BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00001355
         (3814 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1294   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1282   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1281   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1270   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1269   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1269   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1267   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1265   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1264   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1263   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...  1263   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1258   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1247   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1241   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1238   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1234   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1232   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...  1229   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...  1228   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1226   0.0  

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1294 bits (3349), Expect = 0.0
 Identities = 639/911 (70%), Positives = 740/911 (81%), Gaps = 5/911 (0%)
 Frame = -1

Query: 3604 AVCSHSPSIQSPTLSDPIREDLELGFQESVKRVFVDDPPWLSSFEANGILDDS-----DE 3440
            A C   P   +    + +++   +  +ES+ R+FV DPPW+SSF  +   + +     + 
Sbjct: 72   AQCHALPLSPTNNSIETLQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNV 131

Query: 3439 KLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFLGW 3260
            KL FRE ER+ Y  LRRRQVK ETEAWE+  EEYRE+ REMCE KLAPNLPYVK+LFLGW
Sbjct: 132  KLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGW 191

Query: 3259 FEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEGCVRLV 3080
            FEPL EAI +EQR Q +K+QKA+YA +I LLPADKMAVIVMHKMMGL+M+G +EGCVR+V
Sbjct: 192  FEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVV 251

Query: 3079 QAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVEXXXXXXXX 2900
            QAA+ +G AIEQEVRIH+FLE++K     K +   +     KE  I RK V+        
Sbjct: 252  QAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGLREKE--ILRKRVKSFIRKKKI 309

Query: 2899 XXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTI 2720
                   KN+E    WGRD QAKLGS LI+LL ETAYVQ PVNQ +DC P++RPAF HT 
Sbjct: 310  IEVQKLVKNEE-ITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTF 368

Query: 2719 KTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFL 2540
            KT+ KE G++  ++ G IECD LV  GL  TA+HMVIPY+PMLI P+ WKGY KGG+LFL
Sbjct: 369  KTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFL 428

Query: 2539 PSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNI 2360
            PSYVMRTHG+R+QQDA+++VPRRQ+QKVFEALDTLG TKWR+NRRVLS +ES+W  GGN+
Sbjct: 429  PSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNL 488

Query: 2359 AGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDE 2180
             GLVDRE+V +PEKP +EDL EI           K N ERH+ RCD E+KLSVARKMKDE
Sbjct: 489  GGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDE 548

Query: 2179 DGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAG 2000
            +GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GL WLKI LANLYAG
Sbjct: 549  EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAG 608

Query: 1999 GIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSP 1820
            G+EKLSYD RL FV+NH+DD+FDSA+ P+ G RWWL AEDPFQCLAACINLSEAL+SSSP
Sbjct: 609  GVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSP 668

Query: 1819 HAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKD 1640
            H V SHLPIHQDGSCNGLQHYAALGR+SLEA+AVNLVAG++PADVYSEIA RV  I+K+D
Sbjct: 669  HTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRD 728

Query: 1639 IMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQ 1460
              KDP +DP A LAK+LI QVDRKLVKQTVMTSVYGVTYIGAREQIKRRL E+G+I+D++
Sbjct: 729  SNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDER 788

Query: 1459 LLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYH 1280
            LLF A+CYAA VT+ ALGE+FQAAR IM WLG+CAKV+ASENQPV+W TPLGLPV+QPY 
Sbjct: 789  LLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYC 848

Query: 1279 KTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 1100
            K+ERHLIRTSLQVL+LQREG  V  ++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FA
Sbjct: 849  KSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFA 908

Query: 1099 GVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGDFDL 920
            GVHDSFWTHACD+DKMNQILREKFVELY  PILENLLESFQTS PTL FP LP RG+FDL
Sbjct: 909  GVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDL 968

Query: 919  KKVLESPYFFN 887
            ++VLESPYFFN
Sbjct: 969  REVLESPYFFN 979


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 625/883 (70%), Positives = 742/883 (84%), Gaps = 4/883 (0%)
 Frame = -1

Query: 3523 ESVKRVFVDDPPWLSSFEANGILDDSDE--KLGFREMERKKYNALRRRQVKMETEAWEKR 3350
            ES  R+F+ DPPW+S+    G+   +++  K+  +E+E++KYN LRRRQVK ETEAWEK 
Sbjct: 99   ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 3349 AEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQE--SKRQKASYAQYI 3176
             EEYREL REMCE KLAPNLPYVK LFLGWFEP+ EAIA EQ++Q+  SK+ +A+YA +I
Sbjct: 159  VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 3175 GLLPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRG 2996
             LLPADKMAVIVMHKMMGL+M   + G V++VQAA+++G AIEQEVRIHNFLE++K  + 
Sbjct: 219  ELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQ- 277

Query: 2995 WKKIDDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCL 2816
             +K   DE + +SKE +I +K V                KN+E  K WGRDAQAKLGS L
Sbjct: 278  -RKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEE-IKPWGRDAQAKLGSRL 335

Query: 2815 IKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGL 2636
            ++LL ETAYVQPP++Q  D  P+++PAF H  KTI K+PG++  KR G IECD L+  GL
Sbjct: 336  LELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGL 395

Query: 2635 HSTARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKV 2456
              +A+HM+IPY+PML+ P+ WKGY KGG+LFLPSYVMRTHG+R+QQDA++ V  ++MQKV
Sbjct: 396  DRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKV 455

Query: 2455 FEALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXX 2276
            FEALDTLG TKWRVN++VL+ +ES+W +GGNIAGLVDR D+ IPEKP SED  E      
Sbjct: 456  FEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKW 515

Query: 2275 XXXXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSD 2096
                  K N ERH+QRCD ELKLSVARKM++E+GFYYPHNLDFRGRAYPMH HLNHLSSD
Sbjct: 516  SVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 575

Query: 2095 LCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERP 1916
            LCRGVLEFAEGRPLG++GLHWLKIHLANL+AGG+EKLS+D RL FV+NH+DDIFDSAE P
Sbjct: 576  LCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENP 635

Query: 1915 IEGKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDS 1736
            I G RWWL AEDPFQCLAACINLSE+LKSSSPH+V S+LPIHQDGSCNGLQHYAALGRDS
Sbjct: 636  INGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDS 695

Query: 1735 LEAAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQ 1556
            LEAAAVNLVAG++PADVYSEIAVRV NI+K+D  KDP ++P+A LAK+LIDQVDRKLVKQ
Sbjct: 696  LEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQ 755

Query: 1555 TVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIM 1376
            TVMTSVYGVT++GAREQIKRRLEE+G I+DD++LF A+CY A VT+ ALGE+FQAAR+IM
Sbjct: 756  TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIM 815

Query: 1375 GWLGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQ 1196
            GWLGDCAKV+ASENQPV+W TPLGLPVVQPY+K+ERHLIRTSLQVL+LQREGD V+ ++Q
Sbjct: 816  GWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQ 875

Query: 1195 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELY 1016
            RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACD++KMNQILREKFVELY
Sbjct: 876  RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELY 935

Query: 1015 DTPILENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
              P+LENL ES QTS+P+L FP LP RG+FDL++VL+SPYFFN
Sbjct: 936  SMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1281 bits (3314), Expect = 0.0
 Identities = 623/881 (70%), Positives = 730/881 (82%), Gaps = 2/881 (0%)
 Frame = -1

Query: 3523 ESVKRVFVDDPPWLSSFEANGI--LDDSDEKLGFREMERKKYNALRRRQVKMETEAWEKR 3350
            ES K+VF+ DPPW+S+    G+  L +   K+ F+++E++KYN LRRRQ++ ETEAWE+ 
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 3349 AEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGL 3170
            A+EYR LVREMCE KLAPNLPYVK L LGWFEPL EAI +EQ++++SK+QK++++  I L
Sbjct: 64   ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 3169 LPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWK 2990
            LPADKMAVIVMHKMMGLLMVG ++GCVR+VQAA+ +G AIEQEVRIHNFLE++K  +  K
Sbjct: 124  LPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQR-K 182

Query: 2989 KIDDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIK 2810
            K   +  ++M KE ++ RK V                K DE  K W R  QAKLGS LI+
Sbjct: 183  KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDET-KPWSRGTQAKLGSRLIE 241

Query: 2809 LLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHS 2630
            LL ETAYVQPPVNQ  D  P++RPAF H  KT+ K PG++  K+ G IECD L+  GL  
Sbjct: 242  LLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDG 301

Query: 2629 TARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFE 2450
            TA+HM+IPY PML+ P+ WKGY KGGHLFLPSYVMRTHG+RQQQ A+R+VP +QMQKVFE
Sbjct: 302  TAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFE 361

Query: 2449 ALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXX 2270
            ALDTLG TKWRVNRR+L  +E +W +GGNIAGLVDRED+ IPEKP S+DL EI       
Sbjct: 362  ALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSV 421

Query: 2269 XXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLC 2090
                K N ERH+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HL HLSSDLC
Sbjct: 422  RKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLC 481

Query: 2089 RGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIE 1910
            RGVLEF EGRPLGK+GL WLKIHLANLY+GG+EKLS+D RL FVENH+ +IFDSA+ P+ 
Sbjct: 482  RGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVN 541

Query: 1909 GKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLE 1730
            GKRWWLKAEDPFQCLAACINLSEAL S+SPH V SHLPIHQDGSCNGLQHYAALGRD+LE
Sbjct: 542  GKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLE 601

