BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00000407
         (1377 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007205644.1| hypothetical protein PRUPE_ppa009295mg [Prun...   358   4e-96
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   353   1e-94
ref|XP_006428771.1| hypothetical protein CICLE_v10012331mg [Citr...   346   1e-92
ref|XP_002323470.1| 29 kDa ribonucleoprotein [Populus trichocarp...   344   5e-92
ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor...   334   6e-89
gb|EXC16209.1| 29 kDa ribonucleoprotein B [Morus notabilis]           332   2e-88
ref|XP_006381446.1| 29 kDa ribonucleoprotein [Populus trichocarp...   327   8e-87
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   323   8e-86
ref|XP_006428768.1| hypothetical protein CICLE_v10012331mg [Citr...   323   1e-85
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...   323   1e-85
ref|XP_006846809.1| hypothetical protein AMTR_s00148p00072380 [A...   322   2e-85
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   322   2e-85
ref|XP_006428770.1| hypothetical protein CICLE_v10012331mg [Citr...   322   3e-85
ref|XP_006428767.1| hypothetical protein CICLE_v10012331mg [Citr...   320   7e-85
ref|XP_004958419.1| PREDICTED: ribonucleoprotein At2g37220, chlo...   319   2e-84
ref|XP_006428769.1| hypothetical protein CICLE_v10012331mg [Citr...   319   2e-84
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   318   3e-84
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]    315   2e-83
ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [S...   314   5e-83
ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis th...   314   7e-83

>ref|XP_007205644.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica]
            gi|462401286|gb|EMJ06843.1| hypothetical protein
            PRUPE_ppa009295mg [Prunus persica]
          Length = 298

 Score =  358 bits (918), Expect = 4e-96
 Identities = 183/259 (70%), Positives = 211/259 (81%), Gaps = 6/259 (2%)
 Frame = -2

Query: 1274 ALIFSKPTNVSISSISP------LKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQE 1113
            AL   KPT+V   S+S        KP S ISA+FL   R ++ SSRFVRNVAVSSEF+Q+
Sbjct: 41   ALYTPKPTSVPFYSVSSSSLTLGCKPIS-ISASFLNSGRFQSASSRFVRNVAVSSEFEQD 99

Query: 1112 EDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFG 933
            E+V  ++GE +F+PDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSRGFG
Sbjct: 100  EEVLSDDGEASFAPDLKLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKTTGRSRGFG 159

Query: 932  FVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPRGGASFDASNRVYVG 753
            FVTMS+ +E E AA+Q NGYEL+GR LRVNYGPPPP+ +   RG RGG   D+SNR+YVG
Sbjct: 160  FVTMSSVQEAEGAARQLNGYELDGRALRVNYGPPPPRSEDSFRGARGGGGSDSSNRLYVG 219

Query: 752  NLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVD 573
            NLAWGVD+LALE LF EQGKV+EAKVVYDRDSG+SRGFGFVT+  A+E++SA+ SLDGVD
Sbjct: 220  NLAWGVDNLALENLFSEQGKVLEAKVVYDRDSGRSRGFGFVTYGTADEMNSAMESLDGVD 279

Query: 572  LNGRPIRVTVAESRPRRQF 516
            LNGR IRVT AE RPRRQF
Sbjct: 280  LNGRSIRVTAAEPRPRRQF 298


>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
            vinifera]
          Length = 288

 Score =  353 bits (906), Expect = 1e-94
 Identities = 189/277 (68%), Positives = 217/277 (78%), Gaps = 23/277 (8%)
 Frame = -2

Query: 1277 KALIFSKPTNVSISSISPLKPFSSISAAF------LPPSRRE--AVSSRFVRNVAVSSEF 1122
            K L  SKPT+VS  S+    PFS  S         L PS R    +SSRFVRNVAVSS++
Sbjct: 16   KTLAISKPTSVSFFSL----PFSCSSLKLHSNSISLSPSSRGFLTLSSRFVRNVAVSSDY 71

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            +Q+EDV  +EGE +FSPDLKLFVGNLPF VDSA LAGLFEQAGNVEMVEVIYDK TGRSR
Sbjct: 72   EQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSR 131

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPK---------------EDSPS 807
            GFGFVTMST EEVEAAAQQFNGYELEGR LRVN GPPP +               E++  
Sbjct: 132  GFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNF 191

Query: 806  RGPRGGASFDASNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVT 627
            RGPRGGA+ +++NR+YVGNL+WGVDDLALETLF EQGKV EA+V+YDR++G+SRGFGFVT
Sbjct: 192  RGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVT 251

