BLASTX nr result
ID: Cocculus22_contig00029979
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00029979
(380 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006488968.1| PREDICTED: pentatricopeptide repeat-containi... 95 9e-18
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi... 92 6e-17
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] 92 6e-17
ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|XP_007014654.1| Pentatricopeptide repeat (PPR) superfamily p... 84 3e-14
gb|EXB88915.1| hypothetical protein L484_003611 [Morus notabilis] 76 4e-12
ref|XP_007208240.1| hypothetical protein PRUPE_ppa016950mg, part... 73 4e-11
ref|XP_002303975.2| pentatricopeptide repeat-containing family p... 73 5e-11
ref|XP_006445545.1| hypothetical protein CICLE_v10014960mg [Citr... 72 1e-10
ref|XP_002523384.1| pentatricopeptide repeat-containing protein,... 70 3e-10
ref|XP_006361475.1| PREDICTED: putative pentatricopeptide repeat... 68 1e-09
gb|EXC24885.1| hypothetical protein L484_013254 [Morus notabilis] 68 2e-09
ref|XP_003556973.2| PREDICTED: pentatricopeptide repeat-containi... 66 6e-09
gb|EXB54324.1| hypothetical protein L484_006484 [Morus notabilis] 65 1e-08
ref|XP_004294930.1| PREDICTED: pentatricopeptide repeat-containi... 65 1e-08
gb|EXB54618.1| hypothetical protein L484_019190 [Morus notabilis] 64 2e-08
ref|XP_006344590.1| PREDICTED: pentatricopeptide repeat-containi... 64 3e-08
ref|XP_006430120.1| hypothetical protein CICLE_v10011370mg [Citr... 63 5e-08
ref|XP_004228988.1| PREDICTED: pentatricopeptide repeat-containi... 63 5e-08
ref|XP_006358733.1| PREDICTED: pentatricopeptide repeat-containi... 62 6e-08
>ref|XP_006488968.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like isoform X1 [Citrus sinensis]
gi|568871598|ref|XP_006488969.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g56310-like isoform X2 [Citrus sinensis]
Length = 564
Score = 95.1 bits (235), Expect = 9e-18
Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Frame = -1
Query: 281 ILKQKLHIFVDPTDFVSLLSQC--ANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILG 108
I+ ++L D V+LLSQC A+ KH+ HG+M+ RGLD+ N+LLS+FI++CS LG
Sbjct: 22 IIHKRLICCTSAADLVTLLSQCKCADIKHLFAAHGFMIVRGLDQNNHLLSRFIDSCSSLG 81
Query: 107 FINYGYSVFARKIDPDIFLYNTMIKGFSQTSS 12
F +Y YS+F K PD++LYNT IK QT +
Sbjct: 82 FSDYAYSIFTHKSKPDVYLYNTTIKALCQTDN 113
>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 92.4 bits (228), Expect = 6e-17
Identities = 42/78 (53%), Positives = 56/78 (71%)
Frame = -1
Query: 236 VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDI 57
+SLL QC+N KH++Q H +M+ RGLD+ N LLS+FIE CS LGF +Y +S+F K PDI
Sbjct: 45 LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDI 104
Query: 56 FLYNTMIKGFSQTSSAED 3
+LYNT+IK S A +
Sbjct: 105 YLYNTIIKALSNPELATE 122
>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 92.4 bits (228), Expect = 6e-17
Identities = 42/78 (53%), Positives = 56/78 (71%)
Frame = -1
Query: 236 VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDI 57
+SLL QC+N KH++Q H +M+ RGLD+ N LLS+FIE CS LGF +Y +S+F K PDI
Sbjct: 45 LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDI 104
Query: 56 FLYNTMIKGFSQTSSAED 3
+LYNT+IK S A +
Sbjct: 105 YLYNTIIKALSNPELATE 122
>ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 88.2 bits (217), Expect = 1e-15
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = -1
Query: 260 IFVDPTDFVSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVF 81
IF F SLLS C + H+ QIHG+M+ R LD+ N LS+FI+ C+ LG +Y +S+F
Sbjct: 20 IFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIF 79
Query: 80 ARKIDPDIFLYNTMIKGFSQTSS 12
+ K PD+ LYNT IK S+TSS
Sbjct: 80 SNKTHPDLRLYNTAIKALSKTSS 102
>ref|XP_007014654.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
isoform 1 [Theobroma cacao]
gi|590582550|ref|XP_007014655.1| Pentatricopeptide
repeat (PPR) superfamily protein, putative isoform 1
[Theobroma cacao] gi|508785017|gb|EOY32273.1|
Pentatricopeptide repeat (PPR) superfamily protein,