Query: 1729 AAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTV 1550
            AAAVNLVA ++P+DVYSEIAVRV  I+++D  KDP ++P A LAKIL+DQVDRKLVKQTV
Sbjct: 602  AAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTV 661

Query: 1549 MTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGW 1370
            MTSVYGVTY+GAREQIKRRLEE+G I+DD+LLF A+CY A VT+TALGE+FQAAR IM W
Sbjct: 662  MTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSW 721

Query: 1369 LGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRT 1190
            LGDCAK++ASE+QPV+W TPLGLPVVQPY+KTERHLI+TSLQ+L+LQREG  V  ++QRT
Sbjct: 722  LGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRT 781

Query: 1189 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDT 1010
            AFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA D+D MN+ILREKFVELY+ 
Sbjct: 782  AFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNM 841

Query: 1009 PILENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            PILENLLE FQTS+PTL+FP LP RG+FDL+KVL SPYFFN
Sbjct: 842  PILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1270 bits (3286), Expect = 0.0
 Identities = 639/984 (64%), Positives = 759/984 (77%), Gaps = 25/984 (2%)
 Frame = -1

Query: 3763 LASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSP 3584
            +AS ASFS  P+A  +    R S + +     N + +F+S     F   +   +  +H P
Sbjct: 1    MASTASFSPSPQAQTYTCSSRWSKAPKL----NHKFLFSSTSNSLFFKPSHSSS--THFP 54

Query: 3583 --------SIQSPTLSDPIREDL---ELGFQ------------ESVKRVFVDDPPWLSSF 3473
                     +  P L D I++++    + FQ            ES  R+F+ DPPW++S 
Sbjct: 55   LNLKPPPEPVHIPPLRDSIQDNIVENSMNFQIPMSEFHLITPQESAPRIFIQDPPWIASL 114

Query: 3472 EANGILDDSDE--KLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLA 3299
               GI   +++  KL  +E+ER+ YN LRRRQ+K ETEAWE+  +EY++L + M E KLA
Sbjct: 115  FLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLA 174

Query: 3298 PNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGL 3119
            PNLPYVK+LFLGWFEPL EAIA EQ+ Q++K+ KA++A +I LLPADKMA+IVMHKMMGL
Sbjct: 175  PNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGL 234

Query: 3118 LMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQ 2939
            +MVG  +GCV++VQAA+++G AIEQEVRIH+FLE++K  +  KK    +   +SKE +I 
Sbjct: 235  VMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQK-KKTGVADEDGLSKEKEIL 293

Query: 2938 RKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSD 2759
            RK V                  +E  K WGRD QAKLGS LI+LL ETAYVQPP++QL+D
Sbjct: 294  RKRVNGLIRRKRLNEVQKLLIKEE-MKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLAD 352

Query: 2758 CQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPR 2579
              P++RPAF H  K + K PG++  K  G IECD LV  GL  TA+HM+IPY+PML+ P+
Sbjct: 353  SPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPK 412

Query: 2578 SWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVL 2399
             WKGY KGGHLFLPSYVMRTHG+R+Q DA+R + R QMQKVFEALD LG TKWRVN++VL
Sbjct: 413  RWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVL 472

Query: 2398 SAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDI 2219
            S +ES+W  GGNIAGLV+REDV +P+K  SEDL EI           K N ERH+QRCD 
Sbjct: 473  SVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDT 532

Query: 2218 ELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGL 2039
            ELKLSVARKMKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GL
Sbjct: 533  ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL 592

Query: 2038 HWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAA 1859
             WLKIHLANLYAGG+EKLSY+ RL FV+NH+DDIFDSA  P+ G RWWL AEDP QCLAA
Sbjct: 593  RWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAA 652

Query: 1858 CINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYS 1679
            CINLSEAL S SPH V SHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV GD+PADVYS
Sbjct: 653  CINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYS 712

Query: 1678 EIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIK 1499
            EIA RV  I+K+D  KDP + P+A LA+IL++Q+DRKLVKQTVMTSVYGVTY+GAREQIK
Sbjct: 713  EIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIK 772

Query: 1498 RRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRW 1319
            RRLEE+G+I+DD+LLF A+CYAA VT+ ALGE+FQAAR IM WLGDCAKV+ASENQPVRW
Sbjct: 773  RRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRW 832

Query: 1318 VTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMM 1139
             TPLGLPVVQPY K+ERHLIRTSLQVL+LQRE + VD ++QRTAFPPNFVHSLDGSHMMM
Sbjct: 833  TTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMM 892

Query: 1138 TAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTL 959
            TA+ACRDAGL FAGVHDSFWTH CD+D+MN+ILREKFVELY  PILE+LLESFQ S+P L
Sbjct: 893  TALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQASYPAL 952

Query: 958  KFPALPPRGDFDLKKVLESPYFFN 887
             FP LP RGDFDL +VLESPYFFN
Sbjct: 953  TFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1269 bits (3284), Expect = 0.0
 Identities = 619/879 (70%), Positives = 734/879 (83%)
 Frame = -1

Query: 3523 ESVKRVFVDDPPWLSSFEANGILDDSDEKLGFREMERKKYNALRRRQVKMETEAWEKRAE 3344
            E  +R+FV DPPW SS    G+      +  +REM+++K+N LRRRQVK ETEAWE+  +
Sbjct: 137  EPRRRIFVQDPPWFSSIFLKGLYKRIKLQ-EYREMKKRKFNLLRRRQVKQETEAWERMVD 195

Query: 3343 EYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLP 3164
            EY+EL  +M E +LAPNLP++K LFLGWF PL+EAI  EQ++Q +K+QKA+YA +I LLP
Sbjct: 196  EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255

Query: 3163 ADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKI 2984
            ADKMAVIVMHKMMGL+M G ++ CV++VQAA+++G AIEQE+RIH+FLE++K  +  KKI
Sbjct: 256  ADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-KKI 314

Query: 2983 DDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLL 2804
              D  + +SKE ++ RK V                KN+E  K WGRD QAKLGS L++LL
Sbjct: 315  IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVELL 373

Query: 2803 IETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTA 2624
            IETAYVQ PVN      P++RPAF H  KTI+K PG++  KR G +ECD LV +GL  +A
Sbjct: 374  IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433

Query: 2623 RHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEAL 2444
            +HM+IPY+PML+ P+ WKGY KGG+LFLPSYVMRTHG+R+QQ+A+++V    M+KVFEAL
Sbjct: 434  KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493

Query: 2443 DTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXX 2264
            DTLG TKWRVN++VLS +ES+WV+GGNIAGLVDR DV IPEKPLSED+ E+         
Sbjct: 494  DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553

Query: 2263 XXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRG 2084
              K N ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNHLSSD+CRG
Sbjct: 554  AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613

Query: 2083 VLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGK 1904
            VLEFAEGRPLGK+GL WLKIHLANL++GG+EKLS+D RL FVENH+ +IFDSAE PI G 
Sbjct: 614  VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673

Query: 1903 RWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAA 1724
            RWWL AEDPFQCLAACINL+EALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR++LEAA
Sbjct: 674  RWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733

Query: 1723 AVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMT 1544
            AVNLVAG++PADVYSEIAVRV  I+K+D  KD    P A LAKILIDQVDRKLVKQTVMT
Sbjct: 734  AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMT 793

Query: 1543 SVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLG 1364
            SVYGVT++GAREQIKRRLEE+G I+DD+ LF A+CYAA VT+TALGE+F+AARSIMGWLG
Sbjct: 794  SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853

Query: 1363 DCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAF 1184
            DCAKV+ASENQPVRW TPLGLPVVQPY K ERHLIRTSLQVL+LQREG+ V+ ++QRTAF
Sbjct: 854  DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAF 913

Query: 1183 PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPI 1004
            PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACD+D+MNQILR+KFVELY+ P+
Sbjct: 914  PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPM 973

Query: 1003 LENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            LENLLESFQTS+PTL FP+LP RG+FDL++VLESPYFFN
Sbjct: 974  LENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1269 bits (3283), Expect = 0.0
 Identities = 621/879 (70%), Positives = 731/879 (83%)
 Frame = -1

Query: 3523 ESVKRVFVDDPPWLSSFEANGILDDSDEKLGFREMERKKYNALRRRQVKMETEAWEKRAE 3344
            E  +R+FV DPPW SS    G+      +  +REM+++K+N LRRRQVK ETEAWE+  +
Sbjct: 134  EPRRRIFVQDPPWFSSIFLKGLYKRIKLQ-EYREMKKRKFNLLRRRQVKQETEAWERMVD 192

Query: 3343 EYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLP 3164
            EY+EL  +M E +LAPNLP++K LFLGWF PL EAI  EQ++Q +K+QKA+YA +I LLP
Sbjct: 193  EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELLP 252

Query: 3163 ADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKI 2984
            ADK+AVIVMHKMMGL+M G ++ CV++VQAA+++G AIEQE+RIH+FLE++K  +  KKI
Sbjct: 253  ADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-KKI 311

Query: 2983 DDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLL 2804
              D  + +SKE ++ RK V                KN+E  K WGRD QAKLGS L++LL
Sbjct: 312  IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVELL 370

Query: 2803 IETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTA 2624
            IETAYVQ PVN      P++RPAF H  KTI+K PG++  KR G +ECD LV  GL  +A
Sbjct: 371  IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRSA 430

