMADEDCELLYLHDRPE 981
             SK  +  +EE  SALS     RA+ N+   +LNP +VL+LFKRM DEDCELLY+ +RPE
Sbjct: 188  CSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPE 247

Query: 982  KLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQ-CTDKSKCLA 1158
            KLI+T++ VPPI IRPSV  D    SNENDIT RL  II+ANA+LRQELQ  T  SK L 
Sbjct: 248  KLIMTNVVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESTFSSKFLD 306

Query: 1159 DWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTV 1338
             WD+LQ EVAQ+INSD+RGIP  MQ      GF+QRLKGK GRFRGNLSGKRVEYTGRTV
Sbjct: 307  GWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTV 366

Query: 1339 ISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDDSL 1518
            ISPDPNLKI+EVAIPI MA++LTYPERV+HHNIEKLRQCVRNGP KYPGA  +R      
Sbjct: 367  ISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHS 426

Query: 1519 MHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 1698
              L+   RKRAA+EL+ G IV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFN
Sbjct: 427  WSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 486

Query: 1699 ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 1878
            ESVCNPYNADFDGDEMNLHVPQTEEARTEA++LMGV+NNLCTPKNGEILVASTQDFLTSS
Sbjct: 487  ESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSS 546

Query: 1879 FLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQMR 2058
            FLITRKDTFYDR+ FSL+CSY+GDGMDPIDLPTPA++KP ELW+GKQLFS+++RP+A MR
Sbjct: 547  FLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMR 606

Query: 2059 VFINLTVLEKNYSK---------SGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGL 2211
            V++NLTV E+NY++           +++CPNDGFVYFRNSEL+SGQ+GK TLGNGNKDGL
Sbjct: 607  VYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGL 666

Query: 2212 FSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEA 2391
            FS+LLRDY AHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP ++L  +K   I EGY  
Sbjct: 667  FSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRE 726

Query: 2392 CDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQC 2571
            CD+ I+++NKG L+L  GCDAAQTLE  ITGVLN +R+T  KVCM+ LHWRNSPLIMSQC
Sbjct: 727  CDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQC 786

Query: 2572 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLT 2751
            GSKGS INISQM+ACVGQQSVGGRR PNGFIDRSLPHFPRKSK PAAKGFVANSFY+GL+
Sbjct: 787  GSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLS 846

Query: 2752 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYG 2931
            ATEFFFHTMGGREGLVDTAVKTADTGYMSR+L+K+LEDL +HYD TVRNA G +VQF YG
Sbjct: 847  ATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQFCYG 906

Query: 2932 DDGMDPAKMEGKSGIPLNLERLYLKVKATCP-ARAQASLSPSEVLRIIEEKLARHDVSAA 3108
            DDGMDPA MEGK+G PLN ERL+LK KA CP       LS S+V +++ EKL+  D+S  
Sbjct: 907  DDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDMSRL 966

Query: 3109 G-------GCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISG 3267
                    G S  F + L  F+            A   +EG+   ++ ++ +     ISG
Sbjct: 967  AEKGVFEVGFSADFVESLQSFI---------KDNAKLTEEGFTDEHSQNL-KKFGQRISG 1016

Query: 3268 ITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTL 3447
            IT +QL VFL+ C SRY SK+                EPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1017 ITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTL 1076

Query: 3448 GVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQ 3627
            GVPR+KEI+NG K ISTPIITA LE D++  +ARIVKG +EKT LG+VAKS+K+VMTSR 
Sbjct: 1077 GVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRS 1136

Query: 3628 ASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSP 3807
            AS+V+TLDM+RI    L + A  VK+SIL+      KT  KLK EH+++LD KKL ++  
Sbjct: 1137 ASVVITLDMKRIQDAHLNIDANIVKESILR----TKKT--KLKPEHIKILDIKKLEVVPQ 1190

Query: 3808 EGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKD--KGKYNLLVEGTNLRAVMGTPG 3981
            + DRSK+ F+LH ++  LP V+VKGI+TV+R VI+KD    K+ LLVEGT  R VMG  G
Sbjct: 1191 DVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKDTKAEKFRLLVEGTGFREVMGVEG 1250

Query: 3982 VDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMA-SHGMSIDIRHMMLLADLMTYKGE 4158
            +DG KT SN+I EV++TLGIEAAR+ I+ EI+YTM  +HGM+IDIRHMMLLAD+MT  G 
Sbjct: 1251 IDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGH 1310

