BLASTX nr result

ID: Cocculus22_contig00030600 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00030600
         (273 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576371.1| NADH dehydrogenase subunit 3 (mitochondrion)...    60   4e-07
ref|NP_739612.1| NADH dehydrogenase subunit 3 [Thrips imaginis] ...    57   3e-06

>ref|YP_006576371.1| NADH dehydrogenase subunit 3 (mitochondrion) [Frankliniella
           occidentalis] gi|356461549|gb|AET08373.1| NADH
           dehydrogenase subunit 3 (mitochondrion) [Frankliniella
           occidentalis]
          Length = 115

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/55 (50%), Positives = 36/55 (65%)
 Frame = +1

Query: 109 ILFTSFTIALLLXXXXXXXXXXXXXXXEKWRPFECGFNFFNSARIPFSIRFFLIA 273
           ++ T FT++++L               EK  PFECGFNFFNSA++PFSIRFFLIA
Sbjct: 5   LVLTMFTLSMILIMIMSTFSKKSKNWREKMIPFECGFNFFNSAQMPFSIRFFLIA 59


>ref|NP_739612.1| NADH dehydrogenase subunit 3 [Thrips imaginis]
           gi|24762256|gb|AAK55289.2|AF335993_2 NADH dehydrogenase
           subunit 3 [Thrips imaginis]
          Length = 116

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/54 (50%), Positives = 33/54 (61%)
 Frame = +1

Query: 112 LFTSFTIALLLXXXXXXXXXXXXXXXEKWRPFECGFNFFNSARIPFSIRFFLIA 273
           + TS T+  +L               EK  PFECGFNFFNSAR+PFS++FFLIA
Sbjct: 7   ILTSLTVTFILMSMTTMISKKSQKSREKQIPFECGFNFFNSARMPFSMQFFLIA 60


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