Query: 2623 RHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEAL 2444
            +HM+IPY+PML+ P+ WKGY KGG+LFLPSYVMRTHG+R+QQ+A+++V    M+KVFEAL
Sbjct: 431  KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 490

Query: 2443 DTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXX 2264
            DTLG TKWRVN++VLS +ES+WV+GGNIAGLVDR DV IPEKPLSED+ E+         
Sbjct: 491  DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRK 550

Query: 2263 XXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRG 2084
              K N ERH+QRCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNHLSSD+CRG
Sbjct: 551  AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 610

Query: 2083 VLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGK 1904
            VLEFAEGRPLGK+GL WLKIHLANL++GG+EKLS+D RL FVENH+ +IFDSAE PI G 
Sbjct: 611  VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 670

Query: 1903 RWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAA 1724
            RWWL AEDPFQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR++LEAA
Sbjct: 671  RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 730

Query: 1723 AVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMT 1544
            AVNLVAG++PADVYSEIAVRV  I+K+D  KDP   P A LAKILIDQVDRKLVKQTVMT
Sbjct: 731  AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 790

Query: 1543 SVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLG 1364
            SVYGVT++GAREQIKRRLEE+G I+DD+ LF A+CYAA VT+TALGE+F+AARSIMGWLG
Sbjct: 791  SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 850

Query: 1363 DCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAF 1184
            DCAKV+ASENQPVRW TPLGLPVVQPY K ERHLIRTSLQVL+LQREG  V+ ++QRTAF
Sbjct: 851  DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAF 910

Query: 1183 PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPI 1004
            PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACD+D+MNQILR+KFVELY+ PI
Sbjct: 911  PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPI 970

Query: 1003 LENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            LENLLESFQTS+PTL FP LP RG+FDL++VLESPYFFN
Sbjct: 971  LENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1267 bits (3278), Expect = 0.0
 Identities = 631/977 (64%), Positives = 758/977 (77%), Gaps = 18/977 (1%)
 Frame = -1

Query: 3763 LASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSP 3584
            +AS AS S    A+    W R       K  +    +FNS             +  +H P
Sbjct: 1    MASTASSSISATAT--HSWRRPPKLNPTKSLKTLHFLFNSTSNSNSLFFKPSLSSSTHFP 58

Query: 3583 --------SIQSPTLSDPIREDLELGFQESVK--------RVFVDDPPWLSSFEANGILD 3452
                     IQ   L+D ++++L    + S+K        R+F+ DPPW++S    G+  
Sbjct: 59   LSLRPPPDPIQFHPLNDSVQDNLVENLENSIKFQVPISEPRIFIQDPPWIASLFLKGMFK 118

Query: 3451 --DSDEKLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVK 3278
              + + K+  +E++R+KYN LRRRQ+K ETEAWEK  E+Y++L R M E KLAP+LPYVK
Sbjct: 119  KVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVK 178

Query: 3277 SLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDE 3098
            +LFLGWFEPL EAIA+EQ+ Q++K+ K ++A +I LLPADKMA+IVMHK+MGL+M+G  +
Sbjct: 179  ALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQD 238

Query: 3097 GCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVEXX 2918
            GCV++VQAA+++G AIEQEVRIH+FLE+SK  +  KK    +   +SKE +I RK V   
Sbjct: 239  GCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQR-KKTSVADEDGLSKEKEILRKRVNGL 297

Query: 2917 XXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRP 2738
                         K  ED K WGRD QAKLGS LI+LL ETA+VQPP++QL+D  P++RP
Sbjct: 298  IRRKRLVEVQKLLKK-EDMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRP 356

Query: 2737 AFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGK 2558
            AF H +K   K PG++  K  G IECD LV  GL  TA+HM+IPY+PML+ P+ WKGY K
Sbjct: 357  AFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDK 416

Query: 2557 GGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLW 2378
            GGHLFLPSYVMRTHG+R+Q D +R +  RQMQKVFEALD LG TKWR+N++VL+ +ES+W
Sbjct: 417  GGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIW 476

Query: 2377 VNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVA 2198
              GGNIAGLVDREDV +PEKP SED  EI           K N ERH+QRCD ELKLSVA
Sbjct: 477  ARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVA 536

Query: 2197 RKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHL 2018
            R+MKDEDGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GL WLKIHL
Sbjct: 537  RRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHL 596

Query: 2017 ANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEA 1838
            ANLY+GG+EKLSYD R++FV+NH+DDIFDSA  P+ G RWWL AEDP QCLAACINLSEA
Sbjct: 597  ANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEA 656

Query: 1837 LKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVL 1658
            L S SPH V SHLPIHQDGSCNGLQHYAALGRD+LEAAAVNLVAG++PADVYSEIAVRV 
Sbjct: 657  LNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVH 716

Query: 1657 NILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERG 1478
            +I+K+D  KDP ++P+A LAK+L++Q+DRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+G
Sbjct: 717  DIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG 776

Query: 1477 VISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLP 1298
            +I+DD+LLF A+CYAA VT+ ALGE+FQAAR IM WLGDCAKV+ASENQPVRW TPLGLP
Sbjct: 777  LITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLP 836

Query: 1297 VVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRD 1118
            VVQPY K+ERHLIRTSLQVL+LQRE + VD ++QRTAFPPNFVHSLDGSHMMMTA+ACRD
Sbjct: 837  VVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRD 896

Query: 1117 AGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPP 938
            AG+ FAGVHDSFWTHACD+D+MNQILRE FVELY  PILENLLESFQ ++P L FP LP 
Sbjct: 897  AGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPELTFPPLPE 956

Query: 937  RGDFDLKKVLESPYFFN 887
            RGDFDL++VL+SPYFFN
Sbjct: 957  RGDFDLQEVLKSPYFFN 973


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1265 bits (3274), Expect = 0.0
 Identities = 633/979 (64%), Positives = 758/979 (77%), Gaps = 20/979 (2%)
 Frame = -1

Query: 3763 LASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSP 3584
            + + ASF    +A IH     +  + R KC R     F S       +++      S S 
Sbjct: 1    MTATASFFPTLQAPIHGSNAWKKPTKRWKCERKTHPSFTSTFNSPLSSVSFPVNFDSTSQ 60

Query: 3583 SIQSPTLSDPIRE------DLELGFQ------------ESVKRVFVDDPPWLSSFEANGI 3458
            S+    L+D + E      D  +  Q            ES KR+F+ DPPW++S    G+
Sbjct: 61   SLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGL 120

Query: 3457 LD--DSDEKLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPY 3284
                  + KL F E+E++KYN LRRRQ+K ETEAWEK  EEY+EL REMCE KLAPNLPY
Sbjct: 121  YKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPY 180

Query: 3283 VKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGP 3104
            VK LFLGWFEPL  AI EEQ+ Q SK+QKA++A +I LL ADKMAVIVM+KMMGLLM+  
Sbjct: 181  VKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAA 240

Query: 3103 DEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVE 2924
             +GCV++VQAA+ +G AIEQEVRI + LE+++ ++  K   D E   ++KE ++ RK V 
Sbjct: 241  QDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE--CLTKEKEVLRKQVN 298

Query: 2923 XXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEI 2744
                           K +E +K+WGRD QAKLGS LI+LLIE+A++QPPV+Q +D  P+I
Sbjct: 299  GLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDI 357

Query: 2743 RPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGY 2564
            RPAF H  K + K PG+   K+ G +ECD +V  GL  TA+HM+IPY+PML+ P+ WKGY
Sbjct: 358  RPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGY 417

Query: 2563 GKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIES 2384
             KGGH FLPSYVMRTHG+ +QQDA++ +  +QMQKVFEALD LG TKWRVNR VLS +ES
Sbjct: 418  DKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVES 477

Query: 2383 LWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLS 2204
            LW  GGN AGLVDR+DV IPEKPL  DL E+           K N E H+QRCD+ELKLS
Sbjct: 478  LWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLS 536

Query: 2203 VARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKI 2024
            VARKMKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GLHWLKI
Sbjct: 537  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 596

Query: 2023 HLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLS 1844
            HLANLYAGG+EKLSYD RL FV++H+D+IFDSA  P+ G RWWL AEDPFQCLAAC+NLS
Sbjct: 597  HLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLS 656

Query: 1843 EALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVR 1664
            EALKSS+PH V S+LPIHQDGSCNGLQHYAALGRD+LEAAAVNLVAG++PADVYSEIA R
Sbjct: 657  EALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 716

Query: 1663 VLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE 1484
            V  I+ +D  KDP ++P+A LAK+LIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE
Sbjct: 717  VHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE 776

Query: 1483 RGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLG 1304
            +G+ISDD+L F+ASCYAA VT++ALGE+F+AAR IMGWLGDCAKV+A +NQPVRW TPLG
Sbjct: 777  KGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLG 836

Query: 1303 LPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVAC 1124
            LPVVQPY+K+ERHLIRTSLQVL+LQREG+ VD ++QRTAFPPNFVHSLDGSHMM+TA+AC
Sbjct: 837  LPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALAC 896

Query: 1123 RDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPAL 944
            RDAGL FAGVHDSFWTHACD+D+MN ILREKFVELY  P+LE+LLE F+T++P L FP+L
Sbjct: 897  RDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSL 956

