BLASTX nr result
ID: Cocculus22_contig00032061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00032061
(301 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-... 61 2e-07
gb|ADB85273.1| putative retrotransposon protein [Phyllostachys e... 60 2e-07
ref|XP_002447569.1| hypothetical protein SORBIDRAFT_06g004065 [S... 60 2e-07
gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notab... 60 3e-07
gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group... 60 3e-07
gb|ABA98063.1| retrotransposon protein, putative, Ty3-gypsy subc... 60 3e-07
ref|XP_002268669.2| PREDICTED: uncharacterized protein LOC100256... 60 3e-07
emb|CAN62233.1| hypothetical protein VITISV_010121 [Vitis vinifera] 60 4e-07
gb|ABA97341.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 5e-07
emb|CAE04203.2| OSJNBa0011E07.12 [Oryza sativa Japonica Group] 59 5e-07
emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group] 59 5e-07
gb|AAK13123.1|AC080019_15 Similar to Transposon MAGGYgagandpolge... 59 7e-07
gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japoni... 59 7e-07
gb|ABA97301.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA98841.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA98580.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA98118.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
>gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550597|gb|ABA93394.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1214
Score = 60.8 bits (146), Expect = 2e-07
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +2
Query: 182 DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
++I MDF+ LPR G D +WVIVDR+TNVAHF+P+K+T
Sbjct: 943 EEIGMDFITGLPRTSSGHDSIWVIVDRLTNVAHFIPVKTT 982
>gb|ADB85273.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 897
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++E+ D C R + P+G L L I G K ++I MDF+ LPR Q G D +W
Sbjct: 499 IAEFVAHCDVCQRVKAEHQRPAGLLQPLSIPGWKW---EQIDMDFITGLPRTQSGYDSIW 555
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 556 VIVDRLTKVAHFIPVKTT 573
>ref|XP_002447569.1| hypothetical protein SORBIDRAFT_06g004065 [Sorghum bicolor]
gi|241938752|gb|EES11897.1| hypothetical protein
SORBIDRAFT_06g004065 [Sorghum bicolor]
Length = 272
Score = 60.5 bits (145), Expect = 2e-07
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +2
Query: 182 DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
+++ MDF+ LPR Q+G D +WVIVDR+T VAHFLP+K+T
Sbjct: 17 EEVGMDFIVGLPRTQRGYDSIWVIVDRLTKVAHFLPVKTT 56
>gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notabilis]
Length = 1088
Score = 60.1 bits (144), Expect = 3e-07
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +2
Query: 5 DRMISVELILMPVNDYDVILGMDWLSEYQTQIDCFRKRVTLTLPSGELL 151
D +S +L ++P+ +DVILGMDWLS+Y +DC+R+RVTL +G+++
Sbjct: 307 DHRLSADLFVLPMAGFDVILGMDWLSKYHATVDCYRRRVTLLTKNGQVI 355
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +2
Query: 134 PSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKS 298
PSGEL L I K D + MDFV LPR Q+G D VWV+VDR+T AHF+PI++
Sbjct: 878 PSGELQPLPIPDWKW---DHVTMDFVTGLPRTQEGYDAVWVVVDRLTKTAHFIPIRA 931
>gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710558|gb|ABF98353.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1770
Score = 60.1 bits (144), Expect = 3e-07
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Frame = +2
Query: 53 DVILGMDWLS------EYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFV 205
D+ G W S EY D C R + P+G L L+I K ++I MDF+
Sbjct: 1345 DLTEGFSWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFI 1401
Query: 206 GALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
LPR G D +WVIVDR+T VAHF+P+K+T
Sbjct: 1402 TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTT 1433
>gb|ABA98063.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 60.1 bits (144), Expect = 3e-07
Identities = 24/40 (60%), Positives = 34/40 (85%)
Frame = +2
Query: 182 DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
D IAMDF+ LPRN +G+D +WV+VDR++ VAHF+PI++T
Sbjct: 707 DDIAMDFMVGLPRNPRGKDAIWVVVDRLSKVAHFIPIRTT 746
>ref|XP_002268669.2| PREDICTED: uncharacterized protein LOC100256661 [Vitis vinifera]
Length = 1855
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 8 RMISVELILMPVNDYDVILGMDWLSEYQTQIDCFRKRVTLTLPSGELLRIHGE 166
R + V+LIL+ + D+DVILGMDWL+ Y +DCF KRVT ++P G+
