BLASTX nr result
ID: Cocculus23_contig00000149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00000149
(6161 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2954 0.0
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 2868 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2867 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2867 0.0
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 2855 0.0
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 2850 0.0
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 2842 0.0
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 2840 0.0
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 2839 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2837 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 2835 0.0
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 2829 0.0
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su... 2825 0.0
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 2823 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2954 bits (7657), Expect = 0.0
Identities = 1458/1536 (94%), Positives = 1506/1536 (98%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQAQ+I+NPK+RLKK+LDACKNK+KCEGGDEIE Q DS+EP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+K +KKNDD EQLPEPVERKQQLSAERVL++LKRISDEDCI LGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+RTSAWHSE+ETGFITPGDT VRIE+GELL+GTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAA ERQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK EFD+VF+YE DDE+WNPS+MLPEHVEDLK+I E RNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD +SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P+V+KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDE+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQ AIELQLPSYME GLDFG+TPSRSP+TGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 2868 bits (7436), Expect = 0.0
Identities = 1423/1539 (92%), Positives = 1490/1539 (96%), Gaps = 3/1539 (0%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MDMRFP+SPAEVAKVR+VQFGILSP+EIR MSVV+I+HSET ERGKPKP GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCS+ILADEED +
Sbjct: 61 DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEI-EVQGQDSEEPIKKTR-GGCGAQQPKI 1617
FKQA +I+NPK RLKKVLD CKNKTKCEGGD+I E Q QDSEE +KK R GGCGAQQPKI
Sbjct: 121 FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180
Query: 1618 TIDGMKMVAEFKALKKKNDDQEQ-LPEPVERKQQLSAERVLSILKRISDEDCIALGLNPK 1794
TI+GMKMVAE+K +KKND+QEQ LPEPVERKQQL+AE+VL++LKRI+DEDC LGLNPK
Sbjct: 181 TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240
Query: 1795 YARPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 1974
YARPDWMILQV+ SVMMDTSSRSEDDLTHQLAM+IRHNENL+RQE+NGAPAH
Sbjct: 241 YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300
Query: 1975 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 2154
IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360
Query: 2155 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 2334
SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420
Query: 2335 IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 2514
IIREDGQRLDLRYLKKS DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421 IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480
Query: 2515 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 2694
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540
Query: 2695 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 2874
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600
Query: 2875 QINLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGP 3054
QINL+R SAWHSE+E+GFITPGDT VRIERGELLSGTLCK+TLGTS+GSLIHVIWEEVGP
Sbjct: 601 QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660
Query: 3055 DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHE 3234
DAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETISKAKNEVKELI+AA E
Sbjct: 661 DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720
Query: 3235 RQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 3414
+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780
Query: 3415 QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMG 3594
QMTACVGQQNVEGKRIP+GF DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781 QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840
Query: 3595 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 3774
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900
Query: 3775 SQKLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEAD 3954
SQKLDSLKMK++EF+ V++YE D E+W+PS+MLPEHVEDLK+I E +NVF+AEVQKLEAD
Sbjct: 901 SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960
Query: 3955 RYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK 4134
R+QLGTEI TTGDNSWPMPVNLKRLIWNAQK FKVDLRRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961 RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020
Query: 4135 VVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLV 4314
VVPGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIE+RFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080
Query: 4315 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 4494
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140
Query: 4495 YLKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 4674
YLK EVNKTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200
Query: 4675 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRI 4854
EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260
Query: 4855 RIMNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEG 5034
RIMNDEAPKGE QDES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+NKFDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320
Query: 5035 FKPEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 5214
FKPEIEWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVI+VLGIEAVRRALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380
Query: 5215 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 5394
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440
Query: 5395 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPV 5574
+D+LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQQAIELQLPSYME G+DFG+TPSRSP+
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPM 1499
Query: 5575 TGTPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
TGTPYHEGMMSP YLLSPN RSSPI+DAQFSPYVGGMAF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2867 bits (7431), Expect = 0.0
Identities = 1417/1536 (92%), Positives = 1478/1536 (96%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RIKNPK+RL+K+LDACKNKTKCEGGDEI+VQGQDS++P+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM AE+KA +KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ A ER L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK EF+++FRYEF+DE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2867 bits (7431), Expect = 0.0
Identities = 1417/1536 (92%), Positives = 1478/1536 (96%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RIKNPK+RL+K+LDACKNKTKCEGGDEI+VQGQDS++P+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM AE+KA +KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ A ER L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK EF+++FRYEF+DE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 2855 bits (7401), Expect = 0.0
Identities = 1407/1537 (91%), Positives = 1481/1537 (96%), Gaps = 1/1537 (0%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSVVQIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQ-DSEEPIKKTRGGCGAQQPKIT 1620
FKQA +I+NPK+RLK++ DACK+K C GGD+++VQ Q D++EP+K+ RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179
Query: 1621 IDGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYA 1800
+DGMKMVAEFKA KKKNDDQEQLPEPVERKQ LSAERVL++LKRISDEDC+ LGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 1801 RPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 1980
RPDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 1981 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 2160
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 2161 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 2340
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 2341 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 2520
REDGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 2521 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 2700
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 2701 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 2880
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599
Query: 2881 NLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDA 3060
NL+R SAWHSEAETGFITPGDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 3061 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQ 3240
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKNEVKELI+ AH++
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719
Query: 3241 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 3420
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 3421 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGR 3600
TACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 3601 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 3780
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 3781 KLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 3960
KLDSLKMKK EFD VFRYE DDE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADR+
Sbjct: 900 KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959
Query: 3961 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 4140
QLGTEIATTGDN+WPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 4141 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 4320
PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 4321 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 4500
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 4501 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 4680
KPEVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 4681 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 4860
V P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF+DDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 4861 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 5040
NDEAPKGE QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKF++N+GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319
Query: 5041 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 5220
P+ EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379
Query: 5221 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 5400
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAESD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 5401 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 5580
YLRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+E GLDFG+TP+RSP++G
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498
Query: 5581 TPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
TPYHEGMMSPSYLLSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 2850 bits (7388), Expect = 0.0
Identities = 1410/1536 (91%), Positives = 1471/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RIK+PK+RLKK+LDACKNKTKC+GGDEI+VQGQ+SEEP+KK+RGGCGAQQPK++I
Sbjct: 121 FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM AE+KA +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDED LGLNPKYAR
Sbjct: 181 EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RTSAWHSEAE+G ITPGDT VRIE+GELL+GTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVK+LI A +QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK F YE DDE+WNP +ML EHVEDLK+I E RNVF+AEVQKLE DR Q
Sbjct: 901 LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIA TGDNSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD LS+EAQKNATLFF+ILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEEV
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
N EAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFD NEGFK
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYM+ GLDFG+TPSRSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 2842 bits (7368), Expect = 0.0
Identities = 1403/1536 (91%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FK A RIKNPK+RLKK+LDACKNKTKCEGGDEI+VQ D++EP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQ--DTDEPLKKSRGGCGAQQPKLTI 178
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
DGMKMVAE+KA +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGLNPKYAR
Sbjct: 179 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 239 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 359 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 479 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 539 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 599 LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 658
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVKELI A + L
Sbjct: 659 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSL 718
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 719 EPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 778
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 779 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 838
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 839 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 898
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK EFDK F Y FDDE+WNP +MLPEHVEDLK+I E RNVF+AEV KLE DR Q
Sbjct: 899 LDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQ 958
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIA TGDNSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERL+VVP
Sbjct: 959 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVP 1018
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD LS+EAQKNATLFFNILLRSTFASKRVL+EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1019 GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG 1078
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1079 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1138
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEED+DFV+SYYEMPDEEV
Sbjct: 1139 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEV 1198
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+ DLTCIFNDDNAEKLILRIRIM
Sbjct: 1199 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIM 1258
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
N+E PKG+SQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFD+NEGFK
Sbjct: 1259 NEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA 1318
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1319 EQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1378
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AE+D+
Sbjct: 1379 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDH 1438
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSPV+GT
Sbjct: 1439 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSGT 1497
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
P+ +GMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1498 PFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 2840 bits (7361), Expect = 0.0
Identities = 1403/1539 (91%), Positives = 1478/1539 (96%), Gaps = 3/1539 (0%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +IKNPK RLKK+LDACKNKTKCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+K +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGL+PKYAR
Sbjct: 181 EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQER+GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP I+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+RT+AWH ++E G ITPGDT+VRIE+GELLSGTLCK+TLGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETIS AKNEVK+LIR A ++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK+EFD+VFRYEFDDE WNP++M+ +HVEDL++I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLR--RPSDMHPMEIVEAVDKLQERLKV 4137
LGTEIATTGDN+WPMPVNLKRLIWNAQKTFK+D R R SD+HPME VEAVDKLQERLKV
