BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00031331
         (368 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006353313.1| PREDICTED: DNA mismatch repair protein MSH3-...   107   2e-21
ref|XP_004234387.1| PREDICTED: DNA mismatch repair protein MSH3-...   107   2e-21
ref|XP_004308095.1| PREDICTED: DNA mismatch repair protein MSH3-...   103   2e-20
gb|EYU25083.1| hypothetical protein MIMGU_mgv1a000622mg [Mimulus...   102   4e-20
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   102   7e-20
gb|EXC15971.1| DNA mismatch repair protein Msh3 [Morus notabilis]     101   9e-20
emb|CBI37346.3| unnamed protein product [Vitis vinifera]              100   2e-19
emb|CBI29513.3| unnamed protein product [Vitis vinifera]              100   2e-19
ref|NP_194284.2| DNA mismatch repair protein MSH3 [Arabidopsis t...   100   3e-19
emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsi...   100   3e-19
emb|CAA18172.1| putative DNA mismatch repair protein [Arabidopsi...   100   3e-19
ref|XP_007218906.1| hypothetical protein PRUPE_ppa000560mg [Prun...   100   4e-19
ref|XP_007038669.1| DNA mismatch repair protein MSH3 isoform 2, ...    99   6e-19
ref|XP_007038668.1| DNA mismatch repair protein MSH3 isoform 1 [...    99   6e-19
ref|XP_006606108.1| PREDICTED: DNA mismatch repair protein MSH3-...    99   8e-19
ref|XP_006606107.1| PREDICTED: DNA mismatch repair protein MSH3-...    99   8e-19
ref|XP_006606106.1| PREDICTED: DNA mismatch repair protein MSH3-...    99   8e-19
ref|XP_006606105.1| PREDICTED: DNA mismatch repair protein MSH3-...    99   8e-19
ref|XP_006606104.1| PREDICTED: DNA mismatch repair protein MSH3-...    99   8e-19
ref|XP_006283020.1| hypothetical protein CARUB_v10004012mg [Caps...    99   8e-19

>ref|XP_006353313.1| PREDICTED: DNA mismatch repair protein MSH3-like [Solanum
           tuberosum]
          Length = 1117

 Score =  107 bits (266), Expect = 2e-21
 Identities = 56/82 (68%), Positives = 61/82 (74%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYK 67
           NP L HQKFL KLLE               NP YTPLE QVVELK+KYPDVLLMIEVGY+
Sbjct: 90  NPTL-HQKFLDKLLEPSYHLLEPSKCHEIANPKYTPLEQQVVELKTKYPDVLLMIEVGYR 148

Query: 66  FRFFGEDAEIAARVLGIYAHID 1
           +RFFG+DAE AARVLGIYAH+D
Sbjct: 149 YRFFGQDAENAARVLGIYAHMD 170


>ref|XP_004234387.1| PREDICTED: DNA mismatch repair protein MSH3-like [Solanum
           lycopersicum]
          Length = 1117

 Score =  107 bits (266), Expect = 2e-21
 Identities = 56/82 (68%), Positives = 61/82 (74%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYK 67
           NP L HQKFL KLLE               NP YTPLE QVVELK+KYPDVLLMIEVGY+
Sbjct: 90  NPTL-HQKFLDKLLEPSYHLLEPSKCHEIANPKYTPLEQQVVELKTKYPDVLLMIEVGYR 148

Query: 66  FRFFGEDAEIAARVLGIYAHID 1
           +RFFG+DAE AARVLGIYAH+D
Sbjct: 149 YRFFGQDAENAARVLGIYAHMD 170


>ref|XP_004308095.1| PREDICTED: DNA mismatch repair protein MSH3-like [Fragaria vesca
           subsp. vesca]
          Length = 1106

 Score =  103 bits (258), Expect = 2e-20
 Identities = 56/82 (68%), Positives = 61/82 (74%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYK 67
           NP L HQKFLQKLLE               NP  TPLELQVV+LK +YPDVLLM+EVGYK
Sbjct: 84  NPSL-HQKFLQKLLEPSTSIPQPPPP---SNPKLTPLELQVVDLKKRYPDVLLMVEVGYK 139