Query: 4159 VLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGI 4338
            +LGI RFGI KM +SVLMLASFE+T+D LF AS  GRDD I GVSE IIMGIP+QIGTG+
Sbjct: 1311 ILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGM 1370

Query: 4339 LKVRQSLKQEVKLNYGLDPII 4401
            +KV+Q L    +L +G  PI+
Sbjct: 1371 IKVKQRL-DPPELPHGTSPIL 1390


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1769 bits (4581), Expect = 0.0
 Identities = 908/1395 (65%), Positives = 1079/1395 (77%), Gaps = 17/1395 (1%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            + FTKEP++ED GPRKIK+++FS  S +EI K  EVQVW   YYDS +KP+   LLDP M
Sbjct: 9    ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            GPANK   CATCHGNF  CPGH+GYLNLALPVFNVGY  S+++ILK ICK CARILL E 
Sbjct: 69   GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128

Query: 628  DRVECLKKMRNPKLEALQKSGLAK-QIVKKFNKPTNTCRRCGYVNGTVKKTGTLLGIMHD 804
             R + LKKMR+ K   L K    K +I+K  +K  N C RCGY+NG+VKK    L IMHD
Sbjct: 129  TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVN-CPRCGYINGSVKKLPASLIIMHD 187

Query: 805  RSKIVDGTLEECSSALSHKTVPRASVNIVP-VLNPVRVLALFKRMADEDCELLYLHDRPE 981
             SK  +  +EE  S LS     +A+ N+   +LNP +VL+LF++M DEDCELLY+ +RPE
Sbjct: 188  CSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPE 247

Query: 982  KLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTD-KSKCLA 1158
            KLIIT+I VPPI IRPSV  D    SNENDIT RL  II+ANA+LRQELQ +   SK L 
Sbjct: 248  KLIITNIVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESSVSSKFLD 306

Query: 1159 DWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTV 1338
             W++LQ EVAQ+INS++RGIP  MQS     GF+QRLKGK GRFRGNLSGKRVEYTGRTV
Sbjct: 307  GWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTV 366

Query: 1339 ISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDDSL 1518
            ISPDPNLKI+EVAIPILMA +LTYPERV+HHNIEKLRQCVRNGP KYPGA  +R      
Sbjct: 367  ISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHS 426

Query: 1519 MHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 1698
              L+   RKRAA+EL+ G IV+RHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFN
Sbjct: 427  WSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 486

Query: 1699 ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 1878
            ESVCNPYNADFDGDEMNLHVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 487  ESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSS 546

Query: 1879 FLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQMR 2058
            FL+TRKDTFYDR+AF+ +C+++GDG+D IDLPTPA++KP ELW+GKQLFS+L+RP+A  +
Sbjct: 547  FLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFK 606

Query: 2059 VFINLTVLEKNYSKSGE------SMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSI 2220
            V++NLTV EK Y+K  +      ++CPNDGFVYFRN+EL+SGQ+GK TLGNGNKDGLFS+
Sbjct: 607  VYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSV 666

Query: 2221 LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDE 2400
            LLRDY AHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP ++L K+K   + EGY+ CD 
Sbjct: 667  LLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDN 726

Query: 2401 LIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSK 2580
             IQ++NKG L+L  GCDA QTLE +ITGVLN +R+   KVCM+ LHWRNSPLIMSQCGSK
Sbjct: 727  HIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSK 786

Query: 2581 GSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATE 2760
            GSPINISQM+ACVGQQSVGGRRAPNGF+DRSLPHFP  +K PAAKGFVANSFY+GL+ATE
Sbjct: 787  GSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATE 846

Query: 2761 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDG 2940
            FFFHTMGGREGLVDTAVKTADTGYMSR+L+K++EDL +HYD TVRNA G +VQF YGDDG
Sbjct: 847  FFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDG 906

Query: 2941 MDPAKMEGKSGIPLNLERLYLKVKATCPARAQAS-LSPSEVLRIIEEKLARHDVSAAGGC 3117
            MDP  MEGK+G PLN ERL+LK KA CP +     LS S+V ++++EKL+   VS     
Sbjct: 907  MDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLSEFGVSREVEK 966

Query: 3118 SDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISGITSQQLQVFL 3297
                     DF+      +   K   +L E    ++N  I +     ISGIT  QL+VFL
Sbjct: 967  GVLEVGFSADFVQSLQSFI---KDNTKLTEETFTDDNSQILKKFGERISGITRAQLEVFL 1023