Query: 626  FSCAEEVDSAISSLDGVDLNGRPIRVTVAESRPRRQF 516
            ++ AEEV+ AI SLDGVDLNGR IRVT+AE+RPRRQF
Sbjct: 252  YNSAEEVNRAIESLDGVDLNGRSIRVTMAEARPRRQF 288


>ref|XP_006428771.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
            gi|568855826|ref|XP_006481497.1| PREDICTED:
            ribonucleoprotein At2g37220, chloroplastic-like [Citrus
            sinensis] gi|557530828|gb|ESR42011.1| hypothetical
            protein CICLE_v10012331mg [Citrus clementina]
          Length = 282

 Score =  346 bits (888), Expect = 1e-92
 Identities = 195/267 (73%), Positives = 215/267 (80%), Gaps = 13/267 (4%)
 Frame = -2

Query: 1277 KALIF--SKPTNVSISSISP-----LKPFSSISAAFLPPSRREAVS-SRFVRNVAVSSEF 1122
            K L F  SKPT+ S+ S S       KP S IS++F+   +    S SRFVRNVAVSSEF
Sbjct: 17   KTLAFYNSKPTSFSLLSSSSSHKLLAKPIS-ISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            DQEED+  +E   NFSPDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSR
Sbjct: 76   DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR 135

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPP-KEDSPSRGPRG---GASFDA 774
            GFGFVTMS+ EEVEAAAQQFNGYELEGRPLRVN GPPPP +E+   RGPRG   GA    
Sbjct: 136  GFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNSGPPPPRREEFSPRGPRGGGAGAPSSG 195

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDDLALETLF EQGKV+EAKVVYDR+SG+SRGFGFVT+S AEEVD+AI
Sbjct: 196  GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 255

Query: 593  SSLDGVDLNGRPIRVTVAESRP-RRQF 516
             SL+GVDL GR IRV+VAE+RP RRQF
Sbjct: 256  DSLNGVDLAGRAIRVSVAEARPQRRQF 282


>ref|XP_002323470.1| 29 kDa ribonucleoprotein [Populus trichocarpa]
            gi|222868100|gb|EEF05231.1| 29 kDa ribonucleoprotein
            [Populus trichocarpa]
          Length = 273

 Score =  344 bits (883), Expect = 5e-92
 Identities = 176/253 (69%), Positives = 213/253 (84%), Gaps = 3/253 (1%)
 Frame = -2

Query: 1265 FSKPTNV---SISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSDE 1095
            +SKP ++   S SS S LKP S + +      +++ +SSRF++NVA+SSEF QEED   +
Sbjct: 24   YSKPNSLFFLSPSSTSSLKPVSLLLSF---QHQQQPLSSRFLKNVAISSEFGQEEDFLSD 80

Query: 1094 EGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMST 915
              E++FS DLKLFVGNLPF VDSA+LAGLFE AGNVEMVEVIYDK TGRSRGFGFVTM+T
Sbjct: 81   GDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTT 140

Query: 914  AEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPRGGASFDASNRVYVGNLAWGV 735
             EEVEAA++QFNGYEL+GR LRVN+GPPP KE S SRGPRGG +FD+ NRVYVGNL+W V
Sbjct: 141  IEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETFDSGNRVYVGNLSWNV 200

Query: 734  DDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVDLNGRPI 555
            D+LALETLF E+G+VM+AKVVYDRDSG+SRGFGFVT+S AEEVD+AI SL+G +L+GR I
Sbjct: 201  DNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAI 260

Query: 554  RVTVAESRPRRQF 516
            RV+VAE++PRRQF
Sbjct: 261  RVSVAEAKPRRQF 273


>ref|XP_004304439.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 277

 Score =  334 bits (856), Expect = 6e-89
 Identities = 187/264 (70%), Positives = 213/264 (80%), Gaps = 11/264 (4%)
 Frame = -2

Query: 1274 ALIFSKPTNVSI---SSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDV 1104
            AL   KPT+VS+   SS S LKP S ISA+FL   +    S  FVR+VAVS +F+Q+E+V
Sbjct: 19   ALYSPKPTSVSLFSLSSFSSLKPIS-ISASFLSSGK---ASRSFVRHVAVS-DFEQDEEV 73

Query: 1103 -SDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFV 927
             S +E E NFSPDLKLFVGNLPF VDSAQLA LFE AGNVEMVEVIYDK TGRSRGFGFV
Sbjct: 74   LSGDEAEPNFSPDLKLFVGNLPFTVDSAQLAELFEGAGNVEMVEVIYDKTTGRSRGFGFV 133