Sbjct: 961 LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020
Query: 4138 VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVA 4317
VPGDD LS+EAQKNATLFF ILLRST ASKRVL+EYRL+REAFDWVIGEIE+RFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080
Query: 4318 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 4497
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140
Query: 4498 LKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDE 4677
LKPE NKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200
Query: 4678 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIR 4857
EVAPEKISPWLLRIELNREMM+DKKL+MADIAEKIN EF+DDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260
Query: 4858 IMNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGF 5037
IMNDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV+ FDE+EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320
Query: 5038 KPEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 5217
K EWMLDTEGVNLLAVMC+E+VDAR+TTSNHLIEVIEV+GIEAVRR+LLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380
Query: 5218 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAES 5397
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440
Query: 5398 DYLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVT 5577
DYLRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYME GLDFG+TP+RSPV+
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYME-GLDFGMTPARSPVS 1499
Query: 5578 GTPYHEGMMSPSYLLSPNARSSPISD-AQFSPYVGGMAF 5691
GTPYH+GMMSP L+SPN R SP D FSPYVGGMAF
Sbjct: 1500 GTPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 2839 bits (7360), Expect = 0.0
Identities = 1400/1537 (91%), Positives = 1473/1537 (95%), Gaps = 1/1537 (0%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEE+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +IKNPK+RLKK+LDACKNK+KCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPK++I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
DGMKM+AE+K +K+NDDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGLNPK+AR
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTH LAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+R SAWHSE ETGFITPGDT VRIE+GELLSGTLCK+ LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAK EVK LI A + L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNP-SFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 3960
LDSLKMKKSEFD+VFRY DDE WNP S+MLPEH+EDL++I E+R+VFEAEVQKL+ADRY
Sbjct: 901 LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960
Query: 3961 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 4140
QLGTEIA TGD++WP+PVNLKRLIWNAQKTFKVD RR SD+HP+EIV++VDKLQERLKVV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 4141 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 4320
PG D LS+EAQKNATLFF+ILLRST ASKRVL+EYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 4321 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 4500
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 4501 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 4680
PE +KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP STIIEED+DFVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200
Query: 4681 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 4860
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 4861 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 5040
MNDE PKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K +KFDE +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 5041 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 5220
EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 5221 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 5400
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 5401 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 5580
YLRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+G
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1499
Query: 5581 TPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
TPYHEGMMSPSYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 TPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2837 bits (7355), Expect = 0.0
Identities = 1395/1536 (90%), Positives = 1476/1536 (96%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +IKNPK+RLKK+LDACKNKTKCEGGD+I+V QD++EP+KK+RGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISD+DC LG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+RT+AWHS++E G ITPGDT+VRIE+GELLSGT+CK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKN VKELIR A ++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFD+VF+YE DDE+WNP++M +H++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIATTGD+SWP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD LS+EAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE+
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
+PEKISPWLLRIELNREMMVDKKL+MADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KV+KFDENEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
EWMLDTEGVNLLAVMC+E+VDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDC+LYLND ML+ AIELQLPSYM+ GLDFG+TP+RSPV+ T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMD-GLDFGMTPARSPVSVT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSPSYLLSP+ R SP +DAQFSPYV GM F
Sbjct: 1500 PYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 2835 bits (7349), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 2835 bits (7349), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 2835 bits (7349), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 2835 bits (7349), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 2835 bits (7349), Expect = 0.0
Identities = 1397/1536 (90%), Positives = 1474/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RI+NPK+RLKK+LDACKNK+KCEGGDEI++ GQD++EP+KK+RGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+R S+WHSE+E G ITPGDT+VRIE+GELL+GTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR A E++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK+EFD+VFRYEFDDE+W P++ML E VEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIATTGD+S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV KFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+ GLDFG+TP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYHEG+MSPSYLLSPN R SP SDAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 2835 bits (7348), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 2832 bits (7341), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1472/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RI+NPK+RL+K+LDACKNKTKCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
DGMKMVAE+K KKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC+ LGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQ L SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+R SAWH+++E G+ITPGDT VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMEKINETIS AK +VKELI+AA E+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLK KK FD ++ YE DD +WNPS+MLPE VEDLK I EIR+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIA TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD+LSMEAQKNATLFFNILLRS ASKRVLKEYRL+REAF+WV+GEIE+RFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV KFD+NEGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYMEGGL+FG+TP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 2829 bits (7334), Expect = 0.0
Identities = 1390/1536 (90%), Positives = 1471/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RI+NPK+RL+K+LDACKNKTKCEGGDEI+VQG D+EEP+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
DGMKMVAE+K KKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC+ LGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQ L SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+R SAWH+++E G+ITPGDT VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMEKINETIS AK +VKELI+AA E+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLK KK FD ++ YE DD +WNPS+MLPE VEDLK I EIR+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
