BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00030200
         (377 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   160   2e-37
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no...   151   1e-34
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   143   2e-32
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   143   2e-32
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              142   5e-32
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]   142   5e-32
ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, par...   140   2e-31
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   140   2e-31
ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polyme...   124   7e-31
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   137   2e-30
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   137   2e-30
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   135   8e-30
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   135   8e-30
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   135   8e-30
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   130   2e-28
ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prun...   130   2e-28
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   129   3e-28
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   127   2e-27
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   126   3e-27
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   123   2e-26

>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
           sativus]
          Length = 1056

 Score =  160 bits (405), Expect = 2e-37
 Identities = 77/127 (60%), Positives = 99/127 (77%), Gaps = 6/127 (4%)
 Frame = -3

Query: 363 LQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGK 184
           +QY DWD  +T+IY CHVA +G+C FKGP L   KTHLQRVLGD+NVL V+FA+++++  
Sbjct: 254 VQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTP 313

Query: 183 LS------IVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNA 22
           LS         + KIAR+GI +GLRRY FFV+KDGGKEE+KKNPT+S+VK YFVRMES+A
Sbjct: 314 LSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDA 373

Query: 21  FIDRKSP 1
           +ID+  P
Sbjct: 374 YIDKIEP 380


>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
          Length = 529

 Score =  151 bits (381), Expect = 1e-34
 Identities = 76/128 (59%), Positives = 97/128 (75%), Gaps = 7/128 (5%)
 Frame = -3

Query: 372 KDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQA 193
           +DR  Y DWDSG+T+IY CHV+  G+  FKGP L+K K HLQ+VLGD+NVL V+FA+E+A
Sbjct: 179 EDRRIYHDWDSGKTHIYRCHVSPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEA 238

Query: 192 NGKLSI-------VGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRM 34
             + SI        G+ KI REGI VGLRRY FFV+KDGGKEE+KK+PTSS VK +F+R+
Sbjct: 239 E-RFSIGSRDHYYAGYSKICREGILVGLRRYCFFVFKDGGKEEKKKDPTSSPVKCFFIRI 297

Query: 33  ESNAFIDR 10
            S+A ID+
Sbjct: 298 HSDACIDQ 305


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
           gi|568843311|ref|XP_006475557.1| PREDICTED: probable
           RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
           sinensis] gi|557554498|gb|ESR64512.1| hypothetical
           protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  143 bits (361), Expect = 2e-32
 Identities = 70/126 (55%), Positives = 92/126 (73%), Gaps = 6/126 (4%)
 Frame = -3

Query: 372 KDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQA 193
           +DR     WDSG+T++Y CH+++ G C FKGP L + +THLQR LGD+N+L V+F +E  
Sbjct: 208 EDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELG 267

Query: 192 ------NGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRME 31
                 N   S   +++IAREGI VGLR Y FFV+KDGGKEE+KK+P++S VK YFVRME
Sbjct: 268 GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRME 327

Query: 30  SNAFID 13
           S+AFID
Sbjct: 328 SSAFID 333


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
           gi|568843309|ref|XP_006475556.1| PREDICTED: probable
           RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
           sinensis] gi|557554497|gb|ESR64511.1| hypothetical
           protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  143 bits (361), Expect = 2e-32
 Identities = 70/126 (55%), Positives = 92/126 (73%), Gaps = 6/126 (4%)
 Frame = -3

Query: 372 KDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQA 193
           +DR     WDSG+T++Y CH+++ G C FKGP L + +THLQR LGD+N+L V+F +E  
Sbjct: 210 EDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELG 269

Query: 192 ------NGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRME 31
                 N   S   +++IAREGI VGLR Y FFV+KDGGKEE+KK+P++S VK YFVRME
Sbjct: 270 GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRME 329

Query: 30  SNAFID 13
           S+AFID
Sbjct: 330 SSAFID 335


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  142 bits (358), Expect = 5e-32
 Identities = 74/124 (59%), Positives = 94/124 (75%), Gaps = 6/124 (4%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQ 196
           ++DR +  DWDS +T+IY CHV+ +G+  FKGP L K +THLQRVLGDEN+L V+FA++ 
Sbjct: 160 EEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDV 219