Query: 926  TMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRG-----PRGGASF-DASNR 765
            TMS+A+EVEAAA+QFNGYEL+GR LRVNYGPPPP+ +   RG     PRGG  + D+SNR
Sbjct: 134  TMSSAQEVEAAARQFNGYELDGRALRVNYGPPPPRTEDSFRGARGGSPRGGGGYGDSSNR 193

Query: 764  VYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSL 585
            +YVGNLAWGVD+LALE LF EQGKV+EAKVV+DRDSG+SRGFGFVT+  AEE++SAI SL
Sbjct: 194  LYVGNLAWGVDNLALENLFNEQGKVLEAKVVFDRDSGRSRGFGFVTYGSAEEMNSAIESL 253

Query: 584  DGVDLNGRPIRVTVAESR-PRRQF 516
            DGVDL GR IRVT AE R PRRQF
Sbjct: 254  DGVDLGGRSIRVTAAEPRPPRRQF 277


>gb|EXC16209.1| 29 kDa ribonucleoprotein B [Morus notabilis]
          Length = 296

 Score =  332 bits (852), Expect = 2e-88
 Identities = 183/277 (66%), Positives = 214/277 (77%), Gaps = 24/277 (8%)
 Frame = -2

Query: 1274 ALIFSKPTNVSISSI-SPLKPFSS-------ISAAFLPPSRREAVSS----RFVRNVAVS 1131
            +L  SKPT++S+SS+ SP   F+S       ++   +       +SS    RFV  VAVS
Sbjct: 20   SLFASKPTSLSLSSLYSPSSSFASLKLYAGNVNVVCVSARGFRGLSSSSPCRFVPKVAVS 79

Query: 1130 SEFDQEEDVSDEEGER-NFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFT 954
            SEFDQ+EDV  + GE   FSPDLKLFVGNLPF VDSAQLAGLFE+ GNVEMVEVIYDK T
Sbjct: 80   SEFDQDEDVLSDGGEEPGFSPDLKLFVGNLPFSVDSAQLAGLFERTGNVEMVEVIYDKTT 139

Query: 953  GRSRGFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKE-DSPSRGPR------ 795
            GRSRGFGFVTMS+ +EVEAAAQQFNGYELEGRPLRVNYGPPP +E DS  RG R      
Sbjct: 140  GRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRPLRVNYGPPPSREDDSFPRGRRGGGGGG 199

Query: 794  ----GGASFDASNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVT 627
                GGA ++  NRVYVGNL+WGVD+ ALE+LF EQGKV+EAKVVYDRDSG+SRGFGFVT
Sbjct: 200  GGGGGGAGYETGNRVYVGNLSWGVDNAALESLFSEQGKVLEAKVVYDRDSGRSRGFGFVT 259

Query: 626  FSCAEEVDSAISSLDGVDLNGRPIRVTVAESRPRRQF 516
            ++ A+EV+SAI+SL+GVDLNGR IRVT AE++PRR F
Sbjct: 260  YNTADEVNSAINSLNGVDLNGRSIRVTHAEAKPRRSF 296


>ref|XP_006381446.1| 29 kDa ribonucleoprotein [Populus trichocarpa]
            gi|550336149|gb|ERP59243.1| 29 kDa ribonucleoprotein
            [Populus trichocarpa]
          Length = 286

 Score =  327 bits (838), Expect = 8e-87
 Identities = 172/265 (64%), Positives = 214/265 (80%), Gaps = 15/265 (5%)
 Frame = -2

Query: 1265 FSKPTNVS---ISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSDE 1095
            +SKPT++S   +SS S +KP +S+  +F    +++ +SSRF+++VA+SSEF QEEDV  +
Sbjct: 24   YSKPTSLSFLSLSSTSSIKP-ASLFLSF-QQKQQQPLSSRFLKSVAISSEFGQEEDVFGD 81

Query: 1094 EGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMST 915
              E +FSPDL+LFVGNLPF V+SAQLA LF+ AGNVEMVEV YDK TGRSRGFGFVTMST
Sbjct: 82   GDEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMST 141

Query: 914  AEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSR------------GPRGGASFDAS 771
             EEVEAA+QQFNGYEL+GRPLRVN GPPP +E S SR            G RGG +FD+S
Sbjct: 142  IEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSS 201

Query: 770  NRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAIS 591
            NRVYVGNL+W VDD ALE+LF E+GKVM+AKVVYDRDSG+S+GFGFVT+S AEEV+ A+ 
Sbjct: 202  NRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVD 261

Query: 590  SLDGVDLNGRPIRVTVAESRPRRQF 516
            SL+G +L+GR IRV+VAE++PRR+F
Sbjct: 262  SLNGAELDGRAIRVSVAEAKPRRRF 286