Query: 943  PPRGDFDLKKVLESPYFFN 887
            P RGDFDL++VL+SPYFFN
Sbjct: 957  PGRGDFDLQEVLKSPYFFN 975


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1264 bits (3272), Expect = 0.0
 Identities = 619/881 (70%), Positives = 723/881 (82%), Gaps = 2/881 (0%)
 Frame = -1

Query: 3523 ESVKRVFVDDPPWLSSFEANGI--LDDSDEKLGFREMERKKYNALRRRQVKMETEAWEKR 3350
            ES KRVF+ D PW+S+    G   + +   KL  +++E++KYN LRRRQ++ ETEAWE+ 
Sbjct: 104  ESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERM 163

Query: 3349 AEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGL 3170
            AEEY  LV+EMCE KLAPNLPYVKSLFLGWFEPL EAI  EQ+L++SK+QK++++  I L
Sbjct: 164  AEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIEL 223

Query: 3169 LPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWK 2990
            LPADKMAVIVMHKMMGL+MVG ++GCVR+VQAA+ +G AIEQEVRIHNFLE++K  +  K
Sbjct: 224  LPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQR-K 282

Query: 2989 KIDDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIK 2810
            K   D  +SM KE ++ RK V                  DE  K W RD QAKLGS LI+
Sbjct: 283  KTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDET-KPWNRDKQAKLGSRLIE 341

Query: 2809 LLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHS 2630
            LL ETAYVQPPV+Q     P++RPAF H  K++ K PG++  K+ G IECD L+  GL  
Sbjct: 342  LLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDG 401

Query: 2629 TARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFE 2450
            TA+HM+IPY PML+ P+ W+GY KGGHLFLPSY+MRTHG+RQQQDA+R+VP +QMQKVFE
Sbjct: 402  TAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFE 461

Query: 2449 ALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXX 2270
            ALDTLG TKWRVN +VL  +E +W +GGN AGLV+R D+ IPEK  S+DL EI       
Sbjct: 462  ALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSV 521

Query: 2269 XXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLC 2090
                K N ERH+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HL HLSSDLC
Sbjct: 522  RKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLC 581

Query: 2089 RGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIE 1910
            RGVLEFAEGRPLGK+GL WLKIHLANLY+GG+EKLS+D RL FVENH+ +IFDSAE P+ 
Sbjct: 582  RGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVN 641

Query: 1909 GKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLE 1730
            GKRWWL AEDPFQCLAACINLSEALKS+SPH V SHLPIHQDGSCNGLQHYAALGRDS E
Sbjct: 642  GKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQE 701

Query: 1729 AAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTV 1550
            AAAVNLVA ++P+DVYSEIA RV  I+++D  KDP ++P A LAK+LID+VDRKLVKQTV
Sbjct: 702  AAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTV 761

Query: 1549 MTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGW 1370
            MTSVYGVTY+GAREQIKRRLEE+G I+DD++LF A+CYAA VT+TALGE+FQAAR IMGW
Sbjct: 762  MTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGW 821

Query: 1369 LGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRT 1190
            LGDCAKV+ASE+QPVRW TPLGLPVVQPY+KT+RHLIRTSLQVL+LQREG  V  ++QRT
Sbjct: 822  LGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRT 881

Query: 1189 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDT 1010
            AFPPNFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHA D D MN+ILREKFVELY+ 
Sbjct: 882  AFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNM 941

Query: 1009 PILENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            PILENLLE FQTS+PTLKFP+LP RG+FDL++VL SPYFFN
Sbjct: 942  PILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 632/979 (64%), Positives = 757/979 (77%), Gaps = 20/979 (2%)
 Frame = -1

Query: 3763 LASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSP 3584
            + + ASF    +A IH     +  + R KC R     F S       +++      S S 
Sbjct: 1    MTATASFFPTLQAPIHGSNAWKKPTKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQ 60

Query: 3583 SIQSPTLSDPIRE------DLELGFQ------------ESVKRVFVDDPPWLSSFEANGI 3458
            S+    L+D + E      D  +  Q            ES KR+F+ DPPW++S    G+
Sbjct: 61   SLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGL 120

Query: 3457 LD--DSDEKLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPY 3284
                  + KL F E+E++KYN LRRRQ+K ETEAWEK  EEY+EL REMCE KLAPNLPY
Sbjct: 121  YKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPY 180

Query: 3283 VKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGP 3104
            VK LFLGWFEPL  AI EEQ+ Q SK+QKA++A +I LL ADKMA IVM+KMMGLLM+  
Sbjct: 181  VKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAA 240

Query: 3103 DEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVE 2924
             +GCV++VQAA+ +G AIEQEVRI + LE+++ ++  K   D E   ++KE ++ RK V 
Sbjct: 241  QDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE--CLTKEKEVLRKQVN 298

Query: 2923 XXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEI 2744
                           K +E +K+WGRD QAKLGS LI+LLIE+A++QPPV+Q +D  P+I
Sbjct: 299  GLIRRRKLKEVQKLLKKEE-FKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDI 357

Query: 2743 RPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGY 2564
            RPAF H  K + K PG+   K+ G +ECD +V  GL  TA+HM+IPY+PML+ P+ WKGY
Sbjct: 358  RPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGY 417

Query: 2563 GKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIES 2384
             KGGH FLPSYVMRTHG+ +QQDA++ +  +QMQKVFEALD LG TKWRVNR VLS +ES
Sbjct: 418  DKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVES 477

Query: 2383 LWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLS 2204
            LW  GGN AGLVDR+DV IPEKPL  DL E+           K N E H+QRCD+ELKLS
Sbjct: 478  LWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLS 536

Query: 2203 VARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKI 2024
            VARKMKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GLHWLKI
Sbjct: 537  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 596

Query: 2023 HLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLS 1844
            HLANLYAGG+EKLSYD RL FV++H+D+IFDSA  P+ G RWWL AEDPFQCLAAC+NLS
Sbjct: 597  HLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLS 656

Query: 1843 EALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVR 1664
            EALKSS+PH V S+LPIHQDGSCNGLQHYAALGRD+LEAAAVNLVAG++PADVYSEIA R
Sbjct: 657  EALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 716

Query: 1663 VLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE 1484
            V  I+ +D  KDP ++P+A LAK+LIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE
Sbjct: 717  VHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEE 776

Query: 1483 RGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLG 1304
            +G+ISDD+L F+ASCYAA VT++ALGE+F+AAR IMGWLGDCAKV+A +NQPVRW TPLG
Sbjct: 777  KGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLG 836

Query: 1303 LPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVAC 1124
            LPVVQPY+K+ERHLIRTSLQVL+LQREG+ VD ++QRTAFPPNFVHSLDGSHMM+TA+AC
Sbjct: 837  LPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALAC 896

Query: 1123 RDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPAL 944
            RDAGL FAGVHDSFWTHACD+D+MN ILREKFVELY  P+LE+LLE F+T++P L FP+L
Sbjct: 897  RDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSL 956

Query: 943  PPRGDFDLKKVLESPYFFN 887
            P RGDFDL++VL+SPYFFN
Sbjct: 957  PGRGDFDLQEVLKSPYFFN 975


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score = 1263 bits (3267), Expect = 0.0
 Identities = 621/914 (67%), Positives = 733/914 (80%), Gaps = 12/914 (1%)
 Frame = -1

Query: 3592 HSPSIQSP-----TLSDPIREDLE--LGFQESVKRVFVDDPPWLSSFEANGILDDSDE-- 3440
            H+P++  P     +  D  R +L+     QES  RVF+ DPPW+SS     +L  S    
Sbjct: 30   HNPALLLPPPVSDSSDDNFRGNLDKVATLQESKDRVFIQDPPWISSLFMKNLLFRSRNRG 89

Query: 3439 --KLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFL 3266
              K+ F+EMER+KY  LRRRQVK ETEAWE + EEYREL REMCE KLAPNLPYVK L L
Sbjct: 90   GVKIEFQEMERRKYYLLRRRQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLIL 149

Query: 3265 GWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEG-CV 3089
            GWFEPL EAI +EQ  Q SK+ KA++A +I  LPADKMAVIVMHKMMGLLM+G  E  CV
Sbjct: 150  GWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCV 209

Query: 3088 RLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVEXXXXX 2909
            R+V+AA+ +G A+E EVRIH+FLE+ KK+   ++I D+     S E  I RK V+     
Sbjct: 210  RVVEAAVQIGVAVENEVRIHSFLEKMKKNEK-REIGDESQVDSSNEAVIMRKRVKSLIKR 268

Query: 2908 XXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFS 2729
                      +++E +KSWGRD QAKLG CLI+LL ++AYVQPPVNQ +D  P++RPAF 
Sbjct: 269  NRVIEVHKLVRSEE-FKSWGRDIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFR 327

Query: 2728 HTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGH 2549
            H  K   + PG+   KR G IECD LV  GL  T +HM+IPY+PML+ P+ WKGY +GG+
Sbjct: 328  HIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGY 387

Query: 2548 LFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNG 2369
            LFLPSY+MRTHG+R QQDA++TV  +QMQKV+EALDTLG TKWRVN+R+L+ +E++W  G
Sbjct: 388  LFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIWAAG 447