Query: 3298 DTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 3477
            + C SRY SK+                EPGTQMTLKTFHFAGVASMNVTLGVPR+KEI+N
Sbjct: 1024 NICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMN 1083

Query: 3478 GAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQASIVVTLDME 3657
            G K ISTPIITA LE  +   +ARIVKG +EKT LG+VAKS+K+V+TSR AS+V+TLDME
Sbjct: 1084 GNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLASVVITLDME 1143

Query: 3658 RIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILSPEGDRSKLQFE 3837
            RI    L + A  VK+SILQ  +A      KLK EH+++LD KKLR++  +GDRSKL F+
Sbjct: 1144 RIQDAHLNIDANIVKESILQTKKA------KLKPEHIKILDVKKLRVVPQDGDRSKLHFQ 1197

Query: 3838 LHSIRATLPKVIVKGIRTVERAVINKDKG------KYNLLVEGTNLRAVMGTPGVDGCKT 3999
            L+ ++  LP V+VKGI+T +R VI+K++       K+ LLVEGT  R VMG  GVDGCKT
Sbjct: 1198 LNYLKNLLPSVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMGVEGVDGCKT 1257

Query: 4000 TSNNIIEVKETLGIEAARKCIISEIQYTMA-SHGMSIDIRHMMLLADLMTYKGEVLGITR 4176
             SN+I EV++TLGIEAAR+CI+ EI+Y M  +HGM+ID RHMMLLAD+MT  G +LGI R
Sbjct: 1258 VSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILGINR 1317

Query: 4177 FGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQIGTGILKVRQS 4356
            FGI KM +SVLMLASFE+T+D LF AS  GRDD I GVSE IIMGIP+ IGTG++KV+Q 
Sbjct: 1318 FGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKVKQR 1377

Query: 4357 LKQEVKLNYGLDPII 4401
            L+    L +G  PI+
Sbjct: 1378 LELP-DLPHGASPIL 1391


>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1400

 Score = 1751 bits (4535), Expect = 0.0
 Identities = 901/1405 (64%), Positives = 1078/1405 (76%), Gaps = 24/1405 (1%)
 Frame = +1

Query: 259  QDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLD 438
            +++L  TKEP+++D  P++IKS++F T SG EIR++A  QVW++  YDS+ KP+PN LLD
Sbjct: 8    EEKLRCTKEPFVDDASPQRIKSMRFCTLSGKEIRQSAAAQVWNTRIYDSSLKPVPNGLLD 67

Query: 439  PHMGPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILL 618
            P MG ++K G CATCHG++T CPGHFGY+ LALPVFNVGYFN ++ +LK ICK C+R+LL
Sbjct: 68   PRMGASDKCGECATCHGSYTECPGHFGYIKLALPVFNVGYFNKILAVLKCICKGCSRVLL 127

Query: 619  PEKDRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNTCRRCGYVNGTVKKTGT----- 783
             E    E LKKMRNP+ +   +S +  ++  K     + C  CGY+NG VKK G      
Sbjct: 128  TENIHQEFLKKMRNPRAD---RSSIMIKVRDKCRP--SRCSWCGYINGIVKKEGRRALKQ 182

Query: 784  LLGIMHDRSKIVDGTLEECSSALSHKTVPRASVNIVPVLNPVRVLALFKRMADEDCELLY 963
             + I+HD SK +D + EE  S LSHK   + S+  V  L+PV VL+LF+R+ DEDCELL 
Sbjct: 183  TVVIVHDCSKNLDASTEEVRSVLSHKK-EKLSITSVHTLDPVTVLSLFRRITDEDCELLA 241

Query: 964  LHDRPEKLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTD- 1140
            + +RPE LIITDIAVPP+PIRPS F  G   SNE+ IT+ L  I+ AN+ L+  +Q    
Sbjct: 242  IGERPENLIITDIAVPPVPIRPSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQV 301

Query: 1141 KSKCLADWDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVE 1320
              KC   W+ LQ  V +YINSD   +  S        G IQRLKGK GRFRGNLSGKR E
Sbjct: 302  PMKCFTWWEQLQDNVIEYINSDASSLQDSKDC-----GLIQRLKGKTGRFRGNLSGKRTE 356