putative isoform 1 [Theobroma cacao]
gi|508785018|gb|EOY32274.1| Pentatricopeptide repeat
(PPR) superfamily protein, putative isoform 1 [Theobroma
cacao]
Length = 540
Score = 83.6 bits (205), Expect = 3e-14
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = -1
Query: 230 LLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFL 51
LL +C+N KH+ Q HG+MV LD LLS+FIE CS LGF Y YSVFA + P I++
Sbjct: 9 LLKRCSNLKHVEQAHGFMVRTALDHDEILLSQFIEACSSLGFPGYAYSVFAFNLQPRIYV 68
Query: 50 YNTMIKGFSQTSSA 9
+NTMIK + + SA
Sbjct: 69 FNTMIKALTLSHSA 82
>gb|EXB88915.1| hypothetical protein L484_003611 [Morus notabilis]
Length = 524
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = -1
Query: 245 TDFVSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFA-RKI 69
+D VSLL QC++FKHI Q HG ++PRGL N +L+ FI++CS LG+ +Y Y VF
Sbjct: 4 SDVVSLLKQCSSFKHIRQTHGVLIPRGLRNDNLILAHFIQSCSSLGYSSYAYLVFTHHNK 63
Query: 68 DPDIFLYNTMIKGFSQTSS 12
+I+L+NTMI S + +
Sbjct: 64 RHNIYLFNTMINVVSPSEA 82
>ref|XP_007208240.1| hypothetical protein PRUPE_ppa016950mg, partial [Prunus persica]
gi|462403882|gb|EMJ09439.1| hypothetical protein
PRUPE_ppa016950mg, partial [Prunus persica]
Length = 532
Score = 73.2 bits (178), Expect = 4e-11
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = -1
Query: 227 LSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKI-DPDIFL 51
L QC+N KHI Q HG+MV GL + N L + I+ CS LGF +Y YSVF R P I+L
Sbjct: 3 LRQCSNLKHIEQAHGFMVAGGLHQDNRTLPRLIQACSSLGFSDYAYSVFTRTHGQPSIYL 62
Query: 50 YNTMIK 33
YNT+IK
Sbjct: 63 YNTIIK 68
>ref|XP_002303975.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550343649|gb|EEE78954.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 543
Score = 72.8 bits (177), Expect = 5e-11
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 236 VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKID-PD 60
+SL++ ++ KHI+Q H +M+ R LD N LLS+FI CS LGF +Y YS+F PD
Sbjct: 17 ISLIAHSSHLKHIHQTHAFMLLRALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPD 76
Query: 59 IFLYNTMIKGFSQT 18
I+LYN +IK S +
Sbjct: 77 IYLYNNIIKALSSS 90
>ref|XP_006445545.1| hypothetical protein CICLE_v10014960mg [Citrus clementina]
gi|557548156|gb|ESR58785.1| hypothetical protein
CICLE_v10014960mg [Citrus clementina]
Length = 510
Score = 71.6 bits (174), Expect = 1e-10
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -1
Query: 179 MVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFLYNTMIKGFSQTSS 12
M+ RGLD+ N+LLS+FI++CS LGF +Y YS+F K PD++LYNT IK QT +
Sbjct: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDN 56
>ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537334|gb|EEF38963.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 538
Score = 70.1 bits (170), Expect = 3e-10
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = -1
Query: 230 LLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKI-DPDIF 54
LL+ C+N KH++Q H +M+ R LD N LLS FI++ S LGF Y YS+F P+IF
Sbjct: 17 LLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSLYAYSLFTSLTHPPNIF 76
Query: 53 LYNTMIKGFS 24
LYNT+I+ S
Sbjct: 77 LYNTIIRALS 86
>ref|XP_006361475.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Solanum tuberosum]
Length = 563
Score = 68.2 bits (165), Expect = 1e-09
Identities = 29/89 (32%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Frame = -1
Query: 260 IFVDPTDF--VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGF-INYGY 90
I +P+ F ++LL + KH+ Q+H +++ +G ++ ++++++FI C++ + I+Y
Sbjct: 8 IRTEPSSFTVLNLLRESRGIKHLEQVHTHIIQKGYEQDHFIINQFISLCNVFSYDISYAT 67
Query: 89 SVFARKIDPDIFLYNTMIKGFSQTSSAED 3
SVF I P+++++NT+IKG+S+ SS D
Sbjct: 68 SVFEHVIQPNVYVWNTLIKGYSKKSSLVD 96
>gb|EXC24885.1| hypothetical protein L484_013254 [Morus notabilis]
Length = 615
Score = 67.8 bits (164), Expect = 2e-09
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 245 TDFVSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYS--VFARK 72
+DF LL+ C +FK I Q+H ++ RGLD+C YLL+K + T S LG YS VF R
Sbjct: 6 SDFNFLLNGCTSFKQIKQVHAQLLHRGLDQCCYLLAKLVRTLSKLGVPMDAYSRPVFERV 65