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
            gi|223541388|gb|EEF42939.1| ribonucleoprotein,
            chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  323 bits (829), Expect = 8e-86
 Identities = 171/256 (66%), Positives = 205/256 (80%), Gaps = 7/256 (2%)
 Frame = -2

Query: 1262 SKPTNVSIS-SISPLKPFSSISAAFLPPSRRE-AVSSRFVRNVAVSSEFDQEEDVSDEEG 1089
            +KP ++S      P+   SS+ ++F+P  ++  + SSRFV +VA+SSEF QEEDVS +  
Sbjct: 25   NKPISLSFKLHAKPISIPSSLFSSFVPLQQQPYSSSSRFVPSVAISSEFGQEEDVSSDGD 84

Query: 1088 ERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMSTAE 909
            E +FS DLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSRGFGFVTMS+ +
Sbjct: 85   ESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSID 144

Query: 908  EVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPR-----GGASFDASNRVYVGNLA 744
            EVEAAAQQFNGYELEGR LRVN GPPP +E S SR PR     GG      NR+YVGNL+
Sbjct: 145  EVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLS 204

Query: 743  WGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVDLNG 564
            W VD+LALE+ F EQGKV++AKVVYDR+SG+SRGFGFVT+S AEEV++AI SL+G +L+G
Sbjct: 205  WSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDG 264

Query: 563  RPIRVTVAESRPRRQF 516
            R IRV+VAE+RPRRQF
Sbjct: 265  RAIRVSVAEARPRRQF 280


>ref|XP_006428768.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
            gi|557530825|gb|ESR42008.1| hypothetical protein
            CICLE_v10012331mg [Citrus clementina]
          Length = 271

 Score =  323 bits (828), Expect = 1e-85
 Identities = 187/267 (70%), Positives = 205/267 (76%), Gaps = 13/267 (4%)
 Frame = -2

Query: 1277 KALIF--SKPTNVSISSISP-----LKPFSSISAAFLPPSRREAVS-SRFVRNVAVSSEF 1122
            K L F  SKPT+ S+ S S       KP S IS++F+   +    S SRFVRNVAVSSEF
Sbjct: 17   KTLAFYNSKPTSFSLLSSSSSHKLLAKPIS-ISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            DQEED+  +E   NFSPDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSR
Sbjct: 76   DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR 135

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPP-KEDSPSRGPRG---GASFDA 774
            GFGFVTMS+ EEVEAAAQQFNGYELEGRPLRVN GPPPP +E+   RGPRG   GA    
Sbjct: 136  GFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNSGPPPPRREEFSPRGPRGGGAGAPSSG 195

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDDLALETLF EQGKV+EAKVVYDR+SG+SRGFGFVT+S AEE     
Sbjct: 196  GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEE----- 250

Query: 593  SSLDGVDLNGRPIRVTVAESRP-RRQF 516
                  DL GR IRV+VAE+RP RRQF
Sbjct: 251  ------DLAGRAIRVSVAEARPQRRQF 271


>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
            kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus]
          Length = 278

 Score =  323 bits (827), Expect = 1e-85
 Identities = 176/245 (71%), Positives = 196/245 (80%), Gaps = 4/245 (1%)
 Frame = -2

Query: 1238 SSISPLKPFSSISAAFLPPSR-REAVSSRFVRNVAVSSEFDQEEDVSDEEGE-RNFSPDL 1065
            SSI  L    SIS+  LP  R     SSRFVRNVAVSS++ QEE   + +G+  +++PDL
Sbjct: 34   SSIRLLSNPISISSFLLPSHRVSPPFSSRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDL 93

Query: 1064 KLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMSTAEEVEAAAQQ 885
            KLFVGNLPF VDSAQLAGLFE AG VE VEVIYDK TGRSRGFGFVTMST  EVEAAAQQ
Sbjct: 94   KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQ 153

Query: 884  FNGYELEGRPLRVNYGPPPPK-EDSPSRGPRGGASFDASNRVYVGNLAWGVDDLALETLF 708
            FNGYEL+GR LRVNYGPPPPK +DS  RG R  + FD  NRV+V NLAWGVDDL LE LF
Sbjct: 154  FNGYELDGRLLRVNYGPPPPKRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLF 213

Query: 707  GEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVDLNGRPIRVTVAESR- 531
             E+G V+EAKVVYDRDSGKSRGFGFVT++ AEEV+ AI SLDGVDL+GRPIRVT AE+R 
Sbjct: 214  REKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARP 273