Query: 1321 YTGRTVISPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIR 1500
            +TGRTVISPDPNL+ITEVAIP+LMA+VLTYPERV+++NIEKLRQC+RNGP K+PGANFI 
Sbjct: 357  HTGRTVISPDPNLRITEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPGANFII 416

Query: 1501 YPDDSLMHLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPW 1680
             PD++ +HL Y  R RAA +LKYG IVERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPW
Sbjct: 417  QPDETKLHLNYCDRSRAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 476

Query: 1681 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 1860
            RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEA +LMGVQ+NLCTPKNGEILVASTQ
Sbjct: 477  RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGEILVASTQ 536

Query: 1861 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVR 2040
            DFLTSSFL+TRKDTFYDR+ F+L+CSY+GD M+ IDLPTPA+IKP ELWTGKQLFSVLVR
Sbjct: 537  DFLTSSFLVTRKDTFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPVELWTGKQLFSVLVR 596

Query: 2041 PNAQMRVFINLTVLEKNYSKSGE-----------SMCPNDGFVYFRNSELLSGQLGKATL 2187
            PNA  +VF+NLTV EK Y K  E           +MCPNDGFVYFRNSELLSGQLGK TL
Sbjct: 597  PNACTKVFLNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSGQLGKKTL 656

Query: 2188 GNGNKDGLFSILLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKA 2367
            GNGNK+G+FS+LLRDYN+HAAA+CMNRLAK SAR+IGNHGFSIG+DDVQPG  LNK+KK 
Sbjct: 657  GNGNKEGMFSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKV 716

Query: 2368 RIEEGYEACDELIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRN 2547
             I+EGYE C++LI  Y+KG+LK QPGC  AQTLE++I+ VLNK+RET    CM  LHWRN
Sbjct: 717  IIDEGYEECNKLIALYSKGHLKPQPGCSRAQTLESQISCVLNKLRETAGDDCMSTLHWRN 776

Query: 2548 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVA 2727
            SPLIMSQCGSKGSPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP  SK PAAKGFVA
Sbjct: 777  SPLIMSQCGSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVA 836

Query: 2728 NSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASG 2907
            NSFYTGLTA+EFFFHTMGGREGLVDTAVKTADTGY+SRRL+K LEDLS+ YD TVRNASG
Sbjct: 837  NSFYTGLTASEFFFHTMGGREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASG 896

Query: 2908 GVVQFLYGDDGMDPAKMEGKSGIPLNLERLYLKVKATCPARAQASLSPSEVLRIIEEKLA 3087
            G+VQF+YGDDGMDP KMEGK G PLNL++L++KVKATCP R   +LSP  +L++  + L 
Sbjct: 897  GIVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFNDTLF 956

Query: 3088 RHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIHENIATNISG 3267
            + + S +G CSD  K++L  F+  ++  L +T+RAL +DE + G  +  + E IA +ISG
Sbjct: 957  KQETS-SGRCSDKLKEMLTKFLEDRVKMLRSTRRALHIDEDHVGRRDSSVEECIAADISG 1015

Query: 3268 ITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTL 3447
            I+++QLQVFLDTC SRY SK                 EPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1016 ISAKQLQVFLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 1075

Query: 3448 GVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIVMTSRQ 3627
            GVPRIKEIIN AK  STPIIT  L    D   A  VK  +EK  LGEVA ++ IV     
Sbjct: 1076 GVPRIKEIINAAKKTSTPIITTELLSGQDKSFAVKVKSSIEKVVLGEVAAAINIVFKETD 1135

Query: 3628 ASIVVTLDMERIHAL-QLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKLRILS 3804
            +++VV LDMERI A   + +S+ SV+ SIL H R + +   KL +EHV V+D  KLRI +
Sbjct: 1136 SNLVVKLDMERIEAQGYMGISSDSVRLSILNHRRIRLEL--KLTSEHVCVVDQAKLRIHA 1193

Query: 3805 PEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVIN------KDKGKYNLLVEGTNLRAV 3966
                +S L  ELH++++ LPKVIVKGI TVERAV+N      K   +YNLLVEGTNL AV
Sbjct: 1194 AGKGKSGLLLELHNLKSMLPKVIVKGIPTVERAVVNPVFRHDKTFDRYNLLVEGTNLLAV 1253

Query: 3967 MGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLADLMT 4146
            +GTPGVD  KT SN+I+EV +TLGIEAAR+ II EI+YT  ++ M ID+RHMMLLAD+MT
Sbjct: 1254 LGTPGVDAKKTKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMT 1313

