BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00002591
         (1813 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...   624   e-176
ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron sp...   583   e-163
ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma ca...   572   e-160
ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma ca...   572   e-160
ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma ca...   572   e-160
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...   572   e-160
gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitat...   565   e-158
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   563   e-158
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   561   e-157
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...   557   e-156
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   555   e-155
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   551   e-154
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...   551   e-154
ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron sp...   523   e-145
ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron sp...   522   e-145
ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron sp...   522   e-145
ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron sp...   517   e-144
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...   516   e-143
ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [A...   503   e-139
ref|XP_003590782.1| Chloroplastic group IIA intron splicing faci...   496   e-137

>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
            gi|462423956|gb|EMJ28219.1| hypothetical protein
            PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score =  624 bits (1608), Expect = e-176
 Identities = 328/568 (57%), Positives = 403/568 (70%), Gaps = 2/568 (0%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTPE 295
            M+LVPS Q+  TS  DSFQSSFS+FHG  +H+ R  SS   K++TF+ T   ISS   PE
Sbjct: 1    MTLVPSRQLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPE 60

Query: 296  QYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXXXXV 475
            Q P +  +F+ +N+        +   S SW+DKW+E ++   PK P+AVLDY++     +
Sbjct: 61   QNPLRKSNFVRKNQPISQYKPKKNFSSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNL 120

Query: 476  SSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVPERGSVE 655
            S                      TMEKIVEKLKKFGY+D+++E K  V  SV+ E+GSVE
Sbjct: 121  SGSG----YAEGDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDSVI-EKGSVE 175

Query: 656  DIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLFRRQSRTS 835
            DIFY+EEGMLPNSRGGFS+ESPLG+E VFG +G+VRFPWEK   +  +     RR+SRTS
Sbjct: 176  DIFYIEEGMLPNSRGGFSEESPLGIENVFGGDGKVRFPWEKPKEEEKQEEGSVRRKSRTS 235

Query: 836  LAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCEGPPAL 1015
            LAELTLP+SELRRL +L  + K KT+IGG GVTQ +V++IHE+WKTSEI+RLK EGPPAL
Sbjct: 236  LAELTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPAL 295

Query: 1016 NMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANS--YMTATY 1189
            NMKRMHEILERKTGGLVIWRSGTS+SLYRGVSYE+PS+K  K+  +K++ +S    T   
Sbjct: 296  NMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPSVKLNKRIYKKNDISSAPLPTVAD 355

Query: 1190 ESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTDWXX 1369
            +SV +  E  S  + +  +  S  T ++ E+ E+L EV YE E++KLLD LGPR+ DW  
Sbjct: 356  KSVGDFAELASYSNVKTPQEKSENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPG 415

Query: 1370 XXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVGRSRQH 1549
                            GY+PPFRVLPYGVR TLGLKEAT+LRRLARVLPPHFA+GRSRQ 
Sbjct: 416  CDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQL 475

Query: 1550 QGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYRGKD 1729
            QGLA+AM KLWE+S IAKIALKRGVQLTTSERMAEDIK++TGG +LSRNKDF+VFYRGK+
Sbjct: 476  QGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKN 535

Query: 1730 FLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            FLSPDVT             QDEEEQAR
Sbjct: 536  FLSPDVTEALLERERLAKSLQDEEEQAR 563


>ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 852

 Score =  583 bits (1502), Expect = e-163
 Identities = 324/582 (55%), Positives = 395/582 (67%), Gaps = 16/582 (2%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTPE 295
            M+LVPS Q+  TS L+S   S S+FHG   H+ RYSS    K+ +FH TQ  I+S+ TPE
Sbjct: 1    MTLVPSRQLYPTSLLES---SLSKFHGTHFHLFRYSSI-PFKKQSFHATQYFITSSLTPE 56

Query: 296  QYPQKNFSF-ISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXXXX 472
            Q P +  +  I Q K    LS      S SW+D+W++  +   P+RP+AVLDY++     
Sbjct: 57   QNPPRKLNLLICQYKPTKNLS------SCSWIDRWNDSRKQHGPRRPRAVLDYQSNESGN 110

Query: 473  VSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVPERGSV 652
            +SS+ ++                 TM+KIVEKLKKFGYI E   +     +  V E+GSV
Sbjct: 111  LSSDGND--------------GGSTMDKIVEKLKKFGYIAEDKNEGRGEVRERVIEKGSV 156

Query: 653  EDIFYVEEGMLPNSRGGFSKESPLGVEGVFG-ANGEVRFPWEKSSVKADEGRSLFRRQSR 829
            EDIFYVEEGMLPNSRGGFS  SPLG E VFG   GEVRFPWEK   +  E     RR+SR
Sbjct: 157  EDIFYVEEGMLPNSRGGFSGVSPLGTEDVFGDGGGEVRFPWEKPREREKEEGGSIRRRSR 216

Query: 830  TSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCEGPP 1009
            TSLAELTLP+SELRRL++L  + K KTKIGG+GVTQ +V++IHE+WKT+EI+RLK EGPP
Sbjct: 217  TSLAELTLPESELRRLRNLTFQKKHKTKIGGAGVTQAVVEMIHERWKTAEIVRLKIEGPP 276

Query: 1010 ALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEK---KRTQ--------- 1153
            ALNMKRMHEILERKTGGLV+WRSGTS+SLYRGVSYE+PS++  K   KR +         
Sbjct: 277  ALNMKRMHEILERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKQIFKRNEISSTSLPTV 336

Query: 1154 --KSNANSYMTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINK 1327
              KS A  Y+ ATY +VK  +E +                ++ E+ E+LPEV YE E+++
Sbjct: 337  ADKSVAEPYVCATYSNVKTPLEMSE------------NASQETEDTEQLPEVKYEDEVDE 384

Query: 1328 LLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLAR 1507
            LLD +GPR+ DW                  G++PPFR+LPYGVR TLGLKEAT+LRRLAR
Sbjct: 385  LLDSIGPRFKDWPGCDPLPVDADMLPGIVPGFQPPFRILPYGVRSTLGLKEATSLRRLAR 444

Query: 1508 VLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLL 1687
            VLPPHFA+GR+RQ QGLA+AM KLWERS IAKIALKRGVQLTTSERMAEDIKK+TGG LL
Sbjct: 445  VLPPHFALGRNRQLQGLAVAMSKLWERSLIAKIALKRGVQLTTSERMAEDIKKLTGGVLL 504

Query: 1688 SRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            SRNKDF+VFYRGK+FLS +VT             QDEEEQAR
Sbjct: 505  SRNKDFLVFYRGKNFLSAEVTEALVERERLAKSLQDEEEQAR 546


>ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma cacao]
            gi|508714006|gb|EOY05903.1| CRM family member 3A isoform
            4 [Theobroma cacao]
          Length = 645

 Score =  572 bits (1474), Expect = e-160
 Identities = 316/576 (54%), Positives = 387/576 (67%), Gaps = 10/576 (1%)
 Frame = +2

Query: 116  MSLVPSCQI-----CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSS-KRNTFHVTQNKIS 277
            M+L+P+ Q       +++FLDSFQ+  S+FHG+ L    Y SSN   K +T +     ++
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 278  SNFTPEQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
            SN    QYP+      S+ K        +     +W+D W++ ++   PK P+ V +YR 
Sbjct: 61   SNSLFHQYPK------SKTK---AFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKES---VPKS 628
                    + D                  TMEKIVEKLKKFGYI E +E+KE     PK 
Sbjct: 112  --------KGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKR 163

