BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00031312
         (362 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006289934.1| hypothetical protein CARUB_v10003556mg [Caps...    81   1e-13
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...    80   2e-13
ref|XP_006396354.1| hypothetical protein EUTSA_v10028437mg [Eutr...    80   3e-13
ref|XP_002302689.2| hypothetical protein POPTR_0002s18390g [Popu...    80   3e-13
gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]                          79   5e-13
ref|NP_192066.2| pentatricopeptide repeat-containing protein [Ar...    79   5e-13
ref|XP_006491416.1| PREDICTED: pentatricopeptide repeat-containi...    79   7e-13
ref|XP_006444679.1| hypothetical protein CICLE_v10023806mg [Citr...    79   7e-13
ref|XP_006386676.1| pentatricopeptide repeat-containing family p...    78   1e-12
ref|XP_006353247.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...    76   6e-12
ref|XP_004250507.1| PREDICTED: pentatricopeptide repeat-containi...    75   7e-12
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi...    75   1e-11
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...    73   4e-11
ref|XP_007051367.1| Pentatricopeptide repeat-containing protein,...    73   5e-11
ref|XP_007220146.1| hypothetical protein PRUPE_ppa019625mg [Prun...    66   6e-09
gb|EXC13626.1| hypothetical protein L484_019583 [Morus notabilis]      60   2e-07
ref|XP_004308750.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-06

>ref|XP_006289934.1| hypothetical protein CARUB_v10003556mg [Capsella rubella]
           gi|482558640|gb|EOA22832.1| hypothetical protein
           CARUB_v10003556mg [Capsella rubella]
          Length = 802

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 40/63 (63%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT++L+A+SIP+SES+V QILRR+SI +S K+DFF+W  SLR G+KHS S YS IF  VC
Sbjct: 44  GTRSLDANSIPISESVVLQILRRSSIDSSKKLDFFRWCFSLRPGYKHSASAYSQIFRTVC 103

Query: 9   RAG 1
           R G
Sbjct: 104 RTG 106


>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 40/63 (63%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT+ L+A+SIP+SE +V QILRRNSI  S K+DFF+W  SLR+G+KHS S YS IF  VC
Sbjct: 44  GTRGLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRTGYKHSVSAYSQIFRTVC 103

Query: 9   RAG 1
           R G
Sbjct: 104 RTG 106


>ref|XP_006396354.1| hypothetical protein EUTSA_v10028437mg [Eutrema salsugineum]
           gi|557097371|gb|ESQ37807.1| hypothetical protein
           EUTSA_v10028437mg [Eutrema salsugineum]
          Length = 801

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT+NL+A+S P+SE +V QILRRNS+  S K+DFF+W  SLR G+KHS S YS IF  VC
Sbjct: 44  GTRNLDANSTPISEPIVLQILRRNSLDPSKKLDFFRWCFSLRPGYKHSASAYSQIFRTVC 103

Query: 9   RAG 1
           R G
Sbjct: 104 RTG 106


>ref|XP_002302689.2| hypothetical protein POPTR_0002s18390g [Populus trichocarpa]
           gi|550345304|gb|EEE81962.2| hypothetical protein
           POPTR_0002s18390g [Populus trichocarpa]
          Length = 776

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 38/62 (61%), Positives = 50/62 (80%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCR 7
           GT++L+  SIPLSESLV QILRRNS+ +S K++FFKW S+R  +KHS STYS +F  +CR
Sbjct: 18  GTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCSVRHIYKHSVSTYSQMFSTLCR 77

Query: 6   AG 1
           +G
Sbjct: 78  SG 79


>gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
          Length = 508

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/63 (61%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT++L+A+SIP+SE +V QILRRNSI  S K+DFF+W  SLR G+KHS + YS IF  VC
Sbjct: 44  GTRSLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVC 103

Query: 9   RAG 1
           R G
Sbjct: 104 RTG 106


>ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g01570 gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21
           [Arabidopsis thaliana] gi|24797024|gb|AAN64524.1|
           At4g01570/T15B16_21 [Arabidopsis thaliana]
           gi|332656643|gb|AEE82043.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 805