Query: 195 ANGKL------SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRM 34
            +         S   ++KIAREGI VGLR+YRFFV+KDGGKEE+KKNPT SSVK YFV M
Sbjct: 220 TDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT-SSVKCYFVFM 278

Query: 33  ESNA 22
           ES+A
Sbjct: 279 ESSA 282


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score =  142 bits (358), Expect = 5e-32
 Identities = 74/124 (59%), Positives = 94/124 (75%), Gaps = 6/124 (4%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQ 196
           ++DR +  DWDS +T+IY CHV+ +G+  FKGP L K +THLQRVLGDEN+L V+FA++ 
Sbjct: 523 EEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDV 582

Query: 195 ANGKL------SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRM 34
            +         S   ++KIAREGI VGLR+YRFFV+KDGGKEE+KKNPT SSVK YFV M
Sbjct: 583 TDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT-SSVKCYFVFM 641

Query: 33  ESNA 22
           ES+A
Sbjct: 642 ESSA 645


>ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
           vulgaris] gi|561026288|gb|ESW24973.1| hypothetical
           protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
          Length = 689

 Score =  140 bits (353), Expect = 2e-31
 Identities = 72/125 (57%), Positives = 92/125 (73%), Gaps = 6/125 (4%)
 Frame = -3

Query: 369 DRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADE--- 199
           DR  Y DWDSGRT++Y C+V+S+G+  FKGP LQ  +THLQR LGD+NVL V+FA+    
Sbjct: 170 DRQVYVDWDSGRTHVYQCYVSSDGSLRFKGPILQSTQTHLQRSLGDDNVLLVKFAENGIA 229

Query: 198 ---QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMES 28
              + + + +   + K  +EGI VGLR YRFFV+KDGGKEE+KK+PTSSSVK YFVRM+S
Sbjct: 230 NNIRTSAEEAYRLYGKFGKEGINVGLRLYRFFVFKDGGKEEKKKDPTSSSVKCYFVRMQS 289

Query: 27  NAFID 13
              ID
Sbjct: 290 CWSID 294


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
           arietinum]
          Length = 997

 Score =  140 bits (353), Expect = 2e-31
 Identities = 70/127 (55%), Positives = 91/127 (71%), Gaps = 6/127 (4%)
 Frame = -3

Query: 369 DRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQ-- 196
           DRL Y DWDSGRT+IY C V+ NG+  FKGP LQ  +THLQ+ LGD+NVL V+FA++Q  
Sbjct: 195 DRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTRTHLQKSLGDDNVLLVKFAEDQYA 254

Query: 195 ----ANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMES 28
                + + +   + K  +EG+ VGLR YRFFV+K GGKEE+KK+PT+SSVK YFVR ES
Sbjct: 255 RKSETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVGGKEEKKKDPTTSSVKCYFVRTES 314

Query: 27  NAFIDRK 7
           +   D +
Sbjct: 315 SCSTDER 321


>ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Cucumis
           sativus]
          Length = 560

 Score =  124 bits (311), Expect(2) = 7e-31
 Identities = 62/103 (60%), Positives = 79/103 (76%), Gaps = 6/103 (5%)
 Frame = -3

Query: 291 IFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGKLS------IVGFHKIAREGICVGL 130
           I  GP L   KTHLQRVLGD+NVL V+FA+++++  LS         + KIAR+GI +GL
Sbjct: 303 IHAGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGL 362

Query: 129 RRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRKSP 1
           RRY FFV+KDGGKEE+KKNPT+S+VK YFVRMES+A+ID+  P
Sbjct: 363 RRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEP 405



 Score = 35.4 bits (80), Expect(2) = 7e-31
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = -1

Query: 368 IDCSIKIGIQEEHTYTVVMLLQMELASSR 282
           I CS+ IGI  +HT+T VMLL M +A SR
Sbjct: 239 ISCSMLIGIVGKHTFTTVMLLWMGVAGSR 267


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
           gi|550334280|gb|ERP58267.1| hypothetical protein
           POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  137 bits (344), Expect = 2e-30
 Identities = 70/130 (53%), Positives = 95/130 (73%), Gaps = 7/130 (5%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA--- 205
           ++DR++Y DWDSG+T+IY CHV  +G+  FKGP L K +  LQR LGD+N+L V+F    
Sbjct: 77  EEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVK 136