Query: 629  VVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRS 808
            V+ ERGS+EDIFYVEEGMLPN+RGGFSKESPLG+E VFG++GEVRFPWEK     +EG  
Sbjct: 164  VI-ERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGW 222

Query: 809  LFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIR 988
              RR S+TSLAELTLP+SELRRL++L  RTK K +I G+GVTQ +VD IHEKWKT EI+R
Sbjct: 223  TARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVR 282

Query: 989  LKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNAN 1168
            LK EG PALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYE+PS+   K+  +++   
Sbjct: 283  LKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF 342

Query: 1169 SY-MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLG 1345
            +Y + +  +  K+     S  D    + +S    +  ++ E LPE+ YE E++KLL+ LG
Sbjct: 343  TYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLG 402

Query: 1346 PRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHF 1525
            PRYTDW                  GY+PPFRVLPYGVR +LGLKEAT+LRRLARVLPPHF
Sbjct: 403  PRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHF 462

Query: 1526 AVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDF 1705
            A+GRSRQ QGLA+AMIKLWE+SSIAKIALKRGVQLTTSERMAEDIKK+TGG LLSRNKDF
Sbjct: 463  AIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 522

Query: 1706 IVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            +VFYRGK+FLS DV              QDEEEQAR
Sbjct: 523  LVFYRGKNFLSADVAEALVERERLAKSLQDEEEQAR 558


>ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma cacao]
            gi|508714005|gb|EOY05902.1| CRM family member 3A isoform
            3 [Theobroma cacao]
          Length = 856

 Score =  572 bits (1474), Expect = e-160
 Identities = 316/576 (54%), Positives = 387/576 (67%), Gaps = 10/576 (1%)
 Frame = +2

Query: 116  MSLVPSCQI-----CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSS-KRNTFHVTQNKIS 277
            M+L+P+ Q       +++FLDSFQ+  S+FHG+ L    Y SSN   K +T +     ++
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 278  SNFTPEQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
            SN    QYP+      S+ K        +     +W+D W++ ++   PK P+ V +YR 
Sbjct: 61   SNSLFHQYPK------SKTK---AFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKES---VPKS 628
                    + D                  TMEKIVEKLKKFGYI E +E+KE     PK 
Sbjct: 112  --------KGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKR 163

Query: 629  VVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRS 808
            V+ ERGS+EDIFYVEEGMLPN+RGGFSKESPLG+E VFG++GEVRFPWEK     +EG  
Sbjct: 164  VI-ERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGW 222

Query: 809  LFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIR 988
              RR S+TSLAELTLP+SELRRL++L  RTK K +I G+GVTQ +VD IHEKWKT EI+R
Sbjct: 223  TARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVR 282

Query: 989  LKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNAN 1168
            LK EG PALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYE+PS+   K+  +++   
Sbjct: 283  LKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF 342

Query: 1169 SY-MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLG 1345
            +Y + +  +  K+     S  D    + +S    +  ++ E LPE+ YE E++KLL+ LG
Sbjct: 343  TYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLG 402

Query: 1346 PRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHF 1525
            PRYTDW                  GY+PPFRVLPYGVR +LGLKEAT+LRRLARVLPPHF
Sbjct: 403  PRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHF 462

Query: 1526 AVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDF 1705
            A+GRSRQ QGLA+AMIKLWE+SSIAKIALKRGVQLTTSERMAEDIKK+TGG LLSRNKDF
Sbjct: 463  AIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 522

Query: 1706 IVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            +VFYRGK+FLS DV              QDEEEQAR
Sbjct: 523  LVFYRGKNFLSADVAEALVERERLAKSLQDEEEQAR 558


>ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma cacao]
            gi|508714004|gb|EOY05901.1| CRM family member 3A isoform
            2 [Theobroma cacao]
          Length = 685

 Score =  572 bits (1474), Expect = e-160
 Identities = 316/576 (54%), Positives = 387/576 (67%), Gaps = 10/576 (1%)
 Frame = +2

Query: 116  MSLVPSCQI-----CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSS-KRNTFHVTQNKIS 277
            M+L+P+ Q       +++FLDSFQ+  S+FHG+ L    Y SSN   K +T +     ++
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 278  SNFTPEQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
            SN    QYP+      S+ K        +     +W+D W++ ++   PK P+ V +YR 
Sbjct: 61   SNSLFHQYPK------SKTK---AFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKES---VPKS 628
                    + D                  TMEKIVEKLKKFGYI E +E+KE     PK 
Sbjct: 112  --------KGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKR 163

Query: 629  VVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRS 808
            V+ ERGS+EDIFYVEEGMLPN+RGGFSKESPLG+E VFG++GEVRFPWEK     +EG  
Sbjct: 164  VI-ERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGW 222

Query: 809  LFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIR 988
              RR S+TSLAELTLP+SELRRL++L  RTK K +I G+GVTQ +VD IHEKWKT EI+R
Sbjct: 223  TARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVR 282

Query: 989  LKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNAN 1168
            LK EG PALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYE+PS+   K+  +++   
Sbjct: 283  LKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF 342

Query: 1169 SY-MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLG 1345
            +Y + +  +  K+     S  D    + +S    +  ++ E LPE+ YE E++KLL+ LG
Sbjct: 343  TYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLG 402

Query: 1346 PRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHF 1525
            PRYTDW                  GY+PPFRVLPYGVR +LGLKEAT+LRRLARVLPPHF
Sbjct: 403  PRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHF 462

Query: 1526 AVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDF 1705
            A+GRSRQ QGLA+AMIKLWE+SSIAKIALKRGVQLTTSERMAEDIKK+TGG LLSRNKDF
Sbjct: 463  AIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 522

Query: 1706 IVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            +VFYRGK+FLS DV              QDEEEQAR
Sbjct: 523  LVFYRGKNFLSADVAEALVERERLAKSLQDEEEQAR 558


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
            gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
            1 [Theobroma cacao]
          Length = 876

 Score =  572 bits (1474), Expect = e-160
 Identities = 316/576 (54%), Positives = 387/576 (67%), Gaps = 10/576 (1%)
 Frame = +2

Query: 116  MSLVPSCQI-----CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSS-KRNTFHVTQNKIS 277
            M+L+P+ Q       +++FLDSFQ+  S+FHG+ L    Y SSN   K +T +     ++
Sbjct: 1    MTLLPTRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVT 60

Query: 278  SNFTPEQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
            SN    QYP+      S+ K        +     +W+D W++ ++   PK P+ V +YR 
Sbjct: 61   SNSLFHQYPK------SKTK---AFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRK 111

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKES---VPKS 628
                    + D                  TMEKIVEKLKKFGYI E +E+KE     PK 
Sbjct: 112  --------KGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKR 163

Query: 629  VVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRS 808
            V+ ERGS+EDIFYVEEGMLPN+RGGFSKESPLG+E VFG++GEVRFPWEK     +EG  
Sbjct: 164  VI-ERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGW 222