Sbjct: 1483 REMPVDLILLDLQDFDVILGMDWLASYHASVDCFEKRVTFSIPGQPKFSFEGK 1535
>emb|CAN62233.1| hypothetical protein VITISV_010121 [Vitis vinifera]
Length = 1797
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 8 RMISVELILMPVNDYDVILGMDWLSEYQTQIDCFRKRVTLTLPSGELLRIHGE 166
R + V+L+L+ + D+DVILGMDWL+ Y IDCF KRVT ++P G+
Sbjct: 153 REMLVDLVLLDLQDFDVILGMDWLTSYHASIDCFEKRVTFSIPGQPKFSFEGK 205
Score = 59.3 bits (142), Expect = 5e-07
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 8 RMISVELILMPVNDYDVILGMDWLSEYQTQIDCFRKRVTLTLPSGELLRIHGE 166
R + ++L+L+ + D+DVILGMDWL+ Y +DCF KRVT ++P G+
Sbjct: 859 REMPIDLVLLDLQDFDVILGMDWLASYHASVDCFEKRVTFSIPGQPKFSFEGK 911
>gb|ABA97341.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1325
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ +LPR G D +W
Sbjct: 960 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITSLPRTSSGHDSIW 1016
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1017 VIVDRLTKVAHFIPVKTT 1034
>emb|CAE04203.2| OSJNBa0011E07.12 [Oryza sativa Japonica Group]
Length = 1473
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ +LPR G D +W
Sbjct: 1078 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITSLPRTSSGHDSIW 1134
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1135 VIVDRLTKVAHFIPVKTT 1152
>emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L LRI K ++I MDF+ LPR G D +W
Sbjct: 1086 IAEYVALCDVCQRVKAEHQKPAGLLQPLRIPEWKW---EEIGMDFITGLPRTSAGHDSIW 1142
Query: 248 VIVDRVTNVAHFLPIKST 301
V+VDR+T VAHF+P+K+T
Sbjct: 1143 VVVDRLTKVAHFIPVKTT 1160
>gb|AAK13123.1|AC080019_15 Similar to Transposon MAGGYgagandpolgenehomologues [Oryza sativa
Japonica Group]
Length = 2157
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1462 IAEYVAVCDICQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1518
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1519 VIVDRLTKVAHFIPVKTT 1536
Score = 56.2 bits (134), Expect = 5e-06
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +2
Query: 182 DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
D+I MDF+ LP+ Q G D +WV+VDR+T VA F+P+K+T
Sbjct: 2057 DEIGMDFITGLPKTQDGYDSIWVVVDRLTKVARFIPVKTT 2096
>gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108709213|gb|ABF97008.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1652
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1257 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1313
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1314 VIVDRLTKVAHFIPVKTT 1331
>gb|ABA97301.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1447
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1052 IAEYVAVCDVCQRVKAEHQKPTGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1108
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1109 VIVDRLTKVAHFIPVKTT 1126
>gb|ABA98841.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1100 IAEYVAVCDICQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1156
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1157 VIVDRLTKVAHFIPVKTT 1174
>gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1017 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1073
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1074 VIVDRLTKVAHFIPVKTT 1091
>gb|ABA98580.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1371
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 976 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1032
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1033 VIVDRLTKVAHFIPVKTT 1050
>gb|ABA98118.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2022
Score = 58.9 bits (141), Expect = 7e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 182 DKIAMDFVGALPRNQKGEDMVWVIVDRVTNVAHFLPIKST 301
++I MDF+ LPR G D +WVIVDR+T VAHF+P+K+T
Sbjct: 1726 EEIGMDFITGLPRTSSGHDFIWVIVDRLTKVAHFIPVKTT 1765
>gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1078 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1134
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1135 VIVDRLTKVAHFIPVKTT 1152
>gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +2
Query: 77 LSEYQTQID-CFRKRVTLTLPSGEL--LRIHGEKKNI*DKIAMDFVGALPRNQKGEDMVW 247
++EY D C R + P+G L L+I K ++I MDF+ LPR G D +W
Sbjct: 1779 IAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW---EEIGMDFITGLPRTSSGHDSIW 1835
Query: 248 VIVDRVTNVAHFLPIKST 301
VIVDR+T VAHF+P+K+T
Sbjct: 1836 VIVDRLTKVAHFIPVKTT 1853