Query: 204 DEQANGKLSIVGF----HKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVR 37
           D++ +G  S+  +    +K+  EGI VGLR YRFFV+KDGGKEE+KK+PT+S VK +FVR
Sbjct: 137 DDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVR 196

Query: 36  MESNAFIDRK 7
           MES A ID +
Sbjct: 197 MESVASIDNQ 206


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
           gi|550334279|gb|ERP58266.1| hypothetical protein
           POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  137 bits (344), Expect = 2e-30
 Identities = 70/130 (53%), Positives = 95/130 (73%), Gaps = 7/130 (5%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA--- 205
           ++DR++Y DWDSG+T+IY CHV  +G+  FKGP L K +  LQR LGD+N+L V+F    
Sbjct: 99  EEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVK 158

Query: 204 DEQANGKLSIVGF----HKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVR 37
           D++ +G  S+  +    +K+  EGI VGLR YRFFV+KDGGKEE+KK+PT+S VK +FVR
Sbjct: 159 DDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVR 218

Query: 36  MESNAFIDRK 7
           MES A ID +
Sbjct: 219 MESVASIDNQ 228


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
           gi|550336519|gb|ERP59562.1| hypothetical protein
           POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  135 bits (339), Expect = 8e-30
 Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 7/130 (5%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA--- 205
           ++DR++Y DWDSG+ +IY CHV  +G+  FKGP L KQ+  LQR LGD+N+L V+F    
Sbjct: 77  EEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILMVKFEEVK 136

Query: 204 DEQANGKLSI----VGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVR 37
           DE+ +   S+      ++K+ REGI VGLR YRFFV+KDGGKEE+KK+PT+S VK +FV 
Sbjct: 137 DERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVC 196

Query: 36  MESNAFIDRK 7
           MES A +D +
Sbjct: 197 MESVASVDNQ 206


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
           vesca subsp. vesca]
          Length = 1405

 Score =  135 bits (339), Expect = 8e-30
 Identities = 72/127 (56%), Positives = 92/127 (72%), Gaps = 6/127 (4%)
 Frame = -3

Query: 372 KDRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQK-QKTHLQRVLGDENVLDVRFADE- 199
           +DR  Y DWDSG T++Y C+V  +G+  FKGP L K ++T LQ+ LGD+NVL V+FA E 
Sbjct: 607 EDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLLQKELGDDNVLMVKFAKEE 666

Query: 198 ----QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRME 31
               Q+    +   + K+AREGI VGLRRYRFFV+KDGG EE+KKNPTSS VK YFVR+ 
Sbjct: 667 VQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNEEKKKNPTSSPVKCYFVRVA 726

Query: 30  SNAFIDR 10
           S+A ID+
Sbjct: 727 SDAAIDK 733


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  135 bits (339), Expect = 8e-30
 Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 14/132 (10%)
 Frame = -3

Query: 375 DKDRLQYQDWDSGRTYIYCCHVASNGTCIFK--------GPTLQKQKTHLQRVLGDENVL 220
           ++DR +  DWDS +T+IY CHV+ +G+  FK        GP L K +THLQRVLGDEN+L
Sbjct: 160 EEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENIL 219

Query: 219 DVRFADEQANGKL------SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSS 58
            V+FA++  +         S   ++KIAREGI VGLR+YRFFV+KDGGKEE+KKNPT SS
Sbjct: 220 LVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT-SS 278

Query: 57  VKSYFVRMESNA 22
           VK YFV MES+A
Sbjct: 279 VKCYFVFMESSA 290


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 988

 Score =  130 bits (326), Expect = 2e-28
 Identities = 64/125 (51%), Positives = 88/125 (70%), Gaps = 6/125 (4%)
 Frame = -3

Query: 369 DRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADE--- 199
           DR  ++DW+SGRT++Y C V  +G   FKGP LQ  +THLQ+ LGD+NVL V+FA++   
Sbjct: 184 DRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSG 243

Query: 198 ---QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMES 28
              + + + +   + K  +EGI VGLR YRFFV+KDGG EE++K+PTSS+VK YFVRM+S
Sbjct: 244 KNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQS 303