Query: 66  FRFFGEDAEIAARVLGIYAHID 1
           +RFFGEDAEIAAR LGIYAH+D
Sbjct: 140 YRFFGEDAEIAARNLGIYAHMD 161


>gb|EYU25083.1| hypothetical protein MIMGU_mgv1a000622mg [Mimulus guttatus]
          Length = 1042

 Score =  102 bits (255), Expect = 4e-20
 Identities = 58/85 (68%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXSK---NPIYTPLELQVVELKSKYPDVLLMIEV 76
           NP L HQKFL KLLE             S    NP YTPLE QVVELK++YPDVLLMIEV
Sbjct: 78  NPTL-HQKFLNKLLEPSQDLLEPSRISNSTQAPNPKYTPLEQQVVELKARYPDVLLMIEV 136

Query: 75  GYKFRFFGEDAEIAARVLGIYAHID 1
           GYK+RFFGEDAE AARVLGIYAH+D
Sbjct: 137 GYKYRFFGEDAENAARVLGIYAHMD 161


>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  102 bits (253), Expect = 7e-20
 Identities = 52/77 (67%), Positives = 59/77 (76%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQKF+QKLLE             +K   YTPLE QVV+LK KYPDVLLM+EVGY++RFFG
Sbjct: 88  HQKFVQKLLEPSSSTPTKLPLPTTK---YTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFG 144

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 145 EDAEIAARVLGIYAHVD 161


>gb|EXC15971.1| DNA mismatch repair protein Msh3 [Morus notabilis]
          Length = 1080

 Score =  101 bits (252), Expect = 9e-20
 Identities = 53/84 (63%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPI---YTPLELQVVELKSKYPDVLLMIEVG 73
           P   H+KFLQKLLE             ++N     YTPLE QVVELK K+PDVLLM+EVG
Sbjct: 81  PPSLHEKFLQKLLEPTHNLPEKPPPSQAQNGAAVKYTPLEQQVVELKRKHPDVLLMVEVG 140

Query: 72  YKFRFFGEDAEIAARVLGIYAHID 1
           YK+RFFG+DAEIAARVLGIYAH+D
Sbjct: 141 YKYRFFGDDAEIAARVLGIYAHVD 164


>emb|CBI37346.3| unnamed protein product [Vitis vinifera]
          Length = 490

 Score =  100 bits (250), Expect = 2e-19
 Identities = 51/77 (66%), Positives = 59/77 (76%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQKF+QKLL+             +K   YTPLE QVV+LK KYPDVLLM+EVGY++RFFG
Sbjct: 88  HQKFVQKLLQPSSSTPTKLPLPTTK---YTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFG 144

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 145 EDAEIAARVLGIYAHVD 161


>emb|CBI29513.3| unnamed protein product [Vitis vinifera]
          Length = 470

 Score =  100 bits (250), Expect = 2e-19
 Identities = 52/77 (67%), Positives = 58/77 (75%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQKFLQKLLE             +K   YTPLE QVV+LK KYPDVLLM+EVGY++RFFG
Sbjct: 90  HQKFLQKLLEPSSSTPTKLPLPTTK---YTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFG 146

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVL IYAH+D
Sbjct: 147 EDAEIAARVLAIYAHVD 163


>ref|NP_194284.2| DNA mismatch repair protein MSH3 [Arabidopsis thaliana]
           gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
           mismatch repair protein MSH3; Short=AtMSH3; AltName:
           Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
           Msh3 protein [Arabidopsis thaliana]
           gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
           MSH3 [Arabidopsis thaliana]
          Length = 1081

 Score =  100 bits (248), Expect = 3e-19
 Identities = 51/77 (66%), Positives = 58/77 (75%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQ+FLQ+ LE              K   YTPLE QVVELKSKYPDV+LM+EVGY++RFFG
Sbjct: 79  HQRFLQRFLEPSPEEYVPETSSSRK---YTPLEQQVVELKSKYPDVVLMVEVGYRYRFFG 135