Query: 2368 GNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKM 2189
            GNIAGLV+RED+ IPE  LSED+ E            K N ERH+QRCD ELKLSVARKM
Sbjct: 448  GNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVARKM 507

Query: 2188 KDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANL 2009
            KDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLGK+GL WLKIH+ANL
Sbjct: 508  KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANL 567

Query: 2008 YAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKS 1829
            Y GG+EKLSYD R+ FVEN++ +IFDSA+  + G RWWLKAEDPFQCLAACINL EALKS
Sbjct: 568  YGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKS 627

Query: 1828 SSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNIL 1649
             SPH V SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGD+P+DVYSEIA RV NI+
Sbjct: 628  PSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIM 687

Query: 1648 KKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVIS 1469
            K+D  KDP +D  A +AK+LI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+G+I+
Sbjct: 688  KRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIT 747

Query: 1468 DDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQ 1289
            DD+LLF A+CYAA VT+ ALGE+FQAAR+IM WLGDCAK++ASEN+PVRW TPLGLPVVQ
Sbjct: 748  DDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQ 807

Query: 1288 PYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 1109
            PY K++RH+IRTSLQVL+LQREGD V+ ++QRTAFPPNFVHSLDGSHMMMTA+ACRDAGL
Sbjct: 808  PYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGL 867

Query: 1108 HFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGD 929
             FAGVHDSFWTHACD+D+MNQILR+KFV+LY  PILENLLESF+TS+PTLKFP LP RGD
Sbjct: 868  RFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPILENLLESFETSYPTLKFPPLPNRGD 927

Query: 928  FDLKKVLESPYFFN 887
            F L++V+ESPYFFN
Sbjct: 928  FLLEQVIESPYFFN 941


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1258 bits (3255), Expect = 0.0
 Identities = 615/854 (72%), Positives = 724/854 (84%), Gaps = 3/854 (0%)
 Frame = -1

Query: 3439 KLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFLGW 3260
            K+  +E+E++KYN LRRRQVK ETEAWEK  EEYREL REMCE KLAPNLPYVK LFLGW
Sbjct: 7    KIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGW 66

Query: 3259 FEPLTEAIAEEQRLQE--SKRQKASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEGCVR 3086
            FEP+ EAIA EQ++Q+  SK+ +A+YA +I LLPADKMAVIVMHKMMGL+M   + G V+
Sbjct: 67   FEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQ 126

Query: 3085 LVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDIQRKHVEXXXXXX 2906
            +VQAA+++G AIEQEVRIHNFLE++K  +  +K   DE + +SKE +I +K V       
Sbjct: 127  VVQAAVHIGVAIEQEVRIHNFLEKTKNYQ--RKKTTDEVQGLSKEKEILKKRVNSLIRRR 184

Query: 2905 XXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSH 2726
                     KN+E  K WGRDAQAKLGS L++LL ETAYVQPP++Q  D  P+++PAF H
Sbjct: 185  RLVEVQKLVKNEE-IKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRH 243

Query: 2725 TIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGHL 2546
              KTI K+PG++  KR G IECD L+  GL  +A+HM+IPY+PML+ P+ WKGY KGG+L
Sbjct: 244  KFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYL 303

Query: 2545 FLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNGG 2366
            FLPSYVMRTHG+R+QQDA++ V  ++MQKVFEALDTLG TKWRVN++VL+ +ES+W +GG
Sbjct: 304  FLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGG 363

Query: 2365 NIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKMK 2186
            NIAGLVDR D+ IPEKP SED  E            K N ERH+QRCD ELKLSVARKM+
Sbjct: 364  NIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKME 423

Query: 2185 DEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLY 2006
            +E+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG++GLHWLKIHLANL+
Sbjct: 424  NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLF 483

Query: 2005 AGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKSS 1826
            AGG+EKLS+D RL FV+NH+DDIFDSAE PI G RWWL AEDPFQCLAACINLSE+LKSS
Sbjct: 484  AGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSS 543

Query: 1825 SPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNILK 1646
            SPH+V S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAG++PADVYSEIAVRV NI+K
Sbjct: 544  SPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMK 603

Query: 1645 KDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISD 1466
            +D  KDP ++P+A LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIKRRLEE+G I+D
Sbjct: 604  RDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 663

Query: 1465 DQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQP 1286
            D++LF A+CY A VT+ ALGE+FQAAR+IMGWLGDCAKV+ASENQPV+W TPLGLPVVQP
Sbjct: 664  DRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQP 723

Query: 1285 YHKTERHLIRTSLQVLSLQREGD-CVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 1109
            Y+K+ERHLIRTSLQVL+LQREGD  V+ ++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL
Sbjct: 724  YYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 783

Query: 1108 HFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGD 929
            HFAGVHDSFWTHACD++KMNQILREKFVELY  P+LENL ES QTS+P+L FP LP RG+
Sbjct: 784  HFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGN 843

Query: 928  FDLKKVLESPYFFN 887
            FDL++VL+SPYFFN
Sbjct: 844  FDLREVLKSPYFFN 857


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1247 bits (3226), Expect = 0.0
 Identities = 628/993 (63%), Positives = 759/993 (76%), Gaps = 34/993 (3%)
 Frame = -1

Query: 3763 LASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFR------------- 3623
            ++S ASFS  P+  I  +W +   S +K        +F      Q R             
Sbjct: 1    MSSTASFSPIPQVQIQKQWRKPLKSHKKASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSS 60

Query: 3622 -----NLNLR------GAVCSHSPSIQSPTLSDPIREDL----ELGFQESVK-----RVF 3503
                  L+L       G      PS QS  + D   E+L    +  F+ S K     R+F
Sbjct: 61   NSFPSTLSLPSLTPKLGKTSFFQPSPQSQIILDSPEEELAEKMDGHFRNSDKIKGSSRIF 120

Query: 3502 VDDPPWLSSFEANGILDDSDE-KLGFREMERKKYNALRRRQVKMETEAWEKRAEEYRELV 3326
            + DPPW+++    G++D +   +L F+E+ER+KYN LRRRQ+K ETEAWE   EEYRE V
Sbjct: 121  MQDPPWVNTLFMKGLVDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFV 180

Query: 3325 REMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAV 3146
            REM + KLAPNLP VK+LFLGWFEPL +AI +EQ+ Q S++QKA Y  +I +LPADKMAV
Sbjct: 181  REMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAV 240

Query: 3145 IVMHKMMGLLMVGPDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHK 2966
            IVMHKMM LLMVG D GCVRLVQAA+ +G AIEQE++IH+FLE++K  R   K   D  +
Sbjct: 241  IVMHKMMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIR---KNASDLPE 297

Query: 2965 SMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYV 2786
             + KE +IQR  V+                + ED KSW +D QAKLGS LI+LLI+TAY+
Sbjct: 298  DLLKEKEIQRNRVKSLIKRKRLFEAAKLVTS-EDSKSWSQDTQAKLGSRLIELLIDTAYI 356

Query: 2785 QPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIP 2606
            Q P +Q +D  P++RPAF H  K +  E G++  KR G IECD LV KG+  +AR+M+IP
Sbjct: 357  QHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIP 416

Query: 2605 YMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRT 2426
            Y+PMLI P++WKGY KGG+LFLPSYVMRTHG+R+QQDA+R  P +QMQKVFEAL+TLG T
Sbjct: 417  YVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHT 476

Query: 2425 KWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNH 2246
            KWR+NR+VL  +E+LW +GGNI GLV+ +DV +PEKPL+ED  EI           K N 
Sbjct: 477  KWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINR 536

Query: 2245 ERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAE 2066
            ERHA RCD+ELK+SVA+KMKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFA 
Sbjct: 537  ERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAS 596

Query: 2065 GRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKA 1886
            GRPLGK GLHWLKIHLAN+YAGG++KLSY+ R  FVENH++++FDSA  PI G RWWL A
Sbjct: 597  GRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSA 656

Query: 1885 EDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVA 1706
            EDPFQCLAACI+L+ AL SSSPH+  S+LPIHQDGSCNGLQHYAALGRDS EAAAVNLVA
Sbjct: 657  EDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVA 716

Query: 1705 GDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVT 1526
            G++PADVYSEIAVRV  I++KD  KDP +DP A LAK+L+DQVDRKLVKQTVMTSVYGVT
Sbjct: 717  GEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVT 776

Query: 1525 YIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVM 1346
            ++GAREQIKRRLEE+GVI+DD+LLF A+CY+A VTM+ALG++FQAAR IM WLGDCAKV+
Sbjct: 777  FVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVI 836

Query: 1345 ASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVH 1166
            ASENQPVRW TPLGLPVVQPY K++RHLI+TSLQVL+LQ+EG+ ++ K+QRTAFPPN+VH
Sbjct: 837  ASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVH 896

Query: 1165 SLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLE 986
            SLDG+HMMMTAVACRDAGL FAGVHDSFWTHACD++KMNQILR KFVELY+ PILENLLE
Sbjct: 897  SLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLE 956

Query: 985  SFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            SFQT++P   FP LP RGDFDL++VLESPYFFN
Sbjct: 957  SFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 611/886 (68%), Positives = 721/886 (81%), Gaps = 6/886 (0%)
 Frame = -1

Query: 3526 QESVKRVFVDDPPWLSSFEANGILDDSDEKLG----FREMERKK-YNALRRRQVKMETEA 3362
            +ES KRVF+ DPPW+SS   N +   + +  G    FRE+ER++ Y  LRRRQ+K ETEA
Sbjct: 95   KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 154