Query: 27  NAFID 13
               D
Sbjct: 304 GCSAD 308


>ref|XP_007204275.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
           gi|462399806|gb|EMJ05474.1| hypothetical protein
           PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  130 bits (326), Expect = 2e-28
 Identities = 68/121 (56%), Positives = 86/121 (71%), Gaps = 7/121 (5%)
 Frame = -3

Query: 351 DWDSGRTYIYCCHVASNGTCIFKGPTLQKQK-THLQRVLGDENVLDVRFAD------EQA 193
           DWDSG+TY+Y C V+ +G+  FKGP L   K T LQ+VLGD+NVL V+F+D        A
Sbjct: 25  DWDSGKTYVYHCEVSVDGSYKFKGPCLNNTKRTLLQKVLGDDNVLMVKFSDVVTERVPTA 84

Query: 192 NGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFID 13
               +   + K+AREGI VGLRRY+FFV+KDGG +E+KKNPTSS VK YF+ + SNA ID
Sbjct: 85  IKDNNYANYSKVAREGILVGLRRYQFFVFKDGGNKEKKKNPTSSPVKCYFICVGSNAAID 144

Query: 12  R 10
           R
Sbjct: 145 R 145


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
           RNA polymerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 981

 Score =  129 bits (325), Expect = 3e-28
 Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 4/127 (3%)
 Frame = -3

Query: 369 DRLQYQDWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQAN 190
           DR   Q WDSG+T+ Y CHVA +G+  FKGP L+   THL +VLGDENVL V+FAD   N
Sbjct: 201 DRRMLQ-WDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVPKN 259

Query: 189 GKL----SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNA 22
                      + +IA+ GI +GLRRY+FFV+KDGGKEE+KK+ ++  VK YF+R +S A
Sbjct: 260 SSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA 319

Query: 21  FIDRKSP 1
             D ++P
Sbjct: 320 SCDMENP 326


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
           gi|482565615|gb|EOA29804.1| hypothetical protein
           CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  127 bits (319), Expect = 2e-27
 Identities = 61/120 (50%), Positives = 82/120 (68%), Gaps = 4/120 (3%)
 Frame = -3

Query: 348 WDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGKL---- 181
           WDSG+T+ Y CHVA +G+  FKGP L+   THL +VLGDENVL V+FA+ Q N       
Sbjct: 211 WDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTYCSD 270

Query: 180 SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRKSP 1
           S   +  IA+ GI VGLRRY+FFV+KDGGK+++ K+ ++   K YF+R +S A ID + P
Sbjct: 271 SYFTYKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTKRAKCYFIRTDSTASIDMEKP 330


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
           gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 5;
           Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
           5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
           polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  126 bits (317), Expect = 3e-27
 Identities = 66/134 (49%), Positives = 89/134 (66%), Gaps = 10/134 (7%)
 Frame = -3

Query: 372 KDRLQYQDWDSGRTYIYCCHVASNGTCIFK------GPTLQKQKTHLQRVLGDENVLDVR 211
           KDR   Q WDSG+T+ Y C+VA NG+  FK      GP L+   THL +VLGD+NVL V+
Sbjct: 190 KDRRMLQ-WDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVK 248

Query: 210 FADEQANGKLSIVG----FHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYF 43
           FAD Q +     +     +  IA+ GI +GLRRY+FFV+KDGGKEE+KK+ ++  VK YF
Sbjct: 249 FADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYF 308

Query: 42  VRMESNAFIDRKSP 1
           +R +S AF D ++P
Sbjct: 309 IRTDSTAFYDMQNP 322


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
           gi|548857326|gb|ERN15132.1| hypothetical protein
           AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  123 bits (309), Expect = 2e-26
 Identities = 63/124 (50%), Positives = 85/124 (68%), Gaps = 7/124 (5%)
 Frame = -3

Query: 351 DWDSGRTYIYCCHVASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQAN---GKL 181
           DWDSG+   Y CHV   G   FKGP L+  +THL+RVLGD+ VL V+FA+E  +   G+ 
Sbjct: 193 DWDSGKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEMVDERRGEF 252

Query: 180 SIVG----FHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFID 13
           ++      F +IA++GI VGLRRY FFV+KDGGKEE++KN  ++ VK YFV M+S+A  D
Sbjct: 253 NLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVCMKSDAESD 312

Query: 12  RKSP 1
             +P
Sbjct: 313 MHTP 316