Query: 809  LFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIR 988
              RR S+TSLAELTLP+SELRRL++L  RTK K +I G+GVTQ +VD IHEKWKT EI+R
Sbjct: 223  TARRDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVR 282

Query: 989  LKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNAN 1168
            LK EG PALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYE+PS+   K+  +++   
Sbjct: 283  LKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF 342

Query: 1169 SY-MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLG 1345
            +Y + +  +  K+     S  D    + +S    +  ++ E LPE+ YE E++KLL+ LG
Sbjct: 343  TYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLG 402

Query: 1346 PRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHF 1525
            PRYTDW                  GY+PPFRVLPYGVR +LGLKEAT+LRRLARVLPPHF
Sbjct: 403  PRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHF 462

Query: 1526 AVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDF 1705
            A+GRSRQ QGLA+AMIKLWE+SSIAKIALKRGVQLTTSERMAEDIKK+TGG LLSRNKDF
Sbjct: 463  AIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 522

Query: 1706 IVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            +VFYRGK+FLS DV              QDEEEQAR
Sbjct: 523  LVFYRGKNFLSADVAEALVERERLAKSLQDEEEQAR 558


>gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 878

 Score =  565 bits (1455), Expect = e-158
 Identities = 310/571 (54%), Positives = 389/571 (68%), Gaps = 5/571 (0%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQ-NKISSNFTP 292
            M+LVPS Q   TSF DS        HG  +   RY SS + +++  + T+ + ++S+ + 
Sbjct: 1    MALVPSRQFYPTSFFDSL-------HGTHIKFFRYGSSITFRKHRLYSTKYSSVNSSSSS 53

Query: 293  EQYPQKNFS--FISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXX 466
            EQ P   ++  F +   NN      +   S SW++KW+E +Q   PK P AVLDYRN   
Sbjct: 54   EQNPGGKYNKFFRTTQNNNWHNKYDDNLSSTSWIEKWNETHQQIRPKPPGAVLDYRNS-- 111

Query: 467  XXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEA-SEKKESVPKSVVPER 643
                S +                   TME+IVEKLKKFGY+D+  SE KE   + V+ E+
Sbjct: 112  ---ESGNQPRSSYANRNGGDNNSGGSTMERIVEKLKKFGYMDDVGSEGKEDKGERVI-EK 167

Query: 644  GSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANG-EVRFPWEKSSVKADEGRSLFRR 820
            GSVEDIFYVEEGMLPN RGGFS +SPLGVEGVFG NG EVRFPWEK   K ++     RR
Sbjct: 168  GSVEDIFYVEEGMLPNPRGGFSPDSPLGVEGVFGGNGGEVRFPWEKPKEKVEKEGGSMRR 227

Query: 821  QSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCE 1000
            +S+TSLAELTLP+SELRRL++L  + K KT+IGG+GVTQ +VD+IHE+WKT EI+RLK E
Sbjct: 228  RSKTSLAELTLPESELRRLRNLTFQKKHKTRIGGAGVTQEVVDMIHERWKTLEIVRLKIE 287

Query: 1001 GPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANSYMT 1180
            G PALNMKRMHEILERKTGGLV+WRSGTS+SLYRGVSY++PS++ +K+  +K   +S  T
Sbjct: 288  GAPALNMKRMHEILERKTGGLVVWRSGTSLSLYRGVSYQVPSLELKKRLYKKPEISSIQT 347

Query: 1181 ATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTD 1360
               +S ++  +     +T  A   S +  ++ ++ E+ PEV YE EI+K+LD LGPRY D
Sbjct: 348  VGDKSTRDLAKFAPDTNTDTAIEKSESPSQEKKDVERSPEVKYEDEIDKILDGLGPRYED 407

Query: 1361 WXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVGRS 1540
            W                  GY+PPFR+LP+GVR +LG KEAT+LRRLARVLPPHFAVGR+
Sbjct: 408  WPGSDISPVDADMLPSIVPGYQPPFRILPFGVRPSLGPKEATSLRRLARVLPPHFAVGRN 467

Query: 1541 RQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYR 1720
            RQ QGLA+AMI LWE+S IAKIALKRGVQLTTSERM E+IKK+TGG LLSRNKDF+VFYR
Sbjct: 468  RQLQGLAVAMINLWEKSLIAKIALKRGVQLTTSERMVEEIKKLTGGVLLSRNKDFLVFYR 527

Query: 1721 GKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            GK+FLSP+VT             QDEEEQAR
Sbjct: 528  GKNFLSPEVTKALLERERLAKSLQDEEEQAR 558


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  563 bits (1452), Expect = e-158
 Identities = 327/583 (56%), Positives = 392/583 (67%), Gaps = 17/583 (2%)
 Frame = +2

Query: 116  MSLVPSCQI--CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFT 289
            M+L+PS Q     TSFLDSF       H  RL   RY SSN  + ++ +VT+N I+SN T
Sbjct: 1    MALLPSRQFYPTTTSFLDSF-------HSTRLQFFRYGSSNRFRTHSSYVTRNTIASNST 53

Query: 290  PEQYPQKNFSF----ISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
              Q  + N  F    +SQ  + G  S+G      +W+DKW+  +Q   PK  + V++YRN
Sbjct: 54   NPQR-KSNIVFTNTPVSQYDSGGVSSSGG-----NWIDKWNGPHQKSHPKEXRPVMNYRN 107

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVP 637
                 VS  D                   TMEKIVEKLKKFGY+D+  E KE+V + ++ 
Sbjct: 108  SET--VSRSDG------------GSGGGSTMEKIVEKLKKFGYMDDVKETKENVQERII- 152

Query: 638  ERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLFR 817
            E+GS+EDIFY+EEG+LPN +GGFS +SPLGVE     NGEVRFPWE+   K +EG    R
Sbjct: 153  EKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERP--KVEEGS--VR 208

Query: 818  RQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKC 997
             +SRTSLAELTLP+SELRRL++L +RTK KTKIGG GVTQ +VD+I EKWKTSEI++LKC
Sbjct: 209  IKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKC 268

Query: 998  EGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANSYM 1177
            EG  ALNM+R+HEILERKTGGLVIWRSGTSVSLYRGVSYE+P   Q  KR  K N  S+ 
Sbjct: 269  EGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPV--QLNKRVYKKNETSH- 325

Query: 1178 TATYESVKNH---VEQNSVYDTQLAKGD------SLAT--VKDLEEAEKLPEVAYEHEIN 1324
             +++ S+  +   +  N       A G       S AT  + D E  +   EV YE EI+
Sbjct: 326  -SSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENKDTESEVKYEDEID 384

Query: 1325 KLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLA 1504
            KLLD LGPRYTDW                 HGY+PPFR+LPYGVR +LGLKEATALRRLA
Sbjct: 385  KLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLA 444

Query: 1505 RVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTL 1684
            RVLPPHFA+GRSRQ +GLA+AMIKLWERSSIAK+ALKRGVQLTTSERMAEDIKK+TGG L
Sbjct: 445  RVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVL 504

Query: 1685 LSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            LSRNKDF+VFYRGK+FLS DVT             QDEEEQAR
Sbjct: 505  LSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQAR 547


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score =  561 bits (1447), Expect = e-157
 Identities = 325/583 (55%), Positives = 390/583 (66%), Gaps = 17/583 (2%)
 Frame = +2

