BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00029977
         (321 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB72467.1| putative protein [Arabidopsis thaliana]                96   4e-18
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    91   1e-16
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                89   6e-16
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]                          86   4e-15
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    86   7e-15
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    84   2e-14
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    84   2e-14
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    84   2e-14
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    84   3e-14
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        83   3e-14
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    83   3e-14
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    83   3e-14
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    83   3e-14
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    80   3e-13
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    79   6e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    77   2e-12
ref|XP_007015140.1| Ribonuclease H protein, putative [Theobroma ...    77   2e-12
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A...    77   2e-12
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 77   2e-12
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            77   3e-12

>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
 Frame = +3

Query: 6   NFKSKLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYL 185
           N  SK   +SW+  CKP  EGGLGL+  KE +    +KL W IIS  ++LWVKWV    L
Sbjct: 405 NLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLL 464

Query: 186 KFDTFWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
           K + FW    + +  SWIWKK+ + R + +R  +  +GNG S+  W
Sbjct: 465 KREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFW 510


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
 Frame = +3

Query: 15   SKLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFD 194
            S    +SW   CKP +EGGLGL+  KE +    +KL W I+S  N+LWVKWV    L+  
Sbjct: 855  SNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNA 914

Query: 195  TFWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
            +FW     VS  SWIWKKL + R + +   +  +GNG+ +  W
Sbjct: 915  SFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFW 957


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           +SWD  CKP  EGGLGL+  KE +    +KL W IIS+ N+LW KWV    ++  + WS 
Sbjct: 507 ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL 566

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
               S  SWIW+K+ ++R + +   +  +GNG S+  W
Sbjct: 567 KQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFW 604


>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
          Length = 382

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           +SW   CKP +EGGLGL+  KE++    +KL W ++S  N+LWV+W+    LK DTFWS 
Sbjct: 277 LSWVDVCKPKQEGGLGLRPLKEINDVCCLKLIWRLVSHANSLWVQWIEKYLLKADTFWSV 336

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
               +  SW+W KL + R + +   +  + NG  +  W
Sbjct: 337 KATTNRGSWMWSKLIKYRDVAKEFCKVEVRNGHRTSFW 374


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           ++W   CKP +EGGLGL+  KE +    +KL W IIS  ++LWVKW+H T LK  +FW+ 
Sbjct: 242 IAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAV 301

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
             + S  SW+WKK+ + R    +  +  + NG  +  W
Sbjct: 302 RENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFW 339


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           VSWD  CKP +EGGLGL+   E ++  V+KL W + S+ ++LWVKW     LK ++FWS 
Sbjct: 265 VSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
             + S  SW+WKK+ + R   +   +  + NG  +  W
Sbjct: 325 TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFW 362


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 37/97 (38%), Positives = 57/97 (58%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           ++W++ C+P  EGGLGL+  KE +    +KL W I+S  ++LWV+W+    LK +TFWS 
Sbjct: 378 IAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSF 437

Query: 210 NVDVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
                 SW+WKKL + R   +   +  I NG ++  W
Sbjct: 438 RSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFW 474


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           ++W   CKP EEGGLGL+  KE +    +KL W IIS  ++LWVKW+  + LK  +FW+ 
Sbjct: 109 ITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAV 168

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
             + S  SW+W+K+ + R I     +  I NG  +  W
Sbjct: 169 RENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFW 206


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30   VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
            VSWD  CKP +EGGLGL+  KE +    +K+ W I+S  N+LWVKW+    LK +TFW  
Sbjct: 817  VSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFV 876

Query: 210  NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
              + +  SW+W+KL + R   +   +  +  G  +  W
Sbjct: 877  KENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFW 914


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 37/103 (35%), Positives = 59/103 (57%)
 Frame = +3

Query: 12   KSKLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKF 191
            ++K + VSW + C P  EGGLGL+R  E +  + M+L W +   K++LW  W H  +L  
Sbjct: 847  QAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSR 906

Query: 192  DTFWSCNVDVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
             +FW+     S+SW WK+L  +RP+  + +   +GNG  +  W
Sbjct: 907  GSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYW 949


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           ++W   CKP EEGGLGL+  KE +    +KL W IIS  ++LWVKW+  + LK   FW+ 
Sbjct: 190 IAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAV 249