Query: 530  PRRQF 516
            PRRQF
Sbjct: 274  PRRQF 278


>ref|XP_006846809.1| hypothetical protein AMTR_s00148p00072380 [Amborella trichopoda]
            gi|548849631|gb|ERN08390.1| hypothetical protein
            AMTR_s00148p00072380 [Amborella trichopoda]
          Length = 272

 Score =  322 bits (826), Expect = 2e-85
 Identities = 174/259 (67%), Positives = 201/259 (77%), Gaps = 5/259 (1%)
 Frame = -2

Query: 1277 KALIFSKPTNVSISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSD 1098
            K LI +    +++S  +P    +S   A L  S+R  +   F+R+VAV SEF QEED + 
Sbjct: 18   KTLISTGIRKLTLSLFTPTLSLNSKGRASLSLSKRAPL---FIRSVAVFSEFQQEEDEAP 74

Query: 1097 EEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMS 918
             E E NFS DLKLFVGNLPF VDSA+LA LFEQAGNVEMVEVIYDK TGRSRGFGFVTMS
Sbjct: 75   SE-EANFSADLKLFVGNLPFSVDSARLAELFEQAGNVEMVEVIYDKQTGRSRGFGFVTMS 133

Query: 917  TAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPRG-----GASFDASNRVYVG 753
            T EEVEAA QQFNG++ EGR LRVN GPPP +++   RG RG       SFD+ NRVYVG
Sbjct: 134  TVEEVEAAVQQFNGHDFEGRQLRVNSGPPPARDEMSPRGSRGFDSPRPRSFDSPNRVYVG 193

Query: 752  NLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVD 573
            NL+WGVDDLALE LF EQGKVMEAKVVYDR+SG+SRGFGFVT+S AEEV SAIS+L+G D
Sbjct: 194  NLSWGVDDLALENLFSEQGKVMEAKVVYDRESGRSRGFGFVTYSTAEEVTSAISTLNGAD 253

Query: 572  LNGRPIRVTVAESRPRRQF 516
            L+GRPIRVT AE++PRRQF
Sbjct: 254  LDGRPIRVTPAEAKPRRQF 272


>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
            Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
            29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  322 bits (825), Expect = 2e-85
 Identities = 178/256 (69%), Positives = 200/256 (78%), Gaps = 7/256 (2%)
 Frame = -2

Query: 1262 SKPTNVSISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSDE---- 1095
            S+ T++S  S+ P     S+S      S     SSRFVR V +S +FDQ EDV D     
Sbjct: 25   SQTTSLSFFSLPPSSLNLSLS------SSSSCFSSRFVRKVTLS-DFDQIEDVEDGDDGV 77

Query: 1094 EGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMST 915
            E ERNFSPDLK+FVGNLPF  DSA LA LFE+AGNVEMVEVIYDK TGRSRGFGFVTMS+
Sbjct: 78   EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137

Query: 914  AEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPS--RGPRGGASFDASNRVYVGNLAW 741
             EEVEAA QQFNGYEL+GR LRVN GPPP K ++ S   G RGG SFD+SNRVYVGNLAW
Sbjct: 138  KEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW 197

Query: 740  GVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSLDGVDLNGR 561
            GVD  ALETLF EQGKV++AKVVYDRDSG+SRGFGFVT+S AEEV++AI SLDGVDLNGR
Sbjct: 198  GVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 257

Query: 560  PIRVTVAESR-PRRQF 516
             IRV+ AE+R PRRQF
Sbjct: 258  AIRVSPAEARPPRRQF 273


>ref|XP_006428770.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
            gi|557530827|gb|ESR42010.1| hypothetical protein
            CICLE_v10012331mg [Citrus clementina]
          Length = 266

 Score =  322 bits (824), Expect = 3e-85
 Identities = 181/251 (72%), Positives = 199/251 (79%), Gaps = 12/251 (4%)
 Frame = -2

Query: 1277 KALIF--SKPTNVSISSISP-----LKPFSSISAAFLPPSRREAVS-SRFVRNVAVSSEF 1122
            K L F  SKPT+ S+ S S       KP S IS++F+   +    S SRFVRNVAVSSEF
Sbjct: 17   KTLAFYNSKPTSFSLLSSSSSHKLLAKPIS-ISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            DQEED+  +E   NFSPDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSR
Sbjct: 76   DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR 135

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPP-KEDSPSRGPRG---GASFDA 774
            GFGFVTMS+ EEVEAAAQQFNGYELEGRPLRVN GPPPP +E+   RGPRG   GA    
Sbjct: 136  GFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNSGPPPPRREEFSPRGPRGGGAGAPSSG 195

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDDLALETLF EQGKV+EAKVVYDR+SG+SRGFGFVT+S AEEVD+AI
Sbjct: 196  GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 255

