BLASTX nr result
ID: Cocculus23_contig00002676
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00002676
(603 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu... 62 1e-07
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi... 62 1e-07
ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays] gi|1173... 60 5e-07
gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii] 60 5e-07
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu] 60 5e-07
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays] 60 5e-07
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays] 60 5e-07
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831... 60 5e-07
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B... 60 5e-07
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B... 60 5e-07
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo... 60 5e-07
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi... 60 5e-07
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays] 60 5e-07
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g... 60 5e-07
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare] 60 5e-07
gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays] 59 1e-06
ref|XP_003607684.1| 40S ribosomal protein S28 [Medicago truncatu... 59 1e-06
ref|XP_006298879.1| hypothetical protein CARUB_v10014999mg, part... 58 2e-06
ref|XP_007202760.1| hypothetical protein PRUPE_ppa013411mg [Prun... 58 2e-06
gb|ACG47689.1| 40S ribosomal protein S28 [Zea mays] 58 2e-06
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
Length = 86
Score = 62.4 bits (150), Expect = 1e-07
Identities = 31/34 (91%), Positives = 31/34 (91%)
Frame = -1
Query: 102 PNRRMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
P MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 18 PQESMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 51
>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
Length = 400
Score = 62.0 bits (149), Expect = 1e-07
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = -1
Query: 93 RMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
RMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 335 RMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 365
>ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays]
gi|1173237|sp|P46302.1|RS28_MAIZE RecName: Full=40S
ribosomal protein S28 gi|557682|emb|CAA57636.1| small
subunit ribosomal protein S28 [Zea mays]
Length = 65
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30
>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
Length = 107
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 43 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 72
>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
Length = 115
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 80
>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
Length = 68
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 4 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 33
>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
Length = 103
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 39 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 68
>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
distachyon]
Length = 554
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 490 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 519
>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 115
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 80
>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium
distachyon]
Length = 65
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30
>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
Length = 93
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 29 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 58
>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Length = 101
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 37 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 66
>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30
>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
ribosomal protein S28 [Zea mays]
gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
Os03g0167100 [Oryza sativa Japonica Group]
gi|242042107|ref|XP_002468448.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|582044877|pdb|3J60|CC Chain c, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
Japonica Group] gi|194704454|gb|ACF86311.1| unknown
[Zea mays] gi|195605026|gb|ACG24343.1| 40S ribosomal
protein S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S
ribosomal protein S28 [Zea mays]
gi|195607258|gb|ACG25459.1| 40S ribosomal protein S28
[Zea mays] gi|195609472|gb|ACG26566.1| 40S ribosomal
protein S28 [Zea mays] gi|195609816|gb|ACG26738.1| 40S
ribosomal protein S28 [Zea mays]
gi|195610066|gb|ACG26863.1| 40S ribosomal protein S28
[Zea mays] gi|195611640|gb|ACG27650.1| 40S ribosomal
protein S28 [Zea mays] gi|195618106|gb|ACG30883.1| 40S
ribosomal protein S28 [Zea mays]
gi|195618338|gb|ACG30999.1| 40S ribosomal protein S28
[Zea mays] gi|195618690|gb|ACG31175.1| 40S ribosomal
protein S28 [Zea mays] gi|195619662|gb|ACG31661.1| 40S
ribosomal protein S28 [Zea mays]
gi|195620148|gb|ACG31904.1| 40S ribosomal protein S28
[Zea mays] gi|195655603|gb|ACG47269.1| 40S ribosomal
protein S28 [Zea mays] gi|195655989|gb|ACG47462.1| 40S
ribosomal protein S28 [Zea mays]
gi|222612816|gb|EEE50948.1| hypothetical protein
OsJ_31495 [Oryza sativa Japonica Group]
gi|241922302|gb|EER95446.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
protein [Hordeum vulgare subsp. vulgare]
gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
ribosomal protein S28 isoform 1 [Zea mays]
gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
40S ribosomal protein S28 [Zea mays]
gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
[Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
ribosomal protein S28 [Aegilops tauschii]
Length = 65
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30
>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
Length = 65
Score = 60.1 bits (144), Expect = 5e-07
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30
>gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 58.9 bits (141), Expect = 1e-06
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQV+VKF
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVKVKF 30
>ref|XP_003607684.1| 40S ribosomal protein S28 [Medicago truncatula]
gi|355508739|gb|AES89881.1| 40S ribosomal protein S28
[Medicago truncatula]
Length = 221
Score = 58.5 bits (140), Expect = 1e-06
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = -1
Query: 99 NRRMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
N+RMD+Q+K AVVVKV+GRTGSRGQVTQVRVKF
Sbjct: 154 NQRMDSQIKNAVVVKVIGRTGSRGQVTQVRVKF 186
>ref|XP_006298879.1| hypothetical protein CARUB_v10014999mg, partial [Capsella rubella]
gi|482567588|gb|EOA31777.1| hypothetical protein
CARUB_v10014999mg, partial [Capsella rubella]
Length = 92
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -1
Query: 99 NRRMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
+ RMD+Q+K AVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 26 SNRMDSQIKHAVVVKVMGRTGSRGQVTQVRVKF 58
>ref|XP_007202760.1| hypothetical protein PRUPE_ppa013411mg [Prunus persica]
gi|462398291|gb|EMJ03959.1| hypothetical protein
PRUPE_ppa013411mg [Prunus persica]
Length = 124
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -1
Query: 99 NRRMDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
N+RMD+ +K AVVVKVMGRTGSRGQVTQVRVKF
Sbjct: 57 NQRMDSTIKHAVVVKVMGRTGSRGQVTQVRVKF 89
>gb|ACG47689.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 57.8 bits (138), Expect = 2e-06
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = -1
Query: 90 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKF 1
MDTQVKLAVVVKVMGRTGSRGQVTQVRV F
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVXF 30