Query: 210 NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
             + S  SW+W+K+ + R I     +  I NG  +  W
Sbjct: 250 RENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFW 287


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +3

Query: 18  KLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDT 197
           K   VSWD  CKP +EGGLGL+  +E +    +KL W ++S +++LWVKW     LK ++
Sbjct: 577 KKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKES 636

Query: 198 FWSCNV-DVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
           FWS        SWIW++L + R + +   +  + NG ++  W
Sbjct: 637 FWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFW 678


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 34/99 (34%), Positives = 57/99 (57%)
 Frame = +3

Query: 24   VPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFW 203
            + VSW +SC P  EGGLGL+     +  + ++L W + + +++LWV W H   L+   FW
Sbjct: 850  IKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFW 909

Query: 204  SCNVDVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
            +      +SWIWK +  +RP+ +R ++  +GNG+    W
Sbjct: 910  NAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYW 948


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = +3

Query: 18   KLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDT 197
            K   ++W S C+P +EGGLG+K   E +    +KL W ++S + +LWV W+    ++  T
Sbjct: 1153 KKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGT 1212

Query: 198  FWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
            FWS N   S  SW+WKKL + R + +   +  + NG S+  W
Sbjct: 1213 FWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFW 1254


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +3

Query: 30   VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
            VSWD  CKP ++GGLGL+   E ++  V+KL W + S+ ++LWVKW     LK ++FWS 
Sbjct: 777  VSWDDICKP-KQGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 835

Query: 210  NVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
              + S  SW+WKK+ + R   +   +  + NG  +  W
Sbjct: 836  KPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFW 873


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +3

Query: 6    NFKSKLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYL 185
            +  +K   ++W   CK  EEGGLGLK  KE +   ++KL W I+S +++LWVKWV+   +
Sbjct: 999  DLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLI 1058

Query: 186  KFDTFWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
            + +TFWS   +    SW+W+K+ + R       +  + +G  +  W
Sbjct: 1059 RKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFW 1104


>ref|XP_007015140.1| Ribonuclease H protein, putative [Theobroma cacao]
           gi|508785503|gb|EOY32759.1| Ribonuclease H protein,
           putative [Theobroma cacao]
          Length = 337

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 33/97 (34%), Positives = 59/97 (60%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           VSW+  C P EEGGL L+  + ++LA++ KL W ++ D N+LWV  +   YL+ D   + 
Sbjct: 19  VSWEKLCSPKEEGGLQLRNLRFLNLALLGKLGWRLLMDTNHLWVDMLQKKYLRDDNLMTV 78

Query: 210 NVDVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
               S+S +W+ + + R I+E+ +  ++ NG +++ W
Sbjct: 79  TAKSSDSHVWRSILKARYILEKGLGKVVTNGIATRFW 115


>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 265

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 31/97 (31%), Positives = 54/97 (55%)
 Frame = +3

Query: 30  VSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDTFWSC 209
           V+WD  C P++EGGL ++     ++A  +K+ W ++    +LWV WV    LK  + W  
Sbjct: 130 VAWDEVCLPFDEGGLVIRDRSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLWEI 189

Query: 210 NVDVSNSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
           +V V  SW ++ +   R I+E  +   +GNG+  ++W
Sbjct: 190 DVGVGRSWCFRAILRKREILEAHVNIEVGNGKKCRVW 226


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = +3

Query: 18  KLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFDT 197
           K   ++W S CK  +EGGLG+K   E +    +KL W ++S +++LWV WV    ++  +
Sbjct: 429 KKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGS 488

Query: 198 FWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
           FWS N   S  SW+WKKL + R + +   +  I +G S+  W
Sbjct: 489 FWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFW 530


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 15  SKLVPVSWDSSCKPYEEGGLGLKRCKEVSLAVVMKLAWWIISDKNNLWVKWVHGTYLKFD 194
           +K   V+W   C P +EGGLG++  KE +   ++KL W ++S   +LWV+W+    L+  
Sbjct: 111 TKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKG 169

Query: 195 TFWSCNVDVS-NSWIWKKLGEVRPIMERCIQHLIGNGRSSKIW 320
           +FWS + + +  SW+WKK+ + R +    ++H I NG ++  W
Sbjct: 170 SFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFW 212