Query: 71 IDPDIFLYNTMIKGFS 24
P+ FL+ MI+G+S
Sbjct: 66 TSPNPFLWTAMIRGYS 81
>ref|XP_003556973.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 580
Score = 65.9 bits (159), Expect = 6e-09
Identities = 31/72 (43%), Positives = 43/72 (59%)
Frame = -1
Query: 230 LLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFL 51
LL C N H+ Q G+M+ RGLD+ + LL++FI T + LG +Y YSVF P IF
Sbjct: 67 LLCHCTNLSHLQQTQGFMLTRGLDQDDILLARFIYTSASLGLSSYAYSVFISNHRPSIFF 126
Query: 50 YNTMIKGFSQTS 15
YN +I S ++
Sbjct: 127 YNNVIWALSSSN 138
>gb|EXB54324.1| hypothetical protein L484_006484 [Morus notabilis]
Length = 523
Score = 64.7 bits (156), Expect = 1e-08
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = -1
Query: 236 VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDI 57
+SL C+ K + QIH ++ G D+ ++L+K +E CS+ G ++Y SVF R + D
Sbjct: 59 MSLFKFCSTMKDLKQIHARIIQLGFDQDLFVLAKMVEFCSVQGDMDYSVSVFDRIENSDG 118
Query: 56 FLYNTMIKGFSQTS 15
FL+NTMI+GF +T+
Sbjct: 119 FLWNTMIRGFGKTN 132
>ref|XP_004294930.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Fragaria vesca subsp. vesca]
Length = 518
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/66 (51%), Positives = 41/66 (62%)
Frame = -1
Query: 230 LLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFL 51
L+ C + KHI Q HG MV GL+ ++FIE CS LGF +Y SVF R P+I L
Sbjct: 7 LVRGCYSLKHIQQAHGLMVTLGLEE-----ARFIEACSSLGFSSYACSVFTRNPQPNINL 61
Query: 50 YNTMIK 33
YNTMIK
Sbjct: 62 YNTMIK 67
>gb|EXB54618.1| hypothetical protein L484_019190 [Morus notabilis]
Length = 553
Score = 64.3 bits (155), Expect = 2e-08
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = -1
Query: 233 SLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIF 54
SL+ C N KH+ Q+H ++ +GL++ ++L+S+FI L ++Y SVF R + P F
Sbjct: 18 SLIKACRNPKHLQQVHAQIIRKGLEQDHFLISQFICLSQTLSNLSYSVSVFDRILSPSTF 77
Query: 53 LYNTMIKGFSQTS 15
L+N +IKG+ + S
Sbjct: 78 LWNVLIKGYCEKS 90
>ref|XP_006344590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like isoform X1 [Solanum tuberosum]
gi|565355429|ref|XP_006344591.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g56310-like isoform X2 [Solanum tuberosum]
Length = 508
Score = 63.5 bits (153), Expect = 3e-08
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = -1
Query: 179 MVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFLYNTMIKGFSQ 21
MV R LD N++LS+F TCS +GF++Y YS+F +P+I+LYNT+I FS+
Sbjct: 1 MVHRALDEDNFILSQFFHTCSAVGFVSYAYSIFTSNPNPNIYLYNTLISIFSR 53
>ref|XP_006430120.1| hypothetical protein CICLE_v10011370mg [Citrus clementina]
gi|557532177|gb|ESR43360.1| hypothetical protein
CICLE_v10011370mg [Citrus clementina]
Length = 574
Score = 62.8 bits (151), Expect = 5e-08
Identities = 27/75 (36%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = -1
Query: 236 VSLLSQCANFKHINQIHGYMVPRGLDRCNYLLSKFIETCSILGF-INYGYSVFARKIDPD 60
++L+ +C H++Q+H +++ +GLD+ + L++ FI C L ++Y +VF R ++P+
Sbjct: 41 LTLIKKCKLQTHLHQVHSHIIKKGLDQDHSLVAHFISLCHSLATPLSYSSAVFNRIVNPN 100
Query: 59 IFLYNTMIKGFSQTS 15
FL+NT++KG+SQ S
Sbjct: 101 TFLWNTLLKGYSQNS 115
>ref|XP_004228988.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Solanum lycopersicum]
Length = 508
Score = 62.8 bits (151), Expect = 5e-08
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = -1
Query: 179 MVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFLYNTMIKGFSQ 21
M+ R LD N++LS+FI CS LGF++Y YS+F +P+I+LYNT+I FS+
Sbjct: 1 MLHRALDEDNFILSQFIHKCSALGFVSYAYSIFTSNPNPNIYLYNTLISIFSR 53
>ref|XP_006358733.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like isoform X1 [Solanum tuberosum]
gi|565385767|ref|XP_006358734.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g56310-like isoform X2 [Solanum tuberosum]
Length = 508
Score = 62.4 bits (150), Expect = 6e-08
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = -1
Query: 179 MVPRGLDRCNYLLSKFIETCSILGFINYGYSVFARKIDPDIFLYNTMIKGFSQ 21
MV R LD+ N++LS+F TCS LGF++Y YS+ +P+I+LYNT+I FS+
Sbjct: 1 MVHRALDQDNFILSQFFHTCSALGFVSYAYSIVTSNPNPNIYLYNTLISIFSR 53