Query: 116  MSLVPSCQI--CQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFT 289
            M+L+PS Q     TSFLDSF       H  RL   RY SSN  + ++ +V +N I+SN T
Sbjct: 1    MALLPSRQFYPTTTSFLDSF-------HSTRLQFFRYGSSNRFRTHSSYVARNTIASNST 53

Query: 290  PEQYPQKNFSF----ISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRN 457
              Q  + N  F    +SQ  + G  S+G      +W+DKW+  +Q   PK  + V++YRN
Sbjct: 54   NPQR-KSNIVFTNTPVSQYDSGGVSSSGG-----NWIDKWNGPHQKSHPKESRPVMNYRN 107

Query: 458  XXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVP 637
                 VS  D                   TMEKIVEKLKKFGY+D+  E KE+V + ++ 
Sbjct: 108  SET--VSRSDG------------GSGGGSTMEKIVEKLKKFGYMDDVKETKENVQERII- 152

Query: 638  ERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLFR 817
            E+GS+EDIFY+EEG+LPN +GGFS +SPLGVE     NGEVRFPWE+   K +EG    R
Sbjct: 153  EKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERP--KVEEGS--VR 208

Query: 818  RQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKC 997
             +SRTSLAELTLP+SELRRL++L +RTK KTKIGG GVTQ +VD+I EKWKTSEI++LKC
Sbjct: 209  IKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKC 268

Query: 998  EGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANSYM 1177
            EG  ALNM+R+HEILERKTGGLVIWRSGTSVSLYRGVSYE+P   Q  KR  K N  S+ 
Sbjct: 269  EGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPV--QLNKRVYKKNETSH- 325

Query: 1178 TATYESVKNH---VEQNSVYDTQLAKGD------SLAT--VKDLEEAEKLPEVAYEHEIN 1324
             +++ S+  +   +  N       A G       S AT  + D E  +   EV YE EI+
Sbjct: 326  -SSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENKDTESEVKYEDEID 384

Query: 1325 KLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLA 1504
            KLLD LGPRYTDW                 HGY+PPFR+LPYGVR +LGLKEATALRRLA
Sbjct: 385  KLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLA 444

Query: 1505 RVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTL 1684
            RVLPPHFA+GRSRQ +GLA+AMIKLWERSSIAK+ALKRGVQLTTSERMAEDIKK+TGG L
Sbjct: 445  RVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVL 504

Query: 1685 LSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            LSRNKDF+VFYRGK+FLS DVT             QDEEEQAR
Sbjct: 505  LSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQAR 547


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
            gi|222864769|gb|EEF01900.1| hypothetical protein
            POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score =  557 bits (1435), Expect = e-156
 Identities = 309/571 (54%), Positives = 388/571 (67%), Gaps = 5/571 (0%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTPE 295
            M+LVPS Q+    ++DSFQSSFS+FHG  L   RYSSS   + ++ +      + + T +
Sbjct: 1    MALVPSRQL----YIDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGY------ACSITDK 50

Query: 296  QYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXXXXV 475
                K+ SF +       LS G      SW   W++  +  LP+ PQAV DYR+      
Sbjct: 51   NPSTKSTSFPTDKSKTLNLSTGS-----SWFFNWNKPNKQNLPRTPQAVFDYRSNNSNSS 105

Query: 476  SSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYID-EASEKKESVPKSVVPERGSV 652
             S                     TMEKIVEKLKK GY+D + +E KE + + V+ E+GSV
Sbjct: 106  GSGS-------------------TMEKIVEKLKKHGYMDGDVNENKERMQERVI-EKGSV 145

Query: 653  EDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLFRRQSRT 832
            EDIFYVEEGMLPN+RGGFSKESPLGVE VF ++GEVRFPWEK   + DEG+   R +SRT
Sbjct: 146  EDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKWTARSKSRT 205

Query: 833  SLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCEGPPA 1012
            SLAELTLP+SELRRL++L   TK KT++GG GVTQ +VD IH+KWKTSEI R+K EG PA
Sbjct: 206  SLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPA 265

Query: 1013 LNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKK--RTQKSNANSYMTAT 1186
            LNMKRMHEILE KTGGLVIWRSG +VSLYRGVSYE P++K +K+  + +++++NS   AT
Sbjct: 266  LNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKETSSNSLPAAT 325

Query: 1187 YESVKNHVEQNSVYDTQLAKGDSLATVK--DLEEAEKLPEVAYEHEINKLLDDLGPRYTD 1360
              ++ +  + +   +    +  +   V+  + +E +   +V YE E++KLLD LGPRYTD
Sbjct: 326  SITIGSQSKNSPDNEIHAPRPKTEINVEAANQKETKTQTDVKYEDEVDKLLDGLGPRYTD 385

Query: 1361 WXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVGRS 1540
            W                  GY+PPFR+LPYGVR TLG +++T+LRRLARVLPPHFAVGRS
Sbjct: 386  WPGLDPLPVDADMLPGVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLPPHFAVGRS 445

Query: 1541 RQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYR 1720
            RQ QGLA+AMIKLWE+SSI K+ALKRGVQLTTSERMAEDIKK+TGG LLSRNKDF+VFYR
Sbjct: 446  RQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTGGLLLSRNKDFLVFYR 505

Query: 1721 GKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            GKDFLSP+V+             QDEEEQAR
Sbjct: 506  GKDFLSPEVSEALLERERLAKSLQDEEEQAR 536


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  555 bits (1430), Expect = e-155
 Identities = 322/604 (53%), Positives = 390/604 (64%), Gaps = 38/604 (6%)
 Frame = +2

Query: 116  MSLVPSCQICQ-TSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTP 292
            M+LVPS Q C  T+  DSFQSSFS+FHG   H  R   S   K   F+  QN  S++   
Sbjct: 1    MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFY--QNFSSNSAHE 58

Query: 293  EQYPQKNFSFISQN-------KNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDY 451
            +  P+K  SF + N        +N  L +     S SW+ KW++  +    K PQA ++Y
Sbjct: 59   KNPPRKTCSFSTNNFFSQHDKDDNANLCS-----SSSWLVKWNKPNKYNRLKPPQASVNY 113

Query: 452  RNXXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYI-----DEASEKKES 616
            R      +S+                     TM KIVEKLKKFGY+     D  ++++  
Sbjct: 114  RKNNVD-LSALGFARTDSDGNGVGGVDDGGNTMGKIVEKLKKFGYVGDGDGDGDNDERRG 172

Query: 617  VPKSVVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKAD 796
              K  V E+GS+EDIFYVEEG+LPN+RGGFSKESPLG+    G++GEV+FPWEK   +  
Sbjct: 173  QGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVA 232

Query: 797  EGRSLFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTS 976
            EGR L +R SRTSLAELTLP+SELRRL++L  +TK KT+I G+G+TQ +VD+IHEKWKTS
Sbjct: 233  EGRWLVKRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTS 292

Query: 977  EIIRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQK 1156
            EI+RLK EG PALNMKRMHEILERKTGGLVIWRSGT+VSLYRGVSYE+PS+ Q  KR  K
Sbjct: 293  EIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV-QLNKRIYK 351