Query: 593  SSLDGVDLNGR 561
             SL+GV   GR
Sbjct: 256  DSLNGVVRFGR 266



 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = -2

Query: 791 GASFDASNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAE 612
           G++F    +++VGNL + VD   L  LF   G V   +V+YD+ +G+SRGFGFVT S  E
Sbjct: 87  GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVE 146

Query: 611 EVDSAISSLDGVDLNGRPIRVTVAESRPRRQ 519
           EV++A    +G +L GRP+RV      PRR+
Sbjct: 147 EVEAAAQQFNGYELEGRPLRVNSGPPPPRRE 177


>ref|XP_006428767.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
            gi|557530824|gb|ESR42007.1| hypothetical protein
            CICLE_v10012331mg [Citrus clementina]
          Length = 297

 Score =  320 bits (821), Expect = 7e-85
 Identities = 179/246 (72%), Positives = 197/246 (80%), Gaps = 12/246 (4%)
 Frame = -2

Query: 1277 KALIF--SKPTNVSISSISP-----LKPFSSISAAFLPPSRREAVS-SRFVRNVAVSSEF 1122
            K L F  SKPT+ S+ S S       KP S IS++F+   +    S SRFVRNVAVSSEF
Sbjct: 17   KTLAFYNSKPTSFSLLSSSSSHKLLAKPIS-ISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            DQEED+  +E   NFSPDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSR
Sbjct: 76   DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR 135

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPP-KEDSPSRGPRG---GASFDA 774
            GFGFVTMS+ EEVEAAAQQFNGYELEGRPLRVN GPPPP +E+   RGPRG   GA    
Sbjct: 136  GFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNSGPPPPRREEFSPRGPRGGGAGAPSSG 195

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDDLALETLF EQGKV+EAKVVYDR+SG+SRGFGFVT+S AEEVD+AI
Sbjct: 196  GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 255

Query: 593  SSLDGV 576
             SL+GV
Sbjct: 256  DSLNGV 261



 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = -2

Query: 791 GASFDASNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAE 612
           G++F    +++VGNL + VD   L  LF   G V   +V+YD+ +G+SRGFGFVT S  E
Sbjct: 87  GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVE 146

Query: 611 EVDSAISSLDGVDLNGRPIRVTVAESRPRRQ 519
           EV++A    +G +L GRP+RV      PRR+
Sbjct: 147 EVEAAAQQFNGYELEGRPLRVNSGPPPPRRE 177


>ref|XP_004958419.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like [Setaria
            italica]
          Length = 265

 Score =  319 bits (818), Expect = 2e-84
 Identities = 164/263 (62%), Positives = 202/263 (76%), Gaps = 10/263 (3%)
 Frame = -2

Query: 1274 ALIFSKPTNVSISSISPLKPFSSISAAFLP---PSRREAVSSRFVRN---VAVSSEFDQE 1113
            A +FS   +    ++S  KP +++++AFLP   P R  +   R V     VAVSSE++ E
Sbjct: 3    AALFSTSLSPRFLALSSPKPAATVASAFLPFRLPLRAVSAPGRRVFEPVAVAVSSEYETE 62

Query: 1112 EDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFG 933
                +EEG   FS DLKLFVGNLPF VDSAQLAGLFEQAG+VEMVEV+YD+ TGRSRGFG
Sbjct: 63   GAEQEEEGAEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFG 122

Query: 932  FVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPRGGAS----FDASNR 765
            FVTMS+AEE  AA +QFNGY  +GRPLRVN GPPPP++DS  R PRGG       D+ N+
Sbjct: 123  FVTMSSAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDSAPRAPRGGGGGGNFVDSGNK 182

Query: 764  VYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAISSL 585
            VYVGNL+WGVD+  LE LF EQG+V++AKV+YDR+SG+SRGFGFVT+  AEEV++AIS+L
Sbjct: 183  VYVGNLSWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNL 242

Query: 584  DGVDLNGRPIRVTVAESRPRRQF 516
            DG+DL+GR IRVTVAES+PRRQF
Sbjct: 243  DGIDLDGRQIRVTVAESKPRRQF 265


>ref|XP_006428769.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
            gi|557530826|gb|ESR42009.1| hypothetical protein
            CICLE_v10012331mg [Citrus clementina]
          Length = 263

 Score =  319 bits (817), Expect = 2e-84
 Identities = 178/245 (72%), Positives = 196/245 (80%), Gaps = 12/245 (4%)
 Frame = -2