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/63 (61%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT++L+A+SIP+SE +V QILRRNSI  S K+DFF+W  SLR G+KHS + YS IF  VC
Sbjct: 44  GTRSLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVC 103

Query: 9   RAG 1
           R G
Sbjct: 104 RTG 106


>ref|XP_006491416.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Citrus sinensis]
          Length = 790

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = -3

Query: 279 RRTLLSVINGNSSQLENXXXXXXXXXXXXXSGTQNLNAHSIPLSESLVEQILRRNSIRAS 100
           R+TL   +N  S QL +             SGT+NL+  SIP+SE LV Q+L +NS+ +S
Sbjct: 5   RKTLSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSS 64

Query: 99  TKIDFFKW-ASLRSGFKHSPSTYSLIFEAVCRAG 1
            K+DFF+W +SLR  +KH+  TYS IF  VCRAG
Sbjct: 65  KKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAG 98


>ref|XP_006444679.1| hypothetical protein CICLE_v10023806mg [Citrus clementina]
           gi|557546941|gb|ESR57919.1| hypothetical protein
           CICLE_v10023806mg [Citrus clementina]
          Length = 619

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = -3

Query: 279 RRTLLSVINGNSSQLENXXXXXXXXXXXXXSGTQNLNAHSIPLSESLVEQILRRNSIRAS 100
           R+TL   +N  S QL +             SGT+NL+  SIP+SE LV Q+L +NS+ +S
Sbjct: 5   RKTLSPPVNSASLQLGSILLLAFVTKTLKESGTRNLDPRSIPISEPLVLQVLGKNSLDSS 64

Query: 99  TKIDFFKW-ASLRSGFKHSPSTYSLIFEAVCRAG 1
            K+DFF+W +SLR  +KH+  TYS IF  VCRAG
Sbjct: 65  KKLDFFRWCSSLRPIYKHTACTYSHIFRTVCRAG 98


>ref|XP_006386676.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550345301|gb|ERP64473.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 776

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 37/62 (59%), Positives = 49/62 (79%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCR 7
           GT++L+  SIPLSE LV QILRRNS+ +S K++FFKW S+R  +KHS STYS +F  +CR
Sbjct: 18  GTRSLDPDSIPLSEYLVLQILRRNSLDSSKKMEFFKWCSVRHIYKHSVSTYSQMFSTLCR 77

Query: 6   AG 1
           +G
Sbjct: 78  SG 79


>ref|XP_006353247.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like isoform X1 [Solanum tuberosum]
          Length = 816

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -3

Query: 186 GTQNLNAH--SIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAV 13
           GT+NL  +  SIPLSESLV Q+LRRN++ A  K+DFFKW SLR  FKHS  TYS +F+++
Sbjct: 55  GTRNLEQYGDSIPLSESLVLQVLRRNNLDAEKKLDFFKWCSLRPSFKHSTETYSQMFKSI 114

Query: 12  C 10
           C
Sbjct: 115 C 115


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 40/88 (45%), Positives = 53/88 (60%)
 Frame = -3

Query: 264 SVINGNSSQLENXXXXXXXXXXXXXSGTQNLNAHSIPLSESLVEQILRRNSIRASTKIDF 85
           S+ + +S+QLE+             SG +NL+   IPLSE L+ QILR+NS+ AS KI+F
Sbjct: 40  SLSSSSSNQLESILLVAFLNKALSESGVRNLDPDFIPLSEPLILQILRQNSLDASKKIEF 99

Query: 84  FKWASLRSGFKHSPSTYSLIFEAVCRAG 1
           FKW S    +KHS   YS +F  VC AG
Sbjct: 100 FKWCSFSHNYKHSACVYSHMFRTVCNAG 127


>ref|XP_004250507.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Solanum lycopersicum]
          Length = 819

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
 Frame = -3

Query: 186 GTQNLNAHS--IPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAV 13
           GT+NL  +   IPLSESLV Q+LRRN++ A  K+DFFKW SLR  FKHS  TYS +F+ +
Sbjct: 58  GTRNLEKYGDLIPLSESLVLQVLRRNNLDAEKKLDFFKWCSLRPNFKHSTETYSQMFKCI 117