Query: 1157 SN---ANSYMTATYESVKNHVEQ----------------------NSVYDTQLAKGDSLA 1261
             N   A+S   AT + +   +                        N+V+ TQ+    +L 
Sbjct: 352  RNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQV----NLE 407

Query: 1262 TVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRV 1441
            T  + +E + + EV YE E+ KLLD LGPRYTDW                  GY+PPFRV
Sbjct: 408  TASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRV 467

Query: 1442 LPYGVRGTLGLKEATALRRLARVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRG 1621
            LPYGVR TL  KEAT L+RLARVLPPHFA+GRSRQ QGLA+AMIKLWE+SSIAKIALKRG
Sbjct: 468  LPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRG 527

Query: 1622 VQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEE 1801
            VQLTTSERM EDIKK+TGGTLLSRNKDF+VFYRGK+FLSPDVT             QDEE
Sbjct: 528  VQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEE 587

Query: 1802 EQAR 1813
            EQAR
Sbjct: 588  EQAR 591


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521988|gb|ESR33355.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  551 bits (1419), Expect = e-154
 Identities = 323/605 (53%), Positives = 391/605 (64%), Gaps = 39/605 (6%)
 Frame = +2

Query: 116  MSLVPSCQICQ-TSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTP 292
            M+LVPS Q C  T+  DSFQSSFS+FHG   H  R   S   K + F+  QN  S++   
Sbjct: 1    MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFY--QNFSSNSAHE 58

Query: 293  EQYPQKNFSFISQN-------KNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDY 451
            +  P+K  SF + N        +N  L +     S SW+ KW++  +    K PQA ++Y
Sbjct: 59   KNTPRKICSFSTNNFFSQHDKDDNANLCS-----SSSWLVKWNKPNKYNRLKPPQASVNY 113

Query: 452  RNXXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYI-----DEASEKKES 616
            R      +S+                     TM KIVEKLKKFGY+     D  ++++  
Sbjct: 114  RKNNVD-LSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRG 172

Query: 617  VPKSVVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKAD 796
              K  V E+GS+EDIFYVEEG+LPN+RGGFSKESPLG+    G++GEV+FPWEK   +  
Sbjct: 173  QGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVA 232

Query: 797  EGRSLF-RRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKT 973
            EGR L  RR SRTSLAELTLP+SELRRL++L  +TK KT+I G+G+TQ +VD+IHEKWKT
Sbjct: 233  EGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKT 292

Query: 974  SEIIRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQ 1153
            SEI+RLK EG PALNMKRMHEILERKTGGLVIWRSGT+VSLYRGVSYE+PS+ Q  KR  
Sbjct: 293  SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV-QLNKRIY 351

Query: 1154 KSN---ANSYMTATYESVKNHVEQ----------------------NSVYDTQLAKGDSL 1258
            K N   A+S   AT + +   +                        N+V+ TQ+    +L
Sbjct: 352  KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQV----NL 407

Query: 1259 ATVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFR 1438
             T  + +E + + EV YE E+ KLLD LGPRYTDW                  GY+PPFR
Sbjct: 408  ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFR 467

Query: 1439 VLPYGVRGTLGLKEATALRRLARVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKR 1618
            VLPYGVR TL  KEAT L+RLARVLPPHFA+GRSRQ QGLA+AMIKLWE+SSIAKIALKR
Sbjct: 468  VLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKR 527

Query: 1619 GVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDE 1798
            GVQLTTSERM EDIKK+TGGTLLSRNKDF+VFYRGK+FLSPDVT             QDE
Sbjct: 528  GVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDE 587

Query: 1799 EEQAR 1813
            EEQAR
Sbjct: 588  EEQAR 592


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521987|gb|ESR33354.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score =  551 bits (1419), Expect = e-154
 Identities = 323/605 (53%), Positives = 391/605 (64%), Gaps = 39/605 (6%)
 Frame = +2

Query: 116  MSLVPSCQICQ-TSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTP 292
            M+LVPS Q C  T+  DSFQSSFS+FHG   H  R   S   K + F+  QN  S++   
Sbjct: 1    MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFY--QNFSSNSAHE 58

Query: 293  EQYPQKNFSFISQN-------KNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDY 451
            +  P+K  SF + N        +N  L +     S SW+ KW++  +    K PQA ++Y
Sbjct: 59   KNTPRKICSFSTNNFFSQHDKDDNANLCS-----SSSWLVKWNKPNKYNRLKPPQASVNY 113

Query: 452  RNXXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYI-----DEASEKKES 616
            R      +S+                     TM KIVEKLKKFGY+     D  ++++  
Sbjct: 114  RKNNVD-LSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRG 172

Query: 617  VPKSVVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKAD 796
              K  V E+GS+EDIFYVEEG+LPN+RGGFSKESPLG+    G++GEV+FPWEK   +  
Sbjct: 173  QGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVA 232

Query: 797  EGRSLF-RRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKT 973
            EGR L  RR SRTSLAELTLP+SELRRL++L  +TK KT+I G+G+TQ +VD+IHEKWKT
Sbjct: 233  EGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKT 292

Query: 974  SEIIRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQ 1153
            SEI+RLK EG PALNMKRMHEILERKTGGLVIWRSGT+VSLYRGVSYE+PS+ Q  KR  
Sbjct: 293  SEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSV-QLNKRIY 351

Query: 1154 KSN---ANSYMTATYESVKNHVEQ----------------------NSVYDTQLAKGDSL 1258
            K N   A+S   AT + +   +                        N+V+ TQ+    +L
Sbjct: 352  KRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQV----NL 407

Query: 1259 ATVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFR 1438
             T  + +E + + EV YE E+ KLLD LGPRYTDW                  GY+PPFR
Sbjct: 408  ETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFR 467

Query: 1439 VLPYGVRGTLGLKEATALRRLARVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKR 1618
            VLPYGVR TL  KEAT L+RLARVLPPHFA+GRSRQ QGLA+AMIKLWE+SSIAKIALKR
Sbjct: 468  VLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKR 527

Query: 1619 GVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDE 1798
            GVQLTTSERM EDIKK+TGGTLLSRNKDF+VFYRGK+FLSPDVT             QDE
Sbjct: 528  GVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDE 587

Query: 1799 EEQAR 1813
            EEQAR
Sbjct: 588  EEQAR 592


>ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 883

 Score =  523 bits (1346), Expect = e-145
 Identities = 300/587 (51%), Positives = 378/587 (64%), Gaps = 21/587 (3%)
 Frame = +2

Query: 116  MSLVPSCQIC-QTSFLDSFQSSFSR------FHGVRLHILR--YSSSNSSKRNTFHVTQN 268
            M+LVPS Q   +T+ L  F+ S S+      FH     + +      N SKR+ F VT +
Sbjct: 1    MALVPSHQFYPRTTRLSFFRYSSSKPFKKPNFHAPHDIVNQDCIFKQNPSKRSNFVVTPH 60

Query: 269  KI-SSNFTPEQYPQKNFSFISQNK-----------NNGCLSAGETRVSHSWVDKWSEEYQ 412
             + + +   ++ P K  +F+ +N            N     +G +  S SW+ KW+E   
Sbjct: 61   DVVNKDCIFKRTPLKRSNFVVKNSSRRWNLDTISPNLKSRDSGTSVFSSSWLGKWNETRN 120