Query: 1277 KALIF--SKPTNVSISSISP-----LKPFSSISAAFLPPSRREAVS-SRFVRNVAVSSEF 1122
            K L F  SKPT+ S+ S S       KP S IS++F+   +    S SRFVRNVAVSSEF
Sbjct: 17   KTLAFYNSKPTSFSLLSSSSSHKLLAKPIS-ISSSFIHSFQPLPSSPSRFVRNVAVSSEF 75

Query: 1121 DQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSR 942
            DQEED+  +E   NFSPDLKLFVGNLPF VDSAQLAGLFE AGNVEMVEVIYDK TGRSR
Sbjct: 76   DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSR 135

Query: 941  GFGFVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPP-KEDSPSRGPRG---GASFDA 774
            GFGFVTMS+ EEVEAAAQQFNGYELEGRPLRVN GPPPP +E+   RGPRG   GA    
Sbjct: 136  GFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNSGPPPPRREEFSPRGPRGGGAGAPSSG 195

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDDLALETLF EQGKV+EAKVVYDR+SG+SRGFGFVT+S AEEVD+AI
Sbjct: 196  GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 255

Query: 593  SSLDG 579
             SL+G
Sbjct: 256  DSLNG 260



 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = -2

Query: 791 GASFDASNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAE 612
           G++F    +++VGNL + VD   L  LF   G V   +V+YD+ +G+SRGFGFVT S  E
Sbjct: 87  GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVE 146

Query: 611 EVDSAISSLDGVDLNGRPIRVTVAESRPRRQ 519
           EV++A    +G +L GRP+RV      PRR+
Sbjct: 147 EVEAAAQQFNGYELEGRPLRVNSGPPPPRRE 177



 Score = 70.9 bits (172), Expect = 1e-09
 Identities = 42/105 (40%), Positives = 55/105 (52%)
 Frame = -2

Query: 1187 PPSRREAVSSRFVRNVAVSSEFDQEEDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGL 1008
            PP RRE  S R  R     +                 S   +++VGNL +GVD   L  L
Sbjct: 172  PPPRREEFSPRGPRGGGAGAPS---------------SGGNRVYVGNLSWGVDDLALETL 216

Query: 1007 FEQAGNVEMVEVIYDKFTGRSRGFGFVTMSTAEEVEAAAQQFNGY 873
            F + G V   +V+YD+ +GRSRGFGFVT S+AEEV+ A    NG+
Sbjct: 217  FREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGF 261


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
            Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
            RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  318 bits (816), Expect = 3e-84
 Identities = 179/267 (67%), Positives = 204/267 (76%), Gaps = 13/267 (4%)
 Frame = -2

Query: 1277 KALIFSKPTNVSISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSD 1098
            + L+  KPT+ + S      P SS++ +   PS     SSRFVR V +  +FDQ EDV D
Sbjct: 16   QTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPS--SCFSSRFVRKVTLP-DFDQIEDVED 72

Query: 1097 -EEG---ERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGF 930
             +EG   ERNFSPDLK+FVGNL F  DSA LA LFE+AGNVEMVEVIYDK TGRSRGFGF
Sbjct: 73   GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132

Query: 929  VTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPS--------RGPRGGASFDA 774
            VTMS+ EEVEAA QQFNGYEL+GR LRVN GPPP K ++ S         G RGG SFD+
Sbjct: 133  VTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDS 192

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
            SNRVYVGNLAWGVD  ALETLF EQGKV++AKVVYDRDSG+SRGFGFVT+S AEEV++AI
Sbjct: 193  SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 252

Query: 593  SSLDGVDLNGRPIRVTVAESR-PRRQF 516
             SLDGVDLNGR IRV+ AE+R PRRQF
Sbjct: 253  ESLDGVDLNGRAIRVSPAEARPPRRQF 279


>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 289

 Score =  315 bits (808), Expect = 2e-83
 Identities = 170/267 (63%), Positives = 205/267 (76%), Gaps = 18/267 (6%)
 Frame = -2

Query: 1262 SKPTNVSISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSDEEG-- 1089
            S+P +VS+ S S     +S S +F   ++  + +SRFVRNVA++SEF+ EED   +    
Sbjct: 23   SRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFVRNVAITSEFEVEEDGFADVAPP 82

Query: 1088 -ERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMSTA 912
             E++FS DLKLFVGNLPF VDSAQLA LFE AGNVEMVEVIYDK TGRSRGFGFVTMS+ 
Sbjct: 83   KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 911  EEVEAAAQQFNGYELEGRPLRVNYGPPPPK-EDSPSRGPR-------------GGASFDA 774
             EVEAAAQQFNGYEL+GRPLRVN GPPPPK ED  SRGPR             GG+   +
Sbjct: 143  SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDD+ALE+LF EQGKV+EA+V+YDRDSG+S+GFGFVT+  ++EV +AI
Sbjct: 203  GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262