LGTEIA TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
GDD+LSMEAQKNATLFFNILLRS ASKRVLKEYRL+REAF+WV+GEIE+RFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
P+KISPWLLRIELNREMMVDKKLSMADIAEKIN+EF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV KFD+NEGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYMEGGL+FG+TP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
X2 [Setaria italica]
Length = 1852
Score = 2825 bits (7322), Expect = 0.0
Identities = 1392/1538 (90%), Positives = 1471/1538 (95%), Gaps = 2/1538 (0%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSV+QIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQ-DSEEPIKKTRGGCGAQQPKIT 1620
FKQA +I+NPK+RLK++ DACK+K C GGD+++VQ Q D++EP+KK RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179
Query: 1621 IDGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYA 1800
+DGMKMVAEFKA KKK DDQ+QLPEPVERKQ LSAERVL++LKRISDEDC+ LGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 1801 RPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 1980
RPDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 1981 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 2160
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 2161 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 2340
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 2341 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 2520
REDGQRLDLRY+KKSSD HL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 2521 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 2700
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 2701 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 2880
TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599
Query: 2881 NLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDA 3060
NL+R SAWHSE ETGFITPGDT+VRIE+GELLSGTLCK++LGT +GSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659
Query: 3061 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQ 3240
ARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETISKAKNEVKELI+ AHE
Sbjct: 660 ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHENH 719
Query: 3241 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 3420
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 3421 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGR 3600
TACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 3601 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 3780
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 3781 KLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 3960
KLDSLKMKK EFD VFRYE DDE+W P++MLPEHV+DLK+I E RNVFEAEVQKLEADR+
Sbjct: 900 KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959
Query: 3961 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 4140
QLGTEI TTGDNSWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 4141 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 4320
PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 4321 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 4500
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 4501 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 4680
KPEVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 4681 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 4860
+ P+KISPWLLRIELNREMM+DKKLSMADIAEKIN EF+DDL+CIFNDDNA+KLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259
Query: 4861 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 5040
ND+APKGE QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFD++EGFK
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319
Query: 5041 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 5220
+ EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379
Query: 5221 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 5400
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439
Query: 5401 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 5580
LRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+E GLDFG+TP+RSP++G
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498
Query: 5581 TPYHEGMMSPSYLLSPNARSSPI-SDAQFSPYVGGMAF 5691
TPYHEGMMSPSYLLSPN R+SPI +DA FSPYVG MAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 2823 bits (7317), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1470/1536 (95%)
Frame = +1
Query: 1084 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 1263
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 1264 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 1443
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 1444 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 1623
FKQA RI+NPK+RLKK+LDACKNK+KCEGGDEI++ GQD+EE +KK+RGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 1624 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 1803
+GMKM+AE+KA +KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 1804 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 1983
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1984 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 2163
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 2164 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 2343
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 2344 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 2523
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 2524 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 2703
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 2704 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 2883
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2884 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3063
L+R S+WHSE+E G ITPGDT+VRIE+GELL+GTLCK+TLGT +G LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 3064 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3243
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR AHE++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 3244 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3423
EAEPGR+MM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3424 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3603
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3604 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 3783
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900
Query: 3784 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 3963
LDSLKMKK+EFD+VFRYEFDDE+W P++ML E VEDLK+I E RNVFEAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960
Query: 3964 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 4143
L TEIATTGD+S +PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 4144 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 4323
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 4324 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 4503
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 4504 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 4683
P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 4684 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 4863
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4864 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 5043
NDEAPKGE QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV KFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 5044 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 5223
EWMLDTEGVNLLAVMCHEDVD RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 5224 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 5403
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 5404 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 5583
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+ GLDFG+TP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 5584 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 5691
PYHEG+MSPSYLLSPN R SP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535