Query: 3361 WEKRAEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQ 3182
            WE+  EEYREL REMCE KLAPNLPYVK L LGWFEPL +AI +EQ  + + + +A++A 
Sbjct: 155  WEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAP 214

Query: 3181 YIGLLPADKMAVIVMHKMMGLLMVG-PDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKK 3005
            +I  LPADKMAVIVMHK+MGLLM+G  +E CV++VQAA+ +G A+E EVRIHNFLE++KK
Sbjct: 215  HIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 274

Query: 3004 SRGWKKIDDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLG 2825
             +          + MS+E  I RK V+               K++E  +SWGRD QAKLG
Sbjct: 275  LQK-HMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEP-ESWGRDTQAKLG 332

Query: 2824 SCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVR 2645
              L++LL ETAYVQPPV+Q +D  P+IRPAF H  +   ++PG+   K+ G IECD LV 
Sbjct: 333  CRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVV 392

Query: 2644 KGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQM 2465
             G+  T + M+IPY+PML+ P+ W+GY KGG+LFLPSY+MRTHG+R+QQDA+R+VP +QM
Sbjct: 393  AGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQM 452

Query: 2464 QKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXX 2285
            Q+V+EALDTLG TKWRVN+R+LS +ES+W  GGNIAGLVDR+DV IPE   S+D++E+  
Sbjct: 453  QQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKK 511

Query: 2284 XXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHL 2105
                     K N E H+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLNHL
Sbjct: 512  WKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHL 571

Query: 2104 SSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSA 1925
            SSDLCRG+LEFAEGRPLGK+GL WLKIHLA+LYAGGIEKL YD RL FVENH+DDI DSA
Sbjct: 572  SSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSA 631

Query: 1924 ERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALG 1745
              P+ G RWWL AEDPFQCLAACINLSEALKSSSPH V SHLPIHQDGSCNGLQHYAALG
Sbjct: 632  NNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALG 691

Query: 1744 RDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKL 1565
            RDS+EAAAVNLVAGD+PADVY+EIA+RV +I++ D +KDP +DP+A LAK+LIDQVDRKL
Sbjct: 692  RDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKL 751

Query: 1564 VKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAAR 1385
            VKQTVMTSVYGVTY+GAREQIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQAAR
Sbjct: 752  VKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAAR 811

Query: 1384 SIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDT 1205
              M WLGDCAKV+ASENQPVRW TPLGLPVVQPY KT+RH+IRTSLQVL+LQREGD V+ 
Sbjct: 812  GTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEV 871

Query: 1204 KRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFV 1025
            ++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACD+D+MN+ILREKFV
Sbjct: 872  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFV 931

Query: 1024 ELYDTPILENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            ELY  PILE+LLESFQ S+P L FP LP RGDFDL +VLESPYFFN
Sbjct: 932  ELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1238 bits (3204), Expect = 0.0
 Identities = 629/987 (63%), Positives = 766/987 (77%), Gaps = 27/987 (2%)
 Frame = -1

Query: 3766 ELASMASFSNPPRASIHDKWPRESVSMRKKCF----RNRRLVFNSRCEGQFRNLNL---R 3608
            +LAS AS+S  P +S   +W R++   +K CF     ++  +  S+     + L L   +
Sbjct: 37   KLASSASYSPSPPSS---QW-RKTQKSQKNCFLYGIHSQEFLKLSQTSSFPKTLKLPVIQ 92

Query: 3607 GAVCSHSPSIQSPT---LSDPIREDLEL-----GF-----QESVKRVFVDDPPWLSSFEA 3467
              +  HS  +   T   L++ + E + L     G+     +ES KRVF+ DPPW+SS   
Sbjct: 93   LPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFM 152

Query: 3466 NGILDDSDEKLG----FREMERKK-YNALRRRQVKMETEAWEKRAEEYRELVREMCENKL 3302
            N +   + +  G    FRE+ER++ Y  LRRRQ+K ETEAWE+  EEYREL REMCE KL
Sbjct: 153  NSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKL 212

Query: 3301 APNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMG 3122
            APNLPYVK L LGWFEPL +AI +EQ  + +++ + +YA +I  LPADKMAVIVMHK+MG
Sbjct: 213  APNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMG 272

Query: 3121 LLMVG-PDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDE-HKSMSKEG 2948
            LLM+G  +E CV++VQAA+ +G A+E EVRIHNF+E++KK +  K +   +  + MS+E 
Sbjct: 273  LLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQ--KHMSGAQGQEDMSRET 330

Query: 2947 DIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQ 2768
             I RK V+               +++E  +SWGRD QAKLG  L++LL ETAYVQPPV+Q
Sbjct: 331  MILRKRVKSLIKRNRVVEVRKLMQSEEP-ESWGRDTQAKLGCRLLELLTETAYVQPPVDQ 389

Query: 2767 LSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLI 2588
             +D  P+IRPAF H  +   ++PG+   K+ G IECD LV  G+  T + M+IPY+PML+
Sbjct: 390  SADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLV 449

Query: 2587 LPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNR 2408
             P+ W+GY KGG+LFLPSY+MRTHG+R+QQDA+R+VP +QMQ+V+EALDTLG TKWRVN+
Sbjct: 450  PPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNK 509

Query: 2407 RVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQR 2228
            R+LS +ES+W  GGNIAGLVDR+DV IPE   S+D++E+           K N E H+QR
Sbjct: 510  RILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMELKRWKWRVRKAKKINQELHSQR 568

Query: 2227 CDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGK 2048
            CD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGK
Sbjct: 569  CDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGK 628

Query: 2047 AGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQC 1868
            +GL WLK+HLA+LYAGGIEKL YD R+ FVENH+DDI DSA  P+ G RWWL AEDP QC
Sbjct: 629  SGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQC 688

Query: 1867 LAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPAD 1688
            LAACINLSEALKS SPH V SHLPIHQDGSCNGLQHYAALGRDS+EAAAVNLVAG++PAD
Sbjct: 689  LAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPAD 748

Query: 1687 VYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGARE 1508
            VY+EIA+RV +I++ D  KDP +DP+A LAK+LIDQVDRKLVKQTVMTSVYGVTY+GARE
Sbjct: 749  VYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGARE 808

Query: 1507 QIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQP 1328
            QIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQAAR  M WLGDCAKV+ASENQP
Sbjct: 809  QIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQP 868

Query: 1327 VRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSH 1148
            VRW TPLGLPVVQPY KT+RH+IRTSLQVL+LQREGD V+ ++QRTAFPPNFVHSLDGSH
Sbjct: 869  VRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSH 928

Query: 1147 MMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSF 968
            MMMTAVACRDAGLHFAGVHDSFWTHACD+D+MN+ILREKFVELY  PILE+LLESFQ S+
Sbjct: 929  MMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESY 988

Query: 967  PTLKFPALPPRGDFDLKKVLESPYFFN 887
            P L FP LP RGDFDL++VLESPYFFN
Sbjct: 989  PALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 624/985 (63%), Positives = 759/985 (77%), Gaps = 25/985 (2%)
 Frame = -1

Query: 3766 ELASMASFSNPPRASIHDKWPRESVSMRKKCFR---NRRLVFNSRCEGQFRNLNL---RG 3605
            +LAS AS+S  P +S   +W +   S +   F    N+  +  S+     + L L   + 
Sbjct: 29   KLASSASYSPTPASS---QWRKAQKSQKNCTFHGIYNQEFLKLSQTSSFPKTLKLPIIQL 85

Query: 3604 AVCSHSPSIQSPT---LSDPIREDLEL-----GF-----QESVKRVFVDDPPWLSSFEAN 3464
             +  HS  +   T   L++ + E + L     G+     +ES KRVF+ DPPW+SS   N
Sbjct: 86   PITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMN 145

Query: 3463 GILDDSDEKLG----FREMERKK-YNALRRRQVKMETEAWEKRAEEYRELVREMCENKLA 3299
             +   + +  G    FRE+ER++ Y  LRRRQ+K ETEAWE+  EEYREL REMCE KLA
Sbjct: 146  NLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLA 205

Query: 3298 PNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQYIGLLPADKMAVIVMHKMMGL 3119
            PNLPYVK L LGWFEPL +AI  EQ  + +++ + +YA +I  LPADKMAVIVMHK+MGL
Sbjct: 206  PNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGL 265

Query: 3118 LMVG-PDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKEGDI 2942
            LM+G  +E CV++VQAA+ +G A+E EVRIHNF+E++KK +          + MS+E  I
Sbjct: 266  LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQK-HMTGAQGQEDMSRETMI 324

Query: 2941 QRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLS 2762
             RK V+               +++E  +SWGRD QAKLG  L++LL ETAYVQPPV+Q +
Sbjct: 325  LRKRVKSLIKRNRVVEVRKLMQSEEP-ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSA 383

Query: 2761 DCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILP 2582
            D  P+IRPAF H  +   ++PG+   K+ G IECD LV  G+  T + M+IPY+PML+ P
Sbjct: 384  DTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPP 443

Query: 2581 RSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRV 2402
            + W+GY KGG+LFLPSY+MRTHG+R+QQDA+R+VP +QMQ+V+EALDTLG TKWRVN+R+
Sbjct: 444  KKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRI 503

