BLASTX nr result
ID: Cocculus23_contig00002364
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00002364
(646 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006090817.1| PREDICTED: small nuclear ribonucleoprotein F... 80 2e-17
ref|XP_004249363.1| PREDICTED: probable small nuclear ribonucleo... 89 2e-15
gb|EEC72605.1| hypothetical protein OsI_06076 [Oryza sativa Indi... 89 2e-15
gb|EYU39672.1| hypothetical protein MIMGU_mgv1a017211mg [Mimulus... 88 3e-15
ref|XP_006848141.1| hypothetical protein AMTR_s00029p00226370 [A... 87 4e-15
gb|ELU01412.1| hypothetical protein CAPTEDRAFT_159680 [Capitella... 87 6e-15
gb|ABA95170.1| small nuclear ribonucleoprotein F, putative, expr... 87 6e-15
gb|ABK22541.1| unknown [Picea sitchensis] 87 6e-15
ref|XP_006198012.1| PREDICTED: uncharacterized protein LOC102543... 86 8e-15
ref|XP_001777342.1| predicted protein [Physcomitrella patens] gi... 86 8e-15
ref|XP_004507856.1| PREDICTED: probable small nuclear ribonucleo... 86 1e-14
gb|AFK45150.1| unknown [Lotus japonicus] 86 1e-14
ref|XP_003549441.1| PREDICTED: probable small nuclear ribonucleo... 86 1e-14
ref|XP_003555743.1| PREDICTED: probable small nuclear ribonucleo... 86 1e-14
gb|ACU13643.1| unknown [Glycine max] 86 1e-14
ref|XP_002272246.1| PREDICTED: probable small nuclear ribonucleo... 86 1e-14
ref|XP_001761112.1| predicted protein [Physcomitrella patens] gi... 86 1e-14
ref|NP_001154030.1| Small nuclear ribonucleoprotein F [Oncorhync... 86 1e-14
ref|XP_003610112.1| Small nuclear ribonucleoprotein F [Medicago ... 86 1e-14
ref|XP_006339211.1| PREDICTED: probable small nuclear ribonucleo... 85 2e-14
>ref|XP_006090817.1| PREDICTED: small nuclear ribonucleoprotein F-like [Myotis
lucifugus]
Length = 86
Score = 80.1 bits (196), Expect(2) = 2e-17
Identities = 35/40 (87%), Positives = 38/40 (95%)
Frame = +1
Query: 163 MSVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM 282
M++P+NPKPFLN LTGKPVMVKLKWGMEYKGYLVSVD YM
Sbjct: 1 MNLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYM 40
Score = 35.4 bits (80), Expect(2) = 2e-17
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 300 GEILIRCNNVLYLRGV 347
GE+LIRCNNVLY+RGV
Sbjct: 60 GEVLIRCNNVLYIRGV 75
>ref|XP_004249363.1| PREDICTED: probable small nuclear ribonucleoprotein F-like [Solanum
lycopersicum]
Length = 88
Score = 88.6 bits (218), Expect = 2e-15
Identities = 43/64 (67%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMXXXXXXG-KFLSGVITFSISE 342
+VPVNPKPFLNNLTGKPVMVKLKWG+EYKGYLVSVDSYM +F GV + S+ E
Sbjct: 3 TVPVNPKPFLNNLTGKPVMVKLKWGLEYKGYLVSVDSYMNLQLANAEEFTDGVSSGSLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>gb|EEC72605.1| hypothetical protein OsI_06076 [Oryza sativa Indica Group]
gi|222622299|gb|EEE56431.1| hypothetical protein
OsJ_05599 [Oryza sativa Japonica Group]
Length = 146
Score = 88.6 bits (218), Expect = 2e-15
Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +1
Query: 133 IHAKNTRNSNMSVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKF 309
+ +N N ++VPVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM ++
Sbjct: 52 LSGENKDNDPVTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEY 111
Query: 310 LSGVITFSISEVYLR 354
+ G + ++ E+ +R
Sbjct: 112 IDGQFSGNLGEILIR 126
>gb|EYU39672.1| hypothetical protein MIMGU_mgv1a017211mg [Mimulus guttatus]
Length = 88
Score = 87.8 bits (216), Expect = 3e-15
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMXXXXXXG-KFLSGVITFSISE 342
+VPVNPKPFLNNLTGKPVMVKLKWGMEYKG+LVSVDSYM +++ G T S+ E
Sbjct: 3 TVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANAEEYIDGKCTGSLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_006848141.1| hypothetical protein AMTR_s00029p00226370 [Amborella trichopoda]
gi|548851446|gb|ERN09722.1| hypothetical protein
AMTR_s00029p00226370 [Amborella trichopoda]
Length = 86
Score = 87.0 bits (214), Expect = 4e-15
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
+VPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM +++ G ++ ++ E
Sbjct: 3 TVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQLSGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>gb|ELU01412.1| hypothetical protein CAPTEDRAFT_159680 [Capitella teleta]
Length = 86
Score = 86.7 bits (213), Expect = 6e-15
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +1
Query: 163 MSVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSIS 339
M++P+NPKPFLN LTGKPVMVKLKWGMEYKGYLVSVD YM +F+ G ++ ++
Sbjct: 1 MAMPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLSGNLG 60
Query: 340 EVYLR 354
EV++R
Sbjct: 61 EVFIR 65
>gb|ABA95170.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
Length = 85
Score = 86.7 bits (213), Expect = 6e-15