Query: 4147 YKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIPMQI 4326
             KGEVL +T  GI KMK SVLMLASFE+T DHLFNAS+ GR D+IEGVSEC+IMG+PM+ 
Sbjct: 1314 SKGEVLPMTAHGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKP 1373

Query: 4327 GTGILKVRQSLKQEVKLNYGLDPII 4401
            GTGILKV+Q L    +  Y  DP++
Sbjct: 1374 GTGILKVKQRLPDLPEFQYQPDPLV 1398


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score = 1737 bits (4499), Expect = 0.0
 Identities = 898/1408 (63%), Positives = 1085/1408 (77%), Gaps = 30/1408 (2%)
 Frame = +1

Query: 268  LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDPHM 447
            L+FTKEP+IED+GPRKI  I +ST S AEI K  EVQVW   YYD+ RKP  + LLD  M
Sbjct: 9    LVFTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEADGLLDSRM 68

Query: 448  GPANKGGTCATCHGNFTSCPGHFGYLNLALPVFNVGYFNSLIDILKSICKSCARILLPEK 627
            GPANK   CATCHGNF  C GH+GYL L  PVFNVGY N+++ ILK ICK CA ILL E 
Sbjct: 69   GPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGCAGILLDED 128

Query: 628  DRVECLKKMRNPKLEALQKSGLAKQIVKKFNKPTNT-CRRCGYVNGTVKKTGTLLGIMHD 804
             R + LKKMRN KL+ LQK  L + I+K+F       C+RCGY+NG VK T + L I+HD
Sbjct: 129  TRKKYLKKMRNSKLDELQKIQLLESIMKRFRSAKFIKCQRCGYINGIVKLTRSTLRIVHD 188

Query: 805  RSKIVDGTLEECSSALSHKTVPRASVNIVPV-LNPVRVLALFKRMADEDCELLYLHDRPE 981
             S   +  + E  SALSH    RA+ ++    L+P  V +LF +M+DEDC LLYL +RPE
Sbjct: 189  CSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCALLYLAERPE 248

Query: 982  KLIITDIAVPPIPIRPSVFTDGGARSNENDITARLSTIIRANAILRQELQCTDKSKCLAD 1161
            KLIIT+IAVPPI IRPSV  DG ++SNENDIT +L  II+ANA L +EL+  + +K    
Sbjct: 249  KLIITNIAVPPIVIRPSVIMDG-SQSNENDITEKLRKIIQANAALHKELE--ESTKFQGG 305

Query: 1162 WDLLQVEVAQYINSDIRGIPLSMQSATPYRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 1341
            +++LQ  VAQYINSD++G P SMQ++ P  GF+QR+KGKQGRFR NLSGKRVEYTGRTVI
Sbjct: 306  FEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYTGRTVI 365

Query: 1342 SPDPNLKITEVAIPILMAQVLTYPERVSHHNIEKLRQCVRNGPQKYPGANFIRYPDDSLM 1521
            SPDPNLKITEVAIPI MA++LTYPERV+HHNIEKLRQC+RNGP KYPGA  +R+   +  
Sbjct: 366  SPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHAGGTTW 425

Query: 1522 HLRYSSRKRAAEELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 1701
            +L+ S RKR A+EL++G IV+RHLEDGDVVLFNRQPSLHRMS+M HRARIMPWRTLRFNE
Sbjct: 426  NLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRTLRFNE 485

Query: 1702 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1881
            SVCNPYNADFDGDEMNLHVPQTEEARTEAL+LM VQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 486  SVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSF 545

Query: 1882 LITRKDTFYDRAAFSLMCSYMGDGMDPIDLPTPALIKPTELWTGKQLFSVLVRPNAQMRV 2061
            LITRKDTFYDR+ FSL+CSYMGDGMDPIDLPTPA+IKP ELW+GKQLFS+L+RP+A +RV
Sbjct: 546  LITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRV 605

Query: 2062 FINLTVLEKNYS-------KSGESMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSI 2220
            ++NLTV EK ++       +  ++MCPNDGFVYFRNSEL+SGQLGK TLGNGNKDGLFS+
Sbjct: 606  YVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSV 665

Query: 2221 LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKQKKARIEEGYEACDE 2400
            LLRDY AHAAA+CMNRLAK SARWIGNHGFSIGIDDVQP ++L  +KK  I  GY  CD 
Sbjct: 666  LLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSECDG 725