Query: 2401 LSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCD 2222
            LS +E++W  GGNIAGLVDR+DV IPE   S+D++E+           K N E H+QRCD
Sbjct: 504  LSVVETIWAGGGNIAGLVDRKDVPIPELH-SDDIMELKRWKWRVRKAKKINQELHSQRCD 562

Query: 2221 IELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAG 2042
             ELKLSVARK++DE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGK+G
Sbjct: 563  TELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSG 622

Query: 2041 LHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLA 1862
            L WLK+HLA+LYAGGIEKL YD R+ FVENH+DDI DSA  P+ G RWWL AEDP QCLA
Sbjct: 623  LRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLA 682

Query: 1861 ACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVY 1682
            ACINLSEA+KS SPH V SHLPIHQDGSCNGLQHYAALGRDS+EAAAVNLVAG++PADVY
Sbjct: 683  ACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVY 742

Query: 1681 SEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQI 1502
            +EIA+RV +I++ D  KDP +DP+A LAK+LIDQVDRKLVKQTVMTSVYGVTY+GAREQI
Sbjct: 743  TEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQI 802

Query: 1501 KRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVR 1322
            KRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQAAR  M WLGDCAKV+ASENQPVR
Sbjct: 803  KRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVR 862

Query: 1321 WVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMM 1142
            W TPLGLPVVQPY KT+RH+IRTSLQVL+LQREGD V+ ++QRTAFPPNFVHSLDGSHMM
Sbjct: 863  WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMM 922

Query: 1141 MTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPT 962
            MTAVACRDAGLHFAGVHDSFWTHACD+D+MN+ILREKFVELY  PILE+LLESFQ S+P 
Sbjct: 923  MTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPA 982

Query: 961  LKFPALPPRGDFDLKKVLESPYFFN 887
            L FP LP RGDFDL++VLESPYFFN
Sbjct: 983  LTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1232 bits (3187), Expect = 0.0
 Identities = 604/886 (68%), Positives = 717/886 (80%), Gaps = 6/886 (0%)
 Frame = -1

Query: 3526 QESVKRVFVDDPPWLSSFEANGILDDSDEKLG----FREMERKK-YNALRRRQVKMETEA 3362
            +ES KRVF+ DPPW+SS   N +   + +  G    FRE+ER++ Y  LRRRQ+K ETEA
Sbjct: 94   KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEA 153

Query: 3361 WEKRAEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEEQRLQESKRQKASYAQ 3182
            WE+  EEYREL REMCE KLAPNLPYVK L LGWFEPL +AI +EQ  + + + +A++A 
Sbjct: 154  WEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAP 213

Query: 3181 YIGLLPADKMAVIVMHKMMGLLMVG-PDEGCVRLVQAAIYVGDAIEQEVRIHNFLERSKK 3005
            +I  LPADKMAVIVMHK+MGLLM+G  +E CV++VQAA+ +G A+E EVRIHNFLE++KK
Sbjct: 214  HIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKK 273

Query: 3004 SRGWKKIDDDEHKSMSKEGDIQRKHVEXXXXXXXXXXXXXXXKNDEDYKSWGRDAQAKLG 2825
             +          + MSKE  I RK V+               K++E  +SWGRD QAKLG
Sbjct: 274  LQK-HMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEP-ESWGRDTQAKLG 331

Query: 2824 SCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKEPGRRGAKRCGFIECDSLVR 2645
              L++LL ETAYVQ PV+Q +D  P+IRPAF H  K   ++PG+   K+ G IECD LV 
Sbjct: 332  CRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVV 391

Query: 2644 KGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMRTHGARQQQDAIRTVPRRQM 2465
             G+  T + M+IPY+PML+ P+ W+GY KGG+LFLPSY+MRTHG+R+QQDA+R VP +QM
Sbjct: 392  AGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQM 451

Query: 2464 QKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDREDVFIPEKPLSEDLLEIXX 2285
            Q+V+EALDTLG TKWRVN+R+L+ +ES+W  GGNIAGLVDR+DV IPE   S+D++E+  
Sbjct: 452  QQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKK 511

Query: 2284 XXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYPHNLDFRGRAYPMHSHLNHL 2105
                     K N E H+QRCD ELKLSVARK+KDE+GFYYPHNLDFRGRAYPMH HLNHL
Sbjct: 512  WKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHL 571

Query: 2104 SSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLSYDMRLTFVENHVDDIFDSA 1925
            SSDLCRG+LEFAEGRPLGK+GL WLKIHLA+LYAGG+EKL YD RL FVENH+ DI DSA
Sbjct: 572  SSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSA 631

Query: 1924 ERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSHLPIHQDGSCNGLQHYAALG 1745
              P+ G RWWL AEDPFQCLAACINLSEALKSSSPH V SHLPIHQDGSCNGLQHYAALG
Sbjct: 632  NNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALG 691

Query: 1744 RDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPGSDPSAFLAKILIDQVDRKL 1565
            RDS+EAAAVNLVAG++PADVY+EIA+RV +I++ D +KDP  DP+A LAK+LIDQVDRKL
Sbjct: 692  RDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKL 751

Query: 1564 VKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQASCYAASVTMTALGEMFQAAR 1385
            VKQTVMTSVYGVTY+GAREQIKRRLEE+G+I DD+LLF ASCYAA VT+ ALGE+FQAAR
Sbjct: 752  VKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAAR 811

Query: 1384 SIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHLIRTSLQVLSLQREGDCVDT 1205
              M WLGDCAKV+A ENQPVRW TPLGLPVVQPY KT+RH+IRTSLQ+L+LQREGD V+ 
Sbjct: 812  GTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEV 871

Query: 1204 KRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDIDKMNQILREKFV 1025
            ++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACD+D+MN+ILREKFV
Sbjct: 872  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFV 931

Query: 1024 ELYDTPILENLLESFQTSFPTLKFPALPPRGDFDLKKVLESPYFFN 887
            ELY  PILE+LLE+FQ S+P L FP LP RGDF+L++VLESPYFFN
Sbjct: 932  ELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score = 1229 bits (3181), Expect = 0.0
 Identities = 607/965 (62%), Positives = 751/965 (77%), Gaps = 7/965 (0%)
 Frame = -1

Query: 3760 ASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSPS 3581
            AS +S S+    S+H+K    SV             F+      F N +      S++ +
Sbjct: 54   ASSSSSSSSTSLSVHEKPISNSVH------------FHGNLIESFENQD-----SSYAGT 96

Query: 3580 IQSPTLSDPIREDLELGFQESVKRVFVDDPPWLSSFEANGI--LDDSDEKLGFREMERKK 3407
            I+  +L + +   +E       +R+F+ DPPW+S+    G+  + D   K+  + ++++K
Sbjct: 97   IKGASLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTVKIEHKYIDKRK 156

Query: 3406 YNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEE 3227
            +++LRRRQVK ETEAWEK  +EYR+L +EMCE  LAPNLPYVK +FLGWF+PL + I  E
Sbjct: 157  FDSLRRRQVKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIERE 216

Query: 3226 QRLQESKRQK--ASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDA 3053
            Q+LQ++K +K  A+YA +I LLPADKMAVIVMHKMMGL+M G ++GC+++VQAA+ +G A
Sbjct: 217  QKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIA 276

Query: 3052 IEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKE---GDIQRKHVEXXXXXXXXXXXXXX 2882
            IEQEVRIHNFL+R++K+      ++ + K + ++     I+RK +               
Sbjct: 277  IEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRVNSLIRRKRI----------IDALK 326

Query: 2881 XKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKE 2702
                E  K WGR  QAKLGS L++LLIETAYVQPP+ Q  D  PE RPAF H  KT+ K 
Sbjct: 327  VVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQSGDSIPEFRPAFRHKFKTVTKY 386

Query: 2701 PGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMR 2522
            PG +  +R G IECDSL+  GL  +A+HM+IPY+PML+ P+ WKGY KGG+LFLPSY+MR
Sbjct: 387  PGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYIMR 446

Query: 2521 THGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDR 2342
            THG+++QQDA+R +  +   +VFEALDTLG TKWRVNR++L  +E LW +GGNIAGLV+R
Sbjct: 447  THGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNR 506

Query: 2341 EDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYP 2162
            EDV IPEKP SED  E+           K N ERH+ RCD+ELKLSVARKMKDE+GFYYP
Sbjct: 507  EDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYP 566

Query: 2161 HNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLS 1982
            HNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLGK+GLHWLKIHLANLYAGG+EKLS
Sbjct: 567  HNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLS 626

Query: 1981 YDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSH 1802
            +D RL FVE H+DD+ DSAE PI GKRWWLKAEDPFQCLAAC+ L++ALKS SP++V SH
Sbjct: 627  HDARLAFVETHLDDVMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISH 686

Query: 1801 LPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPG 1622
            LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++PADVYSEI+ RV  I+KKD  KDP 
Sbjct: 687  LPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPE 746

Query: 1621 SDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQAS 1442
            S+P+A LAKILI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+GVI+D+++LF A+
Sbjct: 747  SNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAA 806

Query: 1441 CYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHL 1262
            CY+A VT+ ALGE+F+AAR+IM WLGDCAK++AS+N PVRW+TPLGLPVVQPY ++ERHL
Sbjct: 807  CYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHL 866