Query: 413  PKLPKRPQAVLDYRNXXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYID 592
                K+ Q VL+YRN       S+ +E                 TM++IVEKLKKFGY D
Sbjct: 121  DIKLKKAQIVLNYRNSNGDTSGSDCEESISGS------------TMDRIVEKLKKFGYAD 168

Query: 593  EASEKKESVPKSVVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPW 772
            EA+EK++   + V  E+GS+EDIF+VEEG+LPN RGGFS+E+P G E +   +G V FPW
Sbjct: 169  EATEKEKREKRVV--EKGSIEDIFFVEEGILPNVRGGFSEETPFGDENIIAKDGVVGFPW 226

Query: 773  EKSSVKADEGRSLFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDL 952
            EK  VK +E  S+  R SRT LAELTLP SELRRL +LA+R K K++I G+GVTQ +V+ 
Sbjct: 227  EKPLVKKEESNSMASR-SRTHLAELTLPASELRRLTNLALRIKNKSRITGAGVTQQVVET 285

Query: 953  IHEKWKTSEIIRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMK 1132
            I EKWKTSE++RLK EG PALNMKRMHEILERKTGGLVIWRSGTSV+LYRGVSYE PS +
Sbjct: 286  IREKWKTSEVVRLKVEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRGVSYETPSER 345

Query: 1133 QEKKRTQKSNANSYMTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYE 1312
             +K+  ++       +   +   N   QNS  D    + DS+ T ++ +  ++  EV YE
Sbjct: 346  MKKRIMRRDEIRQKNSPIVDGESN---QNSRNDVDSLREDSVDTSEENKSIDRQSEVNYE 402

Query: 1313 HEINKLLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATAL 1492
             E++KLLD LGPRYTDW                  GY+PPFR+LPYGVR TL  +EATAL
Sbjct: 403  DEVDKLLDGLGPRYTDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRSTLAAREATAL 462

Query: 1493 RRLARVLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMT 1672
            RRLARVLPPHFA+GRSRQHQGLA  M+KLW+RSSIAKIA+KRGVQLTTSERMAEDIKK+T
Sbjct: 463  RRLARVLPPHFALGRSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSERMAEDIKKLT 522

Query: 1673 GGTLLSRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            GG LLSRNKDF+VFYRGKDFLSP+V              QDEEE+AR
Sbjct: 523  GGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEKAR 569


>ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum tuberosum]
          Length = 883

 Score =  522 bits (1345), Expect = e-145
 Identities = 296/573 (51%), Positives = 363/573 (63%), Gaps = 35/573 (6%)
 Frame = +2

Query: 200  RLHILRYSSSNSSKRNTFHVTQNKIS------------SNF--TPEQY----------PQ 307
            RL  LRYSSS   K+  FH   + ++            SNF  TP             P 
Sbjct: 15   RLSFLRYSSSKPFKKPNFHAPHDIVNQDCIFKQNPPKRSNFMITPHDVVNQDCIFRRTPS 74

Query: 308  KNFSFISQNK-----------NNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYR 454
            K  +F+ +N            N     +G +  S SW+ KW+        K+ Q VL+YR
Sbjct: 75   KRSNFVVKNSSRRWNLDTISPNLKSRDSGTSVFSSSWLGKWNGTRNDIKLKKAQIVLNYR 134

Query: 455  NXXXXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVV 634
            N       S+ +E                 TM++IVEKLKKFGY DEA+EK++   + V 
Sbjct: 135  NSNGDTSGSDCEESISGS------------TMDRIVEKLKKFGYADEATEKEKKEKRVV- 181

Query: 635  PERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLF 814
             E+GS+EDIF+VEEG+LPN RGGFS+ESP G E V   +G VRFPWE+  VK +E  S+ 
Sbjct: 182  -EKGSIEDIFFVEEGILPNVRGGFSEESPFGDENVIAKDGVVRFPWERPLVKKEESNSMA 240

Query: 815  RRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLK 994
             R SRT LAELTLP SELRRL +LA+R K K++I G+GVTQ +V+ I EKWKTSE++RLK
Sbjct: 241  SR-SRTHLAELTLPASELRRLTNLALRIKNKSRITGAGVTQQVVETIREKWKTSEVVRLK 299

Query: 995  CEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANSY 1174
             EG PALNMKRMHEILERKTGGLVIWRSGTSV+LYRGVSYE PS + +K+  ++      
Sbjct: 300  VEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRGVSYETPSERMKKRIMRRDEIRHK 359

Query: 1175 MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGPRY 1354
             +   +   N   QN   D    + DS+ T ++ +  ++  EV YE E++KLLD LGPRY
Sbjct: 360  NSPIVDGESN---QNPRNDVDSLREDSVDTSEENKNIDRQSEVNYEDEVDKLLDGLGPRY 416

Query: 1355 TDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVG 1534
            TDW                  GY+PPFR+LPYGVR TL  +EATALRRLARVLPPHFA+G
Sbjct: 417  TDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRSTLAAREATALRRLARVLPPHFALG 476

Query: 1535 RSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVF 1714
            RSRQHQGLA  M+KLW+RSSIAKIA+KRGVQLTTSERMAEDIKK+TGG LLSRNKDF+VF
Sbjct: 477  RSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVF 536

Query: 1715 YRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            YRGKDFLSP+V              QDEEE+AR
Sbjct: 537  YRGKDFLSPEVAEALLEKERLAKTLQDEEEKAR 569


>ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cicer arietinum]
          Length = 838

 Score =  522 bits (1345), Expect = e-145
 Identities = 307/582 (52%), Positives = 382/582 (65%), Gaps = 16/582 (2%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKI-SSNFTP 292
            MSLVP+ Q+    F+DSF +S   F+ +R               T+++T  K  S+NFT 
Sbjct: 1    MSLVPTRQL--HPFIDSFHTSSPSFNSLRFF-------------TYNLTTYKTPSTNFTF 45

Query: 293  EQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSE-EYQPKLPKRPQAVLDYRNXXXX 469
            ++YP               +    T  +H+W+  W++   +   PK P+AVL+YRN    
Sbjct: 46   KKYP---------------ILPRNTFSTHTWLKHWNQPSSKHNRPKPPRAVLNYRNSGNG 90

Query: 470  X-----VSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEAS-EKKESVPKSV 631
                   SS DDE                 TM++IVEKLKKFGY D+   EKK+   K  
Sbjct: 91   HSSKSHFSSSDDE-----------DNNGGSTMDRIVEKLKKFGYDDDDDDEKKDHNTKER 139

Query: 632  VPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANG-EVRFPWEKSSVKADE--- 799
            V E+GSVEDIFYVEEG+LPN++GGFS ESP GV G FG++G EVRFPWEK +V  DE   
Sbjct: 140  VIEKGSVEDIFYVEEGILPNTKGGFSSESPFGV-GRFGSDGGEVRFPWEKKTVVDDEEEE 198

Query: 800  GRSLFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSE 979
             R   R++S+TSLAELTLP+SEL+RL  L    K KT+IGG GVTQ +VD IHE+WKTSE
Sbjct: 199  DRKGLRKKSKTSLAELTLPESELKRLLKLTFEKKHKTRIGGGGVTQAVVDKIHERWKTSE 258