Query: 2401 LIQSYNKGNLKLQPGCDAAQTLEAEITGVLNKIRETTAKVCMEELHWRNSPLIMSQCGSK 2580
             I+++NKG L+L PGCDAAQTLEA+I   LN +R+TTAKVCM+ LHWRNSPLIMSQCGSK
Sbjct: 726  FIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQCGSK 785

Query: 2581 GSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKMPAAKGFVANSFYTGLTATE 2760
            GSPINI QM+ACVGQQSVGG RA NGF+DRSLPHF +K+K PA KGFVANSF+TGL+ATE
Sbjct: 786  GSPINICQMVACVGQQSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLSATE 845

Query: 2761 FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDGTVRNASGGVVQFLYGDDG 2940
            FFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL +HYD TVR+ +GG+VQF YGDDG
Sbjct: 846  FFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDG 905

Query: 2941 MDPAKMEGKSGIPLNLERLYLKVKATCPARA-QASLSPSEVLRIIEEKL----------- 3084
            MDP+ MEGK+G PLN +RL+LK KA CP+      LS S+V  +I +KL           
Sbjct: 906  MDPSGMEGKNGKPLNFDRLFLKSKAICPSDGDDIILSSSDVCEVIRKKLSEVGMSKLVEK 965

Query: 3085 --ARHDVSAAGGCSDAFKKLLLDFMHKKMDTLLATKRALQLDEGYAGNNNPDIH--ENIA 3252
              + +D+ +  G SD F K L  F+          K   +L E  A N++ ++   +N  
Sbjct: 966  DASENDIMSVVGFSDDFIKSLQAFV----------KDNTKLTEAIAENDSKNLTNLKNFI 1015

Query: 3253 TNISGITSQQLQVFLDTCTSRYDSKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVAS 3432
              ISGI+ +QL+VFLD C SRY  K+                EPGTQMTLKTFHFAGVAS
Sbjct: 1016 PRISGISRRQLEVFLDICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVAS 1075

Query: 3433 MNVTLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCVEKTTLGEVAKSMKIV 3612
            MNVTLGVPRI EIINGAK+I TPI+TA LE D++  +AR+VKG +EKT LG+VAKS+K+V
Sbjct: 1076 MNVTLGVPRIIEIINGAKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAKSIKVV 1135

Query: 3613 MTSRQASIVVTLDMERIHALQLKMSAYSVKQSILQHFRAKSKTAPKLKTEHVEVLDDKKL 3792
            MTSR A++V++LDMERI    L + A++VK+SIL+  +       KLK E+V+VLD KKL
Sbjct: 1136 MTSRSATVVISLDMERIQDAHLNIDAHTVKESILRTAKL------KLKAENVKVLDIKKL 1189

Query: 3793 RILSPEGDRSKLQFELHSIRATLPKVIVKGIRTVERAVINKDK-----GKYNLLVEGTNL 3957
            ++      R+++ F+L+ ++  LP V+VKG++TVERAV+  DK      K+ LLVEGT L
Sbjct: 1190 QVYPRLSGRNEIHFQLNILKNLLPSVVVKGVKTVERAVLEIDKKDKKVEKFALLVEGTGL 1249

Query: 3958 RAVMGTPGVDGCKTTSNNIIEVKETLGIEAARKCIISEIQYTMASHGMSIDIRHMMLLAD 4137
            + V+G  GVDG KT SN+++E+   LGIEAAR  II +IQYTM SHGMSID+RH+MLLAD
Sbjct: 1250 QQVLGIEGVDGRKTRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLLAD 1309

Query: 4138 LMTYKGEVLGITRFGIQKMKESVLMLASFEKTSDHLFNASFNGRDDKIEGVSECIIMGIP 4317
            +MT +G+VLG+TR GIQKM  SVLMLASFE ++DHLF+AS  GR D IEGVS+CIIMG P
Sbjct: 1310 IMTVRGQVLGMTRHGIQKMGRSVLMLASFESSTDHLFDASMRGRGDPIEGVSDCIIMGKP 1369

Query: 4318 MQIGTGILKVRQSLKQEVKLNYGLDPII 4401
            +++GTG++ ++Q L   V L  G+DPI+
Sbjct: 1370 IRVGTGMIDIKQRLDPPV-LPKGIDPIL 1396