Query: 1261 IRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSF 1082
            IRTSLQVL+LQREG+ VD ++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL+FAGVHDS+
Sbjct: 867  IRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSY 926

Query: 1081 WTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGDFDLKKVLES 902
            WTHACD+D MN+ILREKFVELY+TPILE+LL+SFQ S+P L FP +P RGDFDLK+VL+S
Sbjct: 927  WTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKS 986

Query: 901  PYFFN 887
             YFFN
Sbjct: 987  QYFFN 991


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 597/910 (65%), Positives = 735/910 (80%), Gaps = 7/910 (0%)
 Frame = -1

Query: 3595 SHSPSIQSPTLSDPIREDLELGFQESVKRVFVDDPPWLSSFEANGI--LDDSDEKLGFRE 3422
            S + +I   +L + +   +E       +R+F+ DPPW+S+    G+  + D   K+  ++
Sbjct: 94   SFAGTINGTSLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTVKIERKD 153

Query: 3421 MERKKYNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTE 3242
            ++++K+++LRRRQVK ETEAWEK  +EYR+L +EMCE  LAPNLPYVK +FLGWF+PL +
Sbjct: 154  IDKRKFDSLRRRQVKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKD 213

Query: 3241 AIAEEQRLQESKRQK--ASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAI 3068
             I  EQ+LQ++K +K  A+YA +I LLPADKMAVIVMHKMMGL+M G ++GC+++VQAA+
Sbjct: 214  VIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAV 273

Query: 3067 YVGDAIEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKE---GDIQRKHVEXXXXXXXXX 2897
             +G AIEQEVRIHNFL+R++K+      ++ + K + ++     I+RK +          
Sbjct: 274  SIGIAIEQEVRIHNFLKRTRKNNAGDSEEELKDKQLLRKRVNSLIRRKRI---------- 323

Query: 2896 XXXXXXKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIK 2717
                     E  K WGR  QAKLGS L++LLIETAYVQPP+ Q  D  PE RPAF H  K
Sbjct: 324  IDALKVVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFK 383

Query: 2716 TIMKEPGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFLP 2537
            T+ K PG +  +R G IECDSL+  GL  +A+HM+IPY+PML+ P+ WKGY KGG+LFLP
Sbjct: 384  TVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLP 443

Query: 2536 SYVMRTHGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNIA 2357
            SY+MRTHG+++QQDA+R +  +   +VFEALDTLG TKWRVNR++L  +E LW +GGNIA
Sbjct: 444  SYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIA 503

Query: 2356 GLVDREDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDED 2177
            GLV+REDV IPEKP SED  EI           K N ERH+ RCD+ELKLSVARKMKDE+
Sbjct: 504  GLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEE 563

Query: 2176 GFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGG 1997
            GFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLGK+GL+WLKIHLANLYAGG
Sbjct: 564  GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGG 623

Query: 1996 IEKLSYDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSPH 1817
            +EKLS+D RL FVENH+D+I DSAE PI G+RWWLKAEDPFQCLAAC+ L++ALKS SP+
Sbjct: 624  VEKLSHDGRLAFVENHLDNIMDSAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPY 683

Query: 1816 AVTSHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKDI 1637
            +V SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++PADVYSEI++RV  I+KKD 
Sbjct: 684  SVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISLRVHEIMKKDS 743

Query: 1636 MKDPGSDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQL 1457
             KDP S+P+A LAKILI+QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+GVISD+++
Sbjct: 744  SKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERM 803

Query: 1456 LFQASCYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYHK 1277
            LF A+CYAA VT+ ALGE+F+AAR+IM WLGDCAK++AS+N PVRW+TPLGLPVVQPY +
Sbjct: 804  LFSAACYAAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCR 863

Query: 1276 TERHLIRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 1097
            +ERHLIRTSLQVL+LQREG+ VD ++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL+FAG
Sbjct: 864  SERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAG 923

Query: 1096 VHDSFWTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGDFDLK 917
            VHDS+WTHACD+D MN+ILREKFVELY+TPILE+LL+SFQ S+P L FP +P RGDFDLK
Sbjct: 924  VHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLK 983

Query: 916  KVLESPYFFN 887
            +VL+S YFFN
Sbjct: 984  EVLKSQYFFN 993


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1226 bits (3171), Expect = 0.0
 Identities = 605/965 (62%), Positives = 751/965 (77%), Gaps = 7/965 (0%)
 Frame = -1

Query: 3760 ASMASFSNPPRASIHDKWPRESVSMRKKCFRNRRLVFNSRCEGQFRNLNLRGAVCSHSPS 3581
            +S +S S+    S+H+K    SV             F+      F N +      S++ +
Sbjct: 56   SSSSSSSSSTSLSVHEKPISNSVH------------FHGNLIESFENQD-----SSYAGT 98

Query: 3580 IQSPTLSDPIREDLELGFQESVKRVFVDDPPWLSSFEANGI--LDDSDEKLGFREMERKK 3407
            I+  +L + +   +E       +R+F+ DPPW+S+    G+  + D   K+  ++++++K
Sbjct: 99   IKGASLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRK 158

Query: 3406 YNALRRRQVKMETEAWEKRAEEYRELVREMCENKLAPNLPYVKSLFLGWFEPLTEAIAEE 3227
            +++LRRRQVK ETEAWE+  +EYR+L +EMCE  LAPNLPYVK +FLGWF+PL + I  E
Sbjct: 159  FDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIERE 218

Query: 3226 QRLQESKRQK--ASYAQYIGLLPADKMAVIVMHKMMGLLMVGPDEGCVRLVQAAIYVGDA 3053
            Q+LQ++K +K  A+YA +I LLPADKMAVIVMHKMMGL+M G ++GC+++VQAA+ +G A
Sbjct: 219  QKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIA 278

Query: 3052 IEQEVRIHNFLERSKKSRGWKKIDDDEHKSMSKE---GDIQRKHVEXXXXXXXXXXXXXX 2882
            IEQEVRIHNFL+R++K+      ++ + K + ++     I+RK +               
Sbjct: 279  IEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRVNSLIRRKRI----------IDALK 328

Query: 2881 XKNDEDYKSWGRDAQAKLGSCLIKLLIETAYVQPPVNQLSDCQPEIRPAFSHTIKTIMKE 2702
                E  K WGR  QAKLGS L++LLIE AYVQPP+ Q  D  PE RPAF H  KT+ K 
Sbjct: 329  VVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKY 388

Query: 2701 PGRRGAKRCGFIECDSLVRKGLHSTARHMVIPYMPMLILPRSWKGYGKGGHLFLPSYVMR 2522
            PG +  +R G IECDSL+  GL  +A+HM+IPY+PML+ P+ WKGY KGG+LFLPSY+MR
Sbjct: 389  PGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMR 448

Query: 2521 THGARQQQDAIRTVPRRQMQKVFEALDTLGRTKWRVNRRVLSAIESLWVNGGNIAGLVDR 2342
            THG+++QQDA++ +  +   +VFEALDTLG TKWRVNR +L  +E LW +GGNIAGLV+R
Sbjct: 449  THGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNR 508

Query: 2341 EDVFIPEKPLSEDLLEIXXXXXXXXXXXKCNHERHAQRCDIELKLSVARKMKDEDGFYYP 2162
            EDV IPEKP SED  E+           K N ERH+ RCD+ELKLSVARKMKDE+GFYYP
Sbjct: 509  EDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYP 568

Query: 2161 HNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLGKAGLHWLKIHLANLYAGGIEKLS 1982
            HNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLGK+GLHWLKIHLANLYAGG+EKLS
Sbjct: 569  HNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLS 628

Query: 1981 YDMRLTFVENHVDDIFDSAERPIEGKRWWLKAEDPFQCLAACINLSEALKSSSPHAVTSH 1802
            +D RL FVENH+DDI DSAE PI GKRWWLKAEDPFQCLAAC+ L++ALKS SP++V SH
Sbjct: 629  HDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISH 688

Query: 1801 LPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGDQPADVYSEIAVRVLNILKKDIMKDPG 1622
            LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++PADVYSEI+ RV  I+KKD  KDP 
Sbjct: 689  LPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPE 748

Query: 1621 SDPSAFLAKILIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEERGVISDDQLLFQAS 1442
            S+P+A LAKILI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEE+GVI+D+++LF A+
Sbjct: 749  SNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAA 808

Query: 1441 CYAASVTMTALGEMFQAARSIMGWLGDCAKVMASENQPVRWVTPLGLPVVQPYHKTERHL 1262
            CY+A VT+ ALGE+F+AAR+IM WLGDCAK++AS+N PVRW+TPLGLPVVQPY ++ERHL
Sbjct: 809  CYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHL 868

Query: 1261 IRTSLQVLSLQREGDCVDTKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSF 1082
            IRTSLQVL+LQREG+ VD ++QRTAFPPNFVHSLDG+HMMMTAVACR+AGL+FAGVHDS+
Sbjct: 869  IRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSY 928

Query: 1081 WTHACDIDKMNQILREKFVELYDTPILENLLESFQTSFPTLKFPALPPRGDFDLKKVLES 902
            WTHACD+D MN+ILREKFVELY+TPILE+LL+SFQ S+P L FP +P RGDFDLK+VL+S
Sbjct: 929  WTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKS 988

Query: 901  PYFFN 887
             YFFN
Sbjct: 989  QYFFN 993