Query: 980  IIRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKS 1159
            I+RLK EG  ALNMKRMHEILERKTGGLVIWRSG SVSLYRGVSY+ PS++  K+  +KS
Sbjct: 259  IVRLKFEGDAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYKDPSIQHNKQLYRKS 318

Query: 1160 -NANSYMTA---TYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINK 1327
             N++ +++     +    + +  NS  +T L K   L +  D +E + LP++ YE E++K
Sbjct: 319  ENSSKFLSKPSNNFAVKPSELTSNSETNTSLEK---LESTNDQKEKDNLPKLTYEDEVDK 375

Query: 1328 LLDDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLAR 1507
            LLD LGPRYTDW                  GY+PPFRVLP+GVR TLGLKEAT+LRR+AR
Sbjct: 376  LLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGLKEATSLRRIAR 435

Query: 1508 VLPPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLL 1687
             LPPHFA+GR+RQ QGLA AMIKLWE+SSIAK+ALKRGVQLTTSERMAE+IKK+TGGT+L
Sbjct: 436  GLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGTIL 495

Query: 1688 SRNKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            SRNKDF+VF+RGK FLS DVT             QDEEEQAR
Sbjct: 496  SRNKDFLVFFRGKSFLSSDVTEALLERERMAKAMQDEEEQAR 537


>ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max]
          Length = 835

 Score =  517 bits (1332), Expect = e-144
 Identities = 308/575 (53%), Positives = 371/575 (64%), Gaps = 9/575 (1%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTPE 295
            M+LVP+       F DSF SS   FH +R     +  S +   N+  + +  +   F   
Sbjct: 1    MALVPT-----RPFFDSFHSS-PNFHSLRFCNSLFRHSLTPSPNSTFLRRKPL---FIFR 51

Query: 296  QYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKL-PKRPQAVLDYR---NXX 463
              P K+FS                     W+ +W++       PK P AVLDY    +  
Sbjct: 52   CNPAKSFS-----------------TDKHWLKRWNDPTNNHARPKPPCAVLDYSENGHAS 94

Query: 464  XXXVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVPER 643
               ++S D+E                 TM++IVEKLKKFGY+++  + KE V      E+
Sbjct: 95   KSGLASSDEE--------GGDGNTGGSTMDRIVEKLKKFGYVEDGIQNKERVI-----EK 141

Query: 644  GSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANG-EVRFPWEKSSVKADEGRSLFRR 820
            GSVEDIFYVEEGMLPNSRGGFS ESPLG  G FG++  EVRFPWEK  V+  E R   R 
Sbjct: 142  GSVEDIFYVEEGMLPNSRGGFSSESPLGF-GSFGSDDREVRFPWEKPVVEELEERKSMRS 200

Query: 821  QSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCE 1000
            +S+TSLAELTLP+SEL+RL  L    K KT+IG SGVTQ +VD IHE+WKTSEI+RLK E
Sbjct: 201  RSKTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFE 260

Query: 1001 GPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNANSYM- 1177
            G  ALNMKRMHEILERKTGGLVIWRSG SVSLYRGVSYE+PS++Q KK  +KS  +S + 
Sbjct: 261  GEAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVPSVQQNKKIYRKSENSSKLL 320

Query: 1178 -TATYESVKN--HVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGP 1348
             T +Y SV N   +  NS     LAK   L +  D +E + LP+V YEHE++KLLD LGP
Sbjct: 321  PTPSYNSVGNPSDIASNSGTSAPLAK---LESTNDEKERDYLPKVNYEHEVDKLLDGLGP 377

Query: 1349 RYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFA 1528
            RYTDW                  GY+PPFRVLP+GVR TLGL+EATALRR+AR LPPHFA
Sbjct: 378  RYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRATLGLREATALRRIARTLPPHFA 437

Query: 1529 VGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFI 1708
            +GR+RQ QGLA+AMIKLWE SSIAK+ALKRGVQLTTSERMAE+IKK+TGG LLSRNKDF+
Sbjct: 438  LGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFL 497

Query: 1709 VFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            VF+RGK+FLS DVT             QDEEEQAR
Sbjct: 498  VFFRGKNFLSADVTQALLERERMAKVMQDEEEQAR 532


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
            gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
          Length = 874

 Score =  516 bits (1328), Expect = e-143
 Identities = 303/580 (52%), Positives = 367/580 (63%), Gaps = 14/580 (2%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSS----NSSKRNTFH-----VTQN 268
            M+L+ S     T+F D+FQ+ F   H     +L+Y SS    N S  ++F+        N
Sbjct: 1    MALLHSRLCHATNFFDTFQTEFHSSH----ILLKYGSSVVFRNRSFCSSFYGLTTDTFSN 56

Query: 269  KISSNFTPEQYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLD 448
             IS      + P   ++          L    +RVS  W+D+W+E  +   PK P+AVLD
Sbjct: 57   GISYGSLSSRTPVYRYN----------LRRNLSRVS--WIDRWNETAKRNRPKPPRAVLD 104

Query: 449  YRNXXXXXVS--SEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVP 622
            Y +     VS  S                     TMEKIV KLKKFGYID+  E KE   
Sbjct: 105  YPSSDENEVSISSTGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYIDD--ENKEKGE 162

Query: 623  KSVVPERGSVEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEG 802
            +  + E+GSVEDI Y+EEGMLPN+RGGFSKESP+G E +FG++GEVRFPWEK   K D  
Sbjct: 163  ERAI-EKGSVEDILYIEEGMLPNTRGGFSKESPMGDENMFGSDGEVRFPWEKPKEKEDTH 221

Query: 803  RSLFRRQSRTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEI 982
                RR S  SLA+LTLP+ ELRRL++L  + + K KIGG GVTQ +VD+IHEKWK+SEI
Sbjct: 222  GDSTRRGS-ASLAQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEI 280

Query: 983  IRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSN 1162
            +RLK  GPPALNMKRMHEILERKTGGLVIWRSGTS+SLYRGVSYELP   Q  KR  K N
Sbjct: 281  VRLKILGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRN 340

Query: 1163 ANSYMTATYESVKNHVEQNS---VYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLL 1333
              + +  T  S     E +S   VY  Q  + ++    +   E     +V YE E+NKLL
Sbjct: 341  EITALPKTGASTIAPSESSSHRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDEVNKLL 400

Query: 1334 DDLGPRYTDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVL 1513
            D LGPRYTDW                   Y+PPFR+LPYGVR ++G+KEATAL+RLAR L
Sbjct: 401  DGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKRLARRL 460

Query: 1514 PPHFAVGRSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSR 1693
            PPHFA+GR+RQ QGLA+AM KLWERS IAKIALKRGVQLTTSERMAE+IKK+TGG LLSR
Sbjct: 461  PPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGGMLLSR 520

Query: 1694 NKDFIVFYRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            NKDF+VFYRGK FLSP+VT             QD+EEQAR
Sbjct: 521  NKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDKEEQAR 560


>ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [Amborella trichopoda]
            gi|548841355|gb|ERN01418.1| hypothetical protein
            AMTR_s00002p00265220 [Amborella trichopoda]
          Length = 882