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +1
Query: 163 MSVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSIS 339
M+VPVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G + ++
Sbjct: 1 MTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLG 60
Query: 340 EVYLR 354
E+ +R
Sbjct: 61 EILIR 65
>gb|ABK22541.1| unknown [Picea sitchensis]
Length = 84
Score = 86.7 bits (213), Expect = 6e-15
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
+VPVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGE 62
Query: 343 VYLR 354
V +R
Sbjct: 63 VLIR 66
>ref|XP_006198012.1| PREDICTED: uncharacterized protein LOC102543758 [Vicugna pacos]
Length = 207
Score = 86.3 bits (212), Expect = 8e-15
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 11/94 (11%)
Frame = +1
Query: 106 QERKAVDGRIHAKNTRNS----------NMSVPVNPKPFLNNLTGKPVMVKLKWGMEYKG 255
+ +AV+GR A++ NS + +P+NPKPFLN LTGKPVMVKLKWGMEYKG
Sbjct: 93 EAERAVEGRTTAESAANSLQHLPTTASASRCLPLNPKPFLNGLTGKPVMVKLKWGMEYKG 152
Query: 256 YLVSVDSYM-XXXXXXGKFLSGVITFSISEVYLR 354
YLVSVD YM +++ G ++ + EV +R
Sbjct: 153 YLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIR 186
>ref|XP_001777342.1| predicted protein [Physcomitrella patens]
gi|162671318|gb|EDQ57872.1| predicted protein
[Physcomitrella patens]
Length = 85
Score = 86.3 bits (212), Expect = 8e-15
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
+VPVNPKPFLN+LTGKPV+VKLKWGMEYKGYLVSVDSYM +F+ G T ++ E
Sbjct: 1 TVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGE 60
Query: 343 VYLR 354
V +R
Sbjct: 61 VLIR 64
>ref|XP_004507856.1| PREDICTED: probable small nuclear ribonucleoprotein F-like [Cicer
arietinum]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>gb|AFK45150.1| unknown [Lotus japonicus]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_003549441.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max]
gi|593783443|ref|XP_007154762.1| hypothetical protein
PHAVU_003G145500g [Phaseolus vulgaris]
gi|561028116|gb|ESW26756.1| hypothetical protein
PHAVU_003G145500g [Phaseolus vulgaris]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_003555743.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max]
gi|255628071|gb|ACU14380.1| unknown [Glycine max]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>gb|ACU13643.1| unknown [Glycine max]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_002272246.1| PREDICTED: probable small nuclear ribonucleoprotein F [Vitis
vinifera] gi|296083390|emb|CBI23345.3| unnamed protein
product [Vitis vinifera]
Length = 88
Score = 85.9 bits (211), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMXXXXXXG-KFLSGVITFSISE 342
+VP+NPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TVPLNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_001761112.1| predicted protein [Physcomitrella patens]
gi|162687798|gb|EDQ74179.1| predicted protein
[Physcomitrella patens]
Length = 87
Score = 85.9 bits (211), Expect = 1e-14
Identities = 41/64 (64%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLN+LTGKPV+VKLKWGMEYKGYLVSVDSYM +F+ G T ++ E
Sbjct: 3 TIPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGE 62
Query: 343 VYLR 354
V +R
Sbjct: 63 VLIR 66
>ref|NP_001154030.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
gi|225703496|gb|ACO07594.1| Small nuclear
ribonucleoprotein F [Oncorhynchus mykiss]
Length = 65
Score = 85.5 bits (210), Expect = 1e-14
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 163 MSVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMXXXXXXG-KFLSGVITFSIS 339
MS+P+NPKPFLN LTGKPVMVKLKWGMEYKGYLVSVDSYM +++ G + +
Sbjct: 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANSEEYVDGALADHLG 60
Query: 340 EVYLR 354
EV +R
Sbjct: 61 EVLVR 65
>ref|XP_003610112.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355511167|gb|AES92309.1| Small nuclear
ribonucleoprotein F [Medicago truncatula]
gi|388505566|gb|AFK40849.1| unknown [Medicago
truncatula]
Length = 88
Score = 85.5 bits (210), Expect = 1e-14
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYM-XXXXXXGKFLSGVITFSISE 342
++PVNPKPFLNNLTGKPV+VKLKWGMEYKGYLVSVDSYM +++ G T ++ E
Sbjct: 3 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66
>ref|XP_006339211.1| PREDICTED: probable small nuclear ribonucleoprotein F-like [Solanum
tuberosum]
Length = 88
Score = 85.1 bits (209), Expect = 2e-14
Identities = 42/64 (65%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Frame = +1
Query: 166 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMXXXXXXG-KFLSGVITFSISE 342
+VPVNPKPFLNNLTGK VMVKLKWG+EYKGYLVSVDSYM +F GV + S+ E
Sbjct: 3 TVPVNPKPFLNNLTGKHVMVKLKWGLEYKGYLVSVDSYMNLQLANAEEFTDGVSSGSLGE 62
Query: 343 VYLR 354
+ +R
Sbjct: 63 ILIR 66