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 136 EDAEIAARVLGIYAHMD 152


>emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
          Length = 1076

 Score =  100 bits (248), Expect = 3e-19
 Identities = 51/77 (66%), Positives = 58/77 (75%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQ+FLQ+ LE              K   YTPLE QVVELKSKYPDV+LM+EVGY++RFFG
Sbjct: 79  HQRFLQRFLEPSPEEYVPETSSSRK---YTPLEQQVVELKSKYPDVVLMVEVGYRYRFFG 135

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 136 EDAEIAARVLGIYAHMD 152


>emb|CAA18172.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
          Length = 1076

 Score =  100 bits (248), Expect = 3e-19
 Identities = 51/77 (66%), Positives = 58/77 (75%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           HQ+FLQ+ LE              K   YTPLE QVVELKSKYPDV+LM+EVGY++RFFG
Sbjct: 79  HQRFLQRFLEPSPEEYVPETSSSRK---YTPLEQQVVELKSKYPDVVLMVEVGYRYRFFG 135

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 136 EDAEIAARVLGIYAHMD 152


>ref|XP_007218906.1| hypothetical protein PRUPE_ppa000560mg [Prunus persica]
           gi|462415368|gb|EMJ20105.1| hypothetical protein
           PRUPE_ppa000560mg [Prunus persica]
          Length = 1096

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 55/84 (65%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPI--YTPLELQVVELKSKYPDVLLMIEVG 73
           NP L HQKFLQKLLE               NP   +TPLE QVV+LK +YPDVLLM+EVG
Sbjct: 94  NPSL-HQKFLQKLLEPSSDVPEPSPS---SNPPAKFTPLEQQVVDLKKRYPDVLLMVEVG 149

Query: 72  YKFRFFGEDAEIAARVLGIYAHID 1
           YK+RFFG+DAEIAARVLGIYAH+D
Sbjct: 150 YKYRFFGQDAEIAARVLGIYAHMD 173


>ref|XP_007038669.1| DNA mismatch repair protein MSH3 isoform 2, partial [Theobroma
           cacao] gi|508775914|gb|EOY23170.1| DNA mismatch repair
           protein MSH3 isoform 2, partial [Theobroma cacao]
          Length = 861

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 54/84 (64%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXS--KNPIYTPLELQVVELKSKYPDVLLMIEVG 73
           NP L HQKFL KLLE             S   +  YTPLE QVV+LK+KYPDVLLM+EVG
Sbjct: 87  NPSL-HQKFLHKLLEPSPRRPLEPTVELSGSDHKKYTPLEQQVVDLKNKYPDVLLMVEVG 145

Query: 72  YKFRFFGEDAEIAARVLGIYAHID 1
           Y+FRFFG+DAEIAA+VLGIYAH+D
Sbjct: 146 YRFRFFGKDAEIAAKVLGIYAHVD 169


>ref|XP_007038668.1| DNA mismatch repair protein MSH3 isoform 1 [Theobroma cacao]
           gi|508775913|gb|EOY23169.1| DNA mismatch repair protein
           MSH3 isoform 1 [Theobroma cacao]
          Length = 1115

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 54/84 (64%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
 Frame = -3

Query: 246 NPKLTHQKFLQKLLEXXXXXXXXXXXXXS--KNPIYTPLELQVVELKSKYPDVLLMIEVG 73
           NP L HQKFL KLLE             S   +  YTPLE QVV+LK+KYPDVLLM+EVG
Sbjct: 87  NPSL-HQKFLHKLLEPSPRRPLEPTVELSGSDHKKYTPLEQQVVDLKNKYPDVLLMVEVG 145

