BLASTX nr result
ID: Cocculus23_contig00002675
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00002675
(304 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EFZ17191.1| hypothetical protein SINV_15085 [Solenopsis invicta] 64 2e-08
gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii] 59 5e-07
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu] 59 5e-07
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays] 59 5e-07
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays] 59 5e-07
ref|XP_005645267.1| ribosomal protein S28e [Coccomyxa subellipso... 59 5e-07
ref|XP_005844267.1| hypothetical protein CHLNCDRAFT_27155 [Chlor... 59 5e-07
ref|XP_002948167.1| component of cytosolic 80S ribosome and 40S ... 59 5e-07
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo... 59 5e-07
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi... 59 5e-07
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi... 59 5e-07
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays] 59 5e-07
ref|XP_001756139.1| predicted protein [Physcomitrella patens] gi... 59 5e-07
ref|XP_001758744.1| predicted protein [Physcomitrella patens] gi... 59 5e-07
ref|XP_001691054.1| ribosomal protein S28, component of cytosoli... 59 5e-07
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g... 59 5e-07
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu... 59 5e-07
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831... 59 7e-07
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B... 59 7e-07
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B... 59 7e-07
>gb|EFZ17191.1| hypothetical protein SINV_15085 [Solenopsis invicta]
Length = 100
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/44 (72%), Positives = 35/44 (79%)
Frame = +2
Query: 173 HQRSLLASLSDSNKVRMSPSRTGPLTFLMMRRF*SSRNLTLTWV 304
H RSLLAS SDS+KVR SPSRTGP TFL++ RF S RN T TWV
Sbjct: 17 HYRSLLASRSDSSKVRRSPSRTGPFTFLIICRFCSPRNSTFTWV 60
>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
Length = 107
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 66 TQVRVKFLDDQNRLIMRNVKGPVREGDI 93
>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
Length = 115
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 74 TQVRVKFLDDQNRLIMRNVKGPVREGDI 101
>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
Length = 68
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 27 TQVRVKFLDDQNRLIMRNVKGPVREGDI 54
>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
Length = 103
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 62 TQVRVKFLDDQNRLIMRNVKGPVREGDI 89
>ref|XP_005645267.1| ribosomal protein S28e [Coccomyxa subellipsoidea C-169]
gi|384247236|gb|EIE20723.1| ribosomal protein S28e
[Coccomyxa subellipsoidea C-169]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|XP_005844267.1| hypothetical protein CHLNCDRAFT_27155 [Chlorella variabilis]
gi|307103908|gb|EFN52165.1| hypothetical protein
CHLNCDRAFT_27155 [Chlorella variabilis]
Length = 66
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 25 TQVRVKFLDDQNRLIMRNVKGPVREGDI 52
>ref|XP_002948167.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox
carteri f. nagariensis] gi|300266387|gb|EFJ50574.1|
component of cytosolic 80S ribosome and 40S small
subunit [Volvox carteri f. nagariensis]
Length = 64
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 23 TQVRVKFLDDQNRLIMRNVKGPVREGDI 50
>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
Length = 93
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 52 TQVRVKFLDDQNRLIMRNVKGPVREGDI 79
>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Length = 101
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 60 TQVRVKFLDDQNRLIMRNVKGPVREGDI 87
>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
Length = 400
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 359 TQVRVKFLDDQNRLIMRNVKGPVREGDI 386
>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|XP_001756139.1| predicted protein [Physcomitrella patens]
gi|168015215|ref|XP_001760146.1| predicted protein
[Physcomitrella patens] gi|168056897|ref|XP_001780454.1|
predicted protein [Physcomitrella patens]
gi|162668130|gb|EDQ54744.1| predicted protein
[Physcomitrella patens] gi|162688526|gb|EDQ74902.1|
predicted protein [Physcomitrella patens]
gi|162692649|gb|EDQ79005.1| predicted protein
[Physcomitrella patens]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|XP_001758744.1| predicted protein [Physcomitrella patens]
gi|168059761|ref|XP_001781869.1| predicted protein
[Physcomitrella patens] gi|162666676|gb|EDQ53324.1|
predicted protein [Physcomitrella patens]
gi|162689881|gb|EDQ76250.1| predicted protein
[Physcomitrella patens]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|XP_001691054.1| ribosomal protein S28, component of cytosolic 80S ribosome and 40S
small subunit [Chlamydomonas reinhardtii]
gi|158279740|gb|EDP05500.1| ribosomal protein S28
[Chlamydomonas reinhardtii]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
ribosomal protein S28 [Zea mays]
gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
Os03g0167100 [Oryza sativa Japonica Group]
gi|242042107|ref|XP_002468448.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|582044877|pdb|3J60|CC Chain c, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
Japonica Group] gi|194704454|gb|ACF86311.1| unknown [Zea
mays] gi|195605026|gb|ACG24343.1| 40S ribosomal protein
S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S ribosomal
protein S28 [Zea mays] gi|195607258|gb|ACG25459.1| 40S
ribosomal protein S28 [Zea mays]
gi|195609472|gb|ACG26566.1| 40S ribosomal protein S28
[Zea mays] gi|195609816|gb|ACG26738.1| 40S ribosomal
protein S28 [Zea mays] gi|195610066|gb|ACG26863.1| 40S
ribosomal protein S28 [Zea mays]
gi|195611640|gb|ACG27650.1| 40S ribosomal protein S28
[Zea mays] gi|195618106|gb|ACG30883.1| 40S ribosomal
protein S28 [Zea mays] gi|195618338|gb|ACG30999.1| 40S
ribosomal protein S28 [Zea mays]
gi|195618690|gb|ACG31175.1| 40S ribosomal protein S28
[Zea mays] gi|195619662|gb|ACG31661.1| 40S ribosomal
protein S28 [Zea mays] gi|195620148|gb|ACG31904.1| 40S
ribosomal protein S28 [Zea mays]
gi|195655603|gb|ACG47269.1| 40S ribosomal protein S28
[Zea mays] gi|195655989|gb|ACG47462.1| 40S ribosomal
protein S28 [Zea mays] gi|222612816|gb|EEE50948.1|
hypothetical protein OsJ_31495 [Oryza sativa Japonica
Group] gi|241922302|gb|EER95446.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
protein [Hordeum vulgare subsp. vulgare]
gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
ribosomal protein S28 isoform 1 [Zea mays]
gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
40S ribosomal protein S28 [Zea mays]
gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
[Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
ribosomal protein S28 [Aegilops tauschii]
Length = 65
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
Length = 86
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 45 TQVRVKFLDDQNRLIMRNVKGPVREGDI 72
>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
distachyon]
Length = 554
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 513 TQVRVKFLDDQNRLIMRNVKGPIREGDI 540
>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 115
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 74 TQVRVKFLDDQNRLIMRNVKGPIREGDI 101
>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 65
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -2
Query: 303 TQVRVKFLDDQNRLIMRNVKGPVREGDI 220
TQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 24 TQVRVKFLDDQNRLIMRNVKGPIREGDI 51