 Score =  503 bits (1294), Expect = e-139
 Identities = 287/569 (50%), Positives = 365/569 (64%), Gaps = 3/569 (0%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSN-SSKRNTFHVTQNKISSNFTP 292
            M+  PS  +  T+ LDS  S++SRF+G RL I R   ++ SS  NT         +N   
Sbjct: 1    MAFTPSRPLYPTALLDSLHSTWSRFNGSRLQITRLQRTHVSSYLNTI--------TNSKD 52

Query: 293  EQYPQKNFSFISQNKN-NGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXXX 469
             + P+K    IS N + NG ++   T+V   W+ KW+      LPKRP+AVLDYR+    
Sbjct: 53   LESPEK----ISPNPHCNGVIAEKTTQVQGHWIHKWTGSQCRNLPKRPKAVLDYRDNGVS 108

Query: 470  XVSSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVPERGS 649
              S E +++                TM++IV+KLK+FG++DE   +K  +     PERGS
Sbjct: 109  --SDEQEDINSKDDELGFEEEAEKSTMDQIVDKLKRFGFMDE---RKTGLDMERRPERGS 163

Query: 650  VEDIFYVEEGMLPNSRGGFSKESPLGVEGVFGANGEVRFPWEKSSVKADEGRSLFRRQSR 829
            VED+FY E G+LPNSRGG S +SP GV  +   NGEVRFPW++         S+ + +SR
Sbjct: 164  VEDVFYAEPGVLPNSRGGLSLDSPNGV--LERENGEVRFPWQREV-------SVRKTRSR 214

Query: 830  TSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCEGPP 1009
            TSLAELTLP SE+RRL +LA+R K +TKI G+GVTQ IVD IH+KWK+ EI+R+KCEG P
Sbjct: 215  TSLAELTLPASEIRRLTNLALRMKGRTKIKGAGVTQAIVDSIHKKWKSEEIVRIKCEGAP 274

Query: 1010 ALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKS-NANSYMTAT 1186
             LNMKR HEILERKTGGLVIWRSG+S+ LYRG++Y++   K  KK+TQ + N N   +A 
Sbjct: 275  TLNMKRSHEILERKTGGLVIWRSGSSIVLYRGINYDVSDEKPAKKQTQVNRNFNRNGSAI 334

Query: 1187 YESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGPRYTDWX 1366
             E   +  E  S  D Q    +    +++  E E   +V YE E+++LL+ LGPRY DW 
Sbjct: 335  DEVNGSFSESVSSRDLQRFPEEKGVNIENKTETEPPNKVNYEKEVDQLLEGLGPRYNDWA 394

Query: 1367 XXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVGRSRQ 1546
                             GYKPPFR+LPYG+R +LG  E T LRRLARVLPPHFA+GRSRQ
Sbjct: 395  GCDPLPVDADLLPGVVPGYKPPFRLLPYGMRFSLGRTEMTTLRRLARVLPPHFALGRSRQ 454

Query: 1547 HQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVFYRGK 1726
            HQGLA+AM+K+WE+SSI KIALKRGVQ T  ERMAE IK +TGGTLLSRNKDF+VFYRGK
Sbjct: 455  HQGLAVAMVKVWEKSSIVKIALKRGVQNTCGERMAEQIKSLTGGTLLSRNKDFMVFYRGK 514

Query: 1727 DFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            DFLSP+VT             QDEEE AR
Sbjct: 515  DFLSPEVTEALLERERLAKALQDEEENAR 543


>ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
            truncatula] gi|355479830|gb|AES61033.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Medicago
            truncatula]
          Length = 838

 Score =  496 bits (1278), Expect = e-137
 Identities = 292/573 (50%), Positives = 368/573 (64%), Gaps = 7/573 (1%)
 Frame = +2

Query: 116  MSLVPSCQICQTSFLDSFQSSFSRFHGVRLHILRYSSSNSSKRNTFHVTQNKISSNFTPE 295
            M+L+P+ Q      L  F +S +  H +R      SSS+  K   F              
Sbjct: 1    MALLPTRQ------LHPFHTSPNFHHSIRF-FTTISSSSIQKSFIFKT------------ 41

Query: 296  QYPQKNFSFISQNKNNGCLSAGETRVSHSWVDKWSEEYQPKLPKRPQAVLDYRNXXXXXV 475
              P KNF+++S       L +  T    +W+ +W+E+ +PK P+    VL+Y+       
Sbjct: 42   --PTKNFTYLSSKNPIFHLKSFCT---DTWLKRWNEQNRPKPPR---GVLNYQGSGNGHS 93

Query: 476  SSEDDEMXXXXXXXXXXXXXXXXTMEKIVEKLKKFGYIDEASEKKESVPKSVVPERGSVE 655
            S  D +                  M++IVEKLKKFGY    S++ E++ +  V E+GS+E
Sbjct: 94   SKSDFDSSDDEDFGGSR-------MDRIVEKLKKFGY---ESDENENIKEEGVIEKGSME 143

Query: 656  DIFYVEEGMLPNSRGGFSKESPLGVEGVFGAN--GEVRFPWEKSSVKAD-EGRSLFRRQS 826
            DIFYVEEGMLPN+RGGFS ESP G+ G +G+   GEVRFPWEK  V  + E R+  R++S
Sbjct: 144  DIFYVEEGMLPNTRGGFSPESPFGI-GSYGSGDGGEVRFPWEKPVVDEEVEERTSSRKKS 202

Query: 827  RTSLAELTLPQSELRRLKHLAVRTKQKTKIGGSGVTQTIVDLIHEKWKTSEIIRLKCEGP 1006
            +TS+AELTLP+SELRRL  L    K KT+IGG GVTQ  VD IHE+WKTSEI+RLK EG 
Sbjct: 203  KTSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGD 262

Query: 1007 PALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPSMKQEKKRTQKSNAN----SY 1174
             ALNMKRMHEILE+KTGGLVIWRSG SVSLYRGVSY+ PS++Q K+  +K+  +    S 
Sbjct: 263  AALNMKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDPSIQQNKQLYRKNEKSLKFLSA 322

Query: 1175 MTATYESVKNHVEQNSVYDTQLAKGDSLATVKDLEEAEKLPEVAYEHEINKLLDDLGPRY 1354
             +  +E   +    +S   T L K   L +  D +E   LP+++YE E++KLLD LGPRY
Sbjct: 323  PSDDFEVEPSEFTTDSETKTSLEK---LESTNDQKEKVNLPKISYEDEVDKLLDGLGPRY 379

Query: 1355 TDWXXXXXXXXXXXXXXXXXHGYKPPFRVLPYGVRGTLGLKEATALRRLARVLPPHFAVG 1534
            TDW                  GY+PPFRVLP+GVR TLG KEAT+LRR+AR LPPHFA+G
Sbjct: 380  TDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALG 439

Query: 1535 RSRQHQGLALAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKMTGGTLLSRNKDFIVF 1714
            R+RQ QGLA AMIKLWE+SSIAK+ALKRGVQLTTSERMAE+IKK+TGG +LSRNKDF+VF
Sbjct: 440  RNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTGGIILSRNKDFLVF 499

Query: 1715 YRGKDFLSPDVTXXXXXXXXXXXXXQDEEEQAR 1813
            YRGK+FLSPDVT             QDEEEQAR
Sbjct: 500  YRGKNFLSPDVTQALLEREKMAKSMQDEEEQAR 532