BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00031652
         (297 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007207635.1| hypothetical protein PRUPE_ppa021864mg [Prun...    87   2e-15
emb|CBI26593.3| unnamed protein product [Vitis vinifera]               82   1e-13
ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containi...    82   1e-13
ref|XP_002307076.2| pentatricopeptide repeat-containing family p...    80   4e-13
gb|EXB29469.1| hypothetical protein L484_022141 [Morus notabilis]      78   1e-12
ref|XP_007047919.1| Pentatricopeptide repeat (PPR) superfamily p...    70   4e-10
ref|XP_006404950.1| hypothetical protein EUTSA_v10000054mg [Eutr...    69   7e-10
ref|XP_006390828.1| hypothetical protein EUTSA_v10018157mg [Eutr...    65   1e-08
ref|XP_006353228.1| PREDICTED: pentatricopeptide repeat-containi...    64   3e-08
ref|XP_002866898.1| pentatricopeptide repeat-containing protein ...    62   1e-07
ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containi...    61   2e-07
ref|NP_680777.2| pentatricopeptide repeat-containing protein [Ar...    60   4e-07
ref|XP_006283167.1| hypothetical protein CARUB_v10004198mg [Caps...    58   2e-06
ref|XP_004491447.1| PREDICTED: pentatricopeptide repeat-containi...    57   4e-06

>ref|XP_007207635.1| hypothetical protein PRUPE_ppa021864mg [Prunus persica]
           gi|462403277|gb|EMJ08834.1| hypothetical protein
           PRUPE_ppa021864mg [Prunus persica]
          Length = 748

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = +3

Query: 24  KSCYLRKRVPFSLQLCFLSSLIDQTNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSN 203
           K  YL KRVP SL  C  S+    +N +   L  FLSN  S+++ L QSHA IVT+G++N
Sbjct: 7   KPIYLFKRVPSSLPFCSFSA----SNYLNCQLHSFLSNQNSNLQYLSQSHALIVTSGNAN 62

Query: 204 NIFVAAKLISSYSSFNKPNLSTQVFNAINPK 296
           NIF+AAKLIS Y+S +KP  ST+VF ++ PK
Sbjct: 63  NIFIAAKLISFYASLSKPTFSTKVFGSVCPK 93


>emb|CBI26593.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/60 (61%), Positives = 53/60 (88%)
 Frame = +3

Query: 108 YTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQVFNAI 287
           + +L+  LSN ISS+K+LLQSHAFI+T+G+SNNIF+A+KLIS Y+SF+KP+ ST++F+ I
Sbjct: 34  FNYLNHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEI 93


>ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 37/60 (61%), Positives = 53/60 (88%)
 Frame = +3

Query: 108 YTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQVFNAI 287
           + +L+  LSN ISS+K+LLQSHAFI+T+G+SNNIF+A+KLIS Y+SF+KP+ ST++F+ I
Sbjct: 34  FNYLNHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEI 93


>ref|XP_002307076.2| pentatricopeptide repeat-containing family protein, partial
           [Populus trichocarpa] gi|550338333|gb|EEE94072.2|
           pentatricopeptide repeat-containing family protein,
           partial [Populus trichocarpa]
          Length = 744

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 39/86 (45%), Positives = 60/86 (69%)
 Frame = +3

Query: 39  RKRVPFSLQLCFLSSLIDQTNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVA 218
           R+  P   Q+ + SS    +N +  H+D FLSN   +++SL +SHA I+TTG++NN+F++
Sbjct: 13  RRLFPSPFQISYHSS----SNYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANNVFIS 68

Query: 219 AKLISSYSSFNKPNLSTQVFNAINPK 296
           +KLIS Y+SF KP+ ST VF++ N K
Sbjct: 69  SKLISLYASFRKPHSSTYVFDSTNQK 94


>gb|EXB29469.1| hypothetical protein L484_022141 [Morus notabilis]
          Length = 778

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 45/92 (48%), Positives = 61/92 (66%)
 Frame = +3

Query: 21  LKSCYLRKRVPFSLQLCFLSSLIDQTNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHS 200
           LKS  + KR P  L    LS+     N +   L  FLS   S+++SLL+SHA I+T+G+S
Sbjct: 4   LKSTRVFKRFPSFLPFTSLST---SPNYLNDQLSLFLSAKTSTLQSLLKSHALIITSGNS 60

Query: 201 NNIFVAAKLISSYSSFNKPNLSTQVFNAINPK 296
           NNIF+A+KLIS Y+S N+P  ST VF +I+PK
Sbjct: 61  NNIFIASKLISLYASLNRPTNSTLVFYSIHPK 92


>ref|XP_007047919.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508700180|gb|EOX92076.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 784

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 4/94 (4%)
 Frame = +3

Query: 21  LKSCYLRKRVPF-SLQLCFLSSLIDQTNLVYTHLDDFLSNPISS--IKSLLQSHAFIVTT 191
           LK+  + +  P  SLQL   S+    +  +   L  FLSN  SS  ++SLLQSHA I+TT
Sbjct: 4   LKATQMLRHFPSTSLQLSSCST----SGYLNCQLHSFLSNNPSSSTLQSLLQSHALIITT 59