Query: 72  YKFRFFGEDAEIAARVLGIYAHID 1
           Y+FRFFG+DAEIAA+VLGIYAH+D
Sbjct: 146 YRFRFFGKDAEIAAKVLGIYAHVD 169


>ref|XP_006606108.1| PREDICTED: DNA mismatch repair protein MSH3-like isoform X5
           [Glycine max]
          Length = 835

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKF 64
           P   HQ+FLQKLLE              K P YTPLE QV++LK+K+PDVLLM+EVGYK+
Sbjct: 65  PPSLHQRFLQKLLEPSTPQQHPASSS--KPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKY 122

Query: 63  RFFGEDAEIAARVLGIYAHID 1
           RFFG+DAE A+RVLGIYAH+D
Sbjct: 123 RFFGQDAEHASRVLGIYAHMD 143


>ref|XP_006606107.1| PREDICTED: DNA mismatch repair protein MSH3-like isoform X4
           [Glycine max]
          Length = 967

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKF 64
           P   HQ+FLQKLLE              K P YTPLE QV++LK+K+PDVLLM+EVGYK+
Sbjct: 65  PPSLHQRFLQKLLEPSTPQQHPASSS--KPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKY 122

Query: 63  RFFGEDAEIAARVLGIYAHID 1
           RFFG+DAE A+RVLGIYAH+D
Sbjct: 123 RFFGQDAEHASRVLGIYAHMD 143


>ref|XP_006606106.1| PREDICTED: DNA mismatch repair protein MSH3-like isoform X3
           [Glycine max]
          Length = 968

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKF 64
           P   HQ+FLQKLLE              K P YTPLE QV++LK+K+PDVLLM+EVGYK+
Sbjct: 65  PPSLHQRFLQKLLEPSTPQQHPASSS--KPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKY 122

Query: 63  RFFGEDAEIAARVLGIYAHID 1
           RFFG+DAE A+RVLGIYAH+D
Sbjct: 123 RFFGQDAEHASRVLGIYAHMD 143


>ref|XP_006606105.1| PREDICTED: DNA mismatch repair protein MSH3-like isoform X2
           [Glycine max]
          Length = 991

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKF 64
           P   HQ+FLQKLLE              K P YTPLE QV++LK+K+PDVLLM+EVGYK+
Sbjct: 65  PPSLHQRFLQKLLEPSTPQQHPASSS--KPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKY 122

Query: 63  RFFGEDAEIAARVLGIYAHID 1
           RFFG+DAE A+RVLGIYAH+D
Sbjct: 123 RFFGQDAEHASRVLGIYAHMD 143


>ref|XP_006606104.1| PREDICTED: DNA mismatch repair protein MSH3-like isoform X1
           [Glycine max]
          Length = 1070

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 PKLTHQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKF 64
           P   HQ+FLQKLLE              K P YTPLE QV++LK+K+PDVLLM+EVGYK+
Sbjct: 65  PPSLHQRFLQKLLEPSTPQQHPASSS--KPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKY 122

Query: 63  RFFGEDAEIAARVLGIYAHID 1
           RFFG+DAE A+RVLGIYAH+D
Sbjct: 123 RFFGQDAEHASRVLGIYAHMD 143


>ref|XP_006283020.1| hypothetical protein CARUB_v10004012mg [Capsella rubella]
           gi|482551725|gb|EOA15918.1| hypothetical protein
           CARUB_v10004012mg [Capsella rubella]
          Length = 1182

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/77 (64%), Positives = 58/77 (75%)
 Frame = -3

Query: 231 HQKFLQKLLEXXXXXXXXXXXXXSKNPIYTPLELQVVELKSKYPDVLLMIEVGYKFRFFG 52
           H++FLQ+ LE              K   YTPLE QVVELKSKYPDV+LM+EVGY++RFFG
Sbjct: 168 HRRFLQRFLEPSPEESVPATSSARK---YTPLEQQVVELKSKYPDVVLMVEVGYRYRFFG 224

Query: 51  EDAEIAARVLGIYAHID 1
           EDAEIAARVLGIYAH+D
Sbjct: 225 EDAEIAARVLGIYAHMD 241