Query: 593  SSLDGVDLNGRPIRVTVAESR-PRRQF 516
             SLDG DL+GR IRV+ AE+R PRRQ+
Sbjct: 263  KSLDGADLDGRQIRVSEAEARPPRRQY 289


>ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
            gi|241924453|gb|EER97597.1| hypothetical protein
            SORBIDRAFT_02g040260 [Sorghum bicolor]
          Length = 268

 Score =  314 bits (805), Expect = 5e-83
 Identities = 163/266 (61%), Positives = 200/266 (75%), Gaps = 13/266 (4%)
 Frame = -2

Query: 1274 ALIFSKPTNVSISSISPLKPFSSISAAFLP---PSRREAVSSRFVRN---VAVSSEFDQE 1113
            A +FS   +    ++S  KP +  ++AFLP   P R  +   R V     VAVSSE++ E
Sbjct: 3    AALFSTSLSPRFLALSSAKPAAPAASAFLPFRLPLRAVSAPGRRVFEPVAVAVSSEYETE 62

Query: 1112 EDVSDEEGERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFG 933
                +EEG   FS DLKLFVGNLPF VDSAQLAGLFEQAG+VEMVEV+YD+ TGRSRGFG
Sbjct: 63   GAEQEEEGAEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFG 122

Query: 932  FVTMSTAEEVEAAAQQFNGYELEGRPLRVNYGPPPPKEDSPSRGPRGGAS-------FDA 774
            FVTMS+AEE  AA +QFNGY  +GRPLRVN GPPPP+++S  R PRGG          D+
Sbjct: 123  FVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDS 182

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
            +N+VYVGNLAWGVD+  LE LF EQG+V++AKV+YDR+SG+SRGFGFVT+  A EV++AI
Sbjct: 183  ANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAI 242

Query: 593  SSLDGVDLNGRPIRVTVAESRPRRQF 516
            S+LDG+DL+GR IRVTVAES+PRRQF
Sbjct: 243  SNLDGIDLDGRQIRVTVAESKPRRQF 268


>ref|NP_181259.1| chloroplast RNA binding protein [Arabidopsis thaliana]
            gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName:
            Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
            Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative
            RNA-binding protein [Arabidopsis thaliana]
            gi|4056477|gb|AAC98043.1| putative RNA-binding protein
            [Arabidopsis thaliana] gi|15081717|gb|AAK82513.1|
            At2g37220/F3G5.1 [Arabidopsis thaliana]
            gi|16323482|gb|AAL15235.1| putative RNA-binding protein
            [Arabidopsis thaliana] gi|20197716|gb|AAM15222.1|
            putative RNA-binding protein [Arabidopsis thaliana]
            gi|330254275|gb|AEC09369.1| chloroplast RNA binding
            protein [Arabidopsis thaliana]
          Length = 289

 Score =  314 bits (804), Expect = 7e-83
 Identities = 169/267 (63%), Positives = 204/267 (76%), Gaps = 18/267 (6%)
 Frame = -2

Query: 1262 SKPTNVSISSISPLKPFSSISAAFLPPSRREAVSSRFVRNVAVSSEFDQEEDVSDEEG-- 1089
            S+P +VS+ S S     +S S +F   ++  + +SRF RNVA++SEF+ EED   +    
Sbjct: 23   SRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPP 82

Query: 1088 -ERNFSPDLKLFVGNLPFGVDSAQLAGLFEQAGNVEMVEVIYDKFTGRSRGFGFVTMSTA 912
             E++FS DLKLFVGNLPF VDSAQLA LFE AGNVEMVEVIYDK TGRSRGFGFVTMS+ 
Sbjct: 83   KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 911  EEVEAAAQQFNGYELEGRPLRVNYGPPPPK-EDSPSRGPR-------------GGASFDA 774
             EVEAAAQQFNGYEL+GRPLRVN GPPPPK ED  SRGPR             GG+   +
Sbjct: 143  SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202

Query: 773  SNRVYVGNLAWGVDDLALETLFGEQGKVMEAKVVYDRDSGKSRGFGFVTFSCAEEVDSAI 594
             NRVYVGNL+WGVDD+ALE+LF EQGKV+EA+V+YDRDSG+S+GFGFVT+  ++EV +AI
Sbjct: 203  GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262

Query: 593  SSLDGVDLNGRPIRVTVAESR-PRRQF 516
             SLDG DL+GR IRV+ AE+R PRRQ+
Sbjct: 263  KSLDGADLDGRQIRVSEAEARPPRRQY 289