Query: 192 GHS-NNIFVAAKLISSYSSFNKPNLSTQVFNAIN 290
           G+S NNIF+A+KLIS Y+ FNKP+ ST+VF++++
Sbjct: 60  GNSTNNIFIASKLISLYAFFNKPHFSTKVFDSLS 93


>ref|XP_006404950.1| hypothetical protein EUTSA_v10000054mg [Eutrema salsugineum]
           gi|557106078|gb|ESQ46403.1| hypothetical protein
           EUTSA_v10000054mg [Eutrema salsugineum]
          Length = 779

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 34/91 (37%), Positives = 63/91 (69%)
 Frame = +3

Query: 24  KSCYLRKRVPFSLQLCFLSSLIDQTNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSN 203
           ++C L K  P  + +  +SS    ++ +  H+   L + +S+++SL + +A I+T G+S+
Sbjct: 4   RACLLFK--PSCVTVRTISSSSSSSSYIDRHISVILCDKLSTLESLRKHNALIITGGNSD 61

Query: 204 NIFVAAKLISSYSSFNKPNLSTQVFNAINPK 296
           N+FVA+KLISSY+SF KPN+S++VF+ ++ +
Sbjct: 62  NVFVASKLISSYASFGKPNISSKVFDLVSQR 92


>ref|XP_006390828.1| hypothetical protein EUTSA_v10018157mg [Eutrema salsugineum]
           gi|557087262|gb|ESQ28114.1| hypothetical protein
           EUTSA_v10018157mg [Eutrema salsugineum]
          Length = 776

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 33/71 (46%), Positives = 52/71 (73%)
 Frame = +3

Query: 78  SSLIDQTNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKP 257
           SS ID+      H+   L + +SS++SL + +A  +T G+S+NIFVA+KLISSY+S+ KP
Sbjct: 25  SSYIDR------HISVILCDKVSSLESLRRHNALTITGGNSDNIFVASKLISSYASYGKP 78

Query: 258 NLSTQVFNAIN 290
           NLS+ VF++++
Sbjct: 79  NLSSTVFDSVS 89


>ref|XP_006353228.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Solanum tuberosum]
          Length = 761

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 31/51 (60%), Positives = 42/51 (82%)
 Frame = +3

Query: 144 SSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQVFNAINPK 296
           S++KSLLQSHAFI+TTGH++N+++AAKLIS Y+S N    S +VF+ IN K
Sbjct: 24  SNLKSLLQSHAFIITTGHTHNVYIAAKLISLYASNNNLISSRKVFDFINFK 74


>ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312734|gb|EFH43157.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 742

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/64 (46%), Positives = 47/64 (73%)
 Frame = +3

Query: 96  TNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQV 275
           ++ V  H+   L +   S++SL + +A I+T G+S NIFVA+KLISSY+S+ KPNLS++V
Sbjct: 27  SSYVDRHISVILCDQSLSLESLRKHNALIITGGNSENIFVASKLISSYASYGKPNLSSRV 86

Query: 276 FNAI 287
           F+ +
Sbjct: 87  FDLV 90


>ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = +3

Query: 54  FSLQLCFLSSLIDQTNLVYTH--LDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKL 227
           F ++  F S+    ++  Y +  L  F S P  + +SLLQ H+ I+TTG+SNN+F A KL
Sbjct: 19  FHIRFAFSSTFTSLSDSHYPNNCLHSFFSKPNLTFQSLLQFHSLIITTGNSNNVFFATKL 78

Query: 228 ISSYSSFNKPNLSTQVFNAINPK 296
           ++ Y+   KP  ST +F  I+ K
Sbjct: 79  MAFYAYHRKPAFSTHLFRLIHSK 101


>ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
           gi|332661744|gb|AEE87144.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = +3

Query: 114 HLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQVFNAI 287
           H+   L +   S++SL + +A I+T G S NIFVA+KLISSY+S+ KPNLS++VF+ +
Sbjct: 28  HISVILCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLV 85


>ref|XP_006283167.1| hypothetical protein CARUB_v10004198mg [Capsella rubella]
           gi|482551872|gb|EOA16065.1| hypothetical protein
           CARUB_v10004198mg [Capsella rubella]
          Length = 771

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = +3

Query: 96  TNLVYTHLDDFLSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQV 275
           ++ V  H+   L +    ++SL +  A I+T G+S+NIFVA+KLISSY+S  KPNLS++V
Sbjct: 16  SSYVDRHISVILCDQSLCLESLRKLTALIITGGNSDNIFVASKLISSYASHGKPNLSSRV 75

Query: 276 FNAINPK 296
           F+ ++ +
Sbjct: 76  FDLVSSR 82


>ref|XP_004491447.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like isoform X1 [Cicer arietinum]
           gi|502099305|ref|XP_004491448.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like isoform X2 [Cicer arietinum]
          Length = 760

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 27/53 (50%), Positives = 40/53 (75%)
 Frame = +3

Query: 129 LSNPISSIKSLLQSHAFIVTTGHSNNIFVAAKLISSYSSFNKPNLSTQVFNAI 287
           LS  I++++SLLQ HA  VTTG+S N F+AAKLIS Y + N P+ S+ +F+++
Sbjct: 19  LSKRITTVESLLQFHAVTVTTGNSTNPFIAAKLISLYDTLNHPSSSSTLFHSL 71