Query: 12  C 10
           C
Sbjct: 118 C 118


>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
           gi|449523383|ref|XP_004168703.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
          Length = 803

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 34/62 (54%), Positives = 42/62 (67%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCR 7
           GT+ L  HS+P+S  L+ QIL   S+  S K+DFFKW SL   F HSPSTYS IF  +CR
Sbjct: 43  GTRTLQHHSLPISHPLLLQILHSRSLNPSHKLDFFKWCSLAPNFNHSPSTYSQIFHILCR 102

Query: 6   AG 1
           +G
Sbjct: 103 SG 104


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 43/97 (44%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = -3

Query: 288 MCHRRTLLS-VINGNSSQLENXXXXXXXXXXXXXSGTQNLNAHSIPLSESLVEQILRRNS 112
           M H RTL S    G   +L +              GT++ +  SIP+SESLV QIL RNS
Sbjct: 1   MRHGRTLSSSAAAGAGVKLGDMLLVASISKTLSERGTRSPDLESIPISESLVVQILGRNS 60

Query: 111 IRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCRAG 1
           I    K++FF+W S R  +KHS   YS IF  VCRAG
Sbjct: 61  IDVFRKVEFFRWCSFRHNYKHSVGAYSHIFRIVCRAG 97


>ref|XP_007051367.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
           cacao] gi|508703628|gb|EOX95524.1| Pentatricopeptide
           repeat-containing protein, putative [Theobroma cacao]
          Length = 807

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWA-SLRSGFKHSPSTYSLIFEAVC 10
           GT+NL+ +SIP+SE LV QILR++S+  S K+DFF W  S++  FKHS  TYS IF  +C
Sbjct: 40  GTRNLDPNSIPISEPLVIQILRKHSLEPSKKLDFFNWCRSVKPNFKHSAVTYSHIFRTLC 99

Query: 9   RAG 1
           R+G
Sbjct: 100 RSG 102


>ref|XP_007220146.1| hypothetical protein PRUPE_ppa019625mg [Prunus persica]
           gi|462416608|gb|EMJ21345.1| hypothetical protein
           PRUPE_ppa019625mg [Prunus persica]
          Length = 558

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -3

Query: 288 MCHRRTLLSVINGNSSQLENXXXXXXXXXXXXXSGTQNL-NAHSIPLSESLVEQILRRNS 112
           M H R  L     ++SQL +             SGT+NL + H++ LSE L+ QILR  S
Sbjct: 1   MRHGRPFLVKEQCSASQLGDILLVASITKTLSSSGTRNLPDPHTLSLSEPLLLQILRAQS 60

Query: 111 IRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCRAG 1
           +  S K+DFFKW SL    KHS  TYS I     RAG
Sbjct: 61  LHPSKKVDFFKWCSLTHNIKHSARTYSHILRTASRAG 97


>gb|EXC13626.1| hypothetical protein L484_019583 [Morus notabilis]
          Length = 788

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 29/54 (53%), Positives = 36/54 (66%)
 Frame = -3

Query: 162 SIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCRAG 1
           SIPLSE ++ QILR NS+  S K+DFF W SL S  K S  +YS +  A+CR G
Sbjct: 46  SIPLSEPILLQILRNNSLHISKKLDFFTWFSLNSDLKPSAHSYSQVLRALCREG 99


>ref|XP_004308750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Fragaria vesca subsp. vesca]
          Length = 789

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 29/62 (46%), Positives = 37/62 (59%)
 Frame = -3

Query: 186 GTQNLNAHSIPLSESLVEQILRRNSIRASTKIDFFKWASLRSGFKHSPSTYSLIFEAVCR 7
           GT+NL    +PL+E L+ QILR  S+  S K+DFFKW SL      SP  +S +    CR
Sbjct: 36  GTRNL-PQPLPLTEPLLLQILRTQSLHPSKKLDFFKWCSLTHSIPPSPRAFSHVLHTACR 94

Query: 6   AG 1
           AG
Sbjct: 95  AG 96