BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00029963
         (577 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...    84   3e-14
ref|XP_002525148.1| pentatricopeptide repeat-containing protein,...    81   2e-13
gb|EXB79007.1| hypothetical protein L484_001451 [Morus notabilis]      78   2e-12
ref|XP_007214673.1| hypothetical protein PRUPE_ppa021626mg [Prun...    77   3e-12
ref|XP_006469053.1| PREDICTED: pentatricopeptide repeat-containi...    72   1e-10
ref|XP_006446741.1| hypothetical protein CICLE_v10017507mg [Citr...    72   1e-10
gb|EPS66163.1| hypothetical protein M569_08615, partial [Genlise...    68   2e-09
gb|EYU44128.1| hypothetical protein MIMGU_mgv1a018635mg [Mimulus...    66   8e-09
ref|XP_006376410.1| pentatricopeptide repeat-containing family p...    66   8e-09
ref|XP_006417939.1| hypothetical protein EUTSA_v10008110mg [Eutr...    64   4e-08
ref|XP_007019848.1| Pentatricopeptide repeat-containing protein ...    63   6e-08
ref|XP_004229701.1| PREDICTED: pentatricopeptide repeat-containi...    63   6e-08
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...    62   8e-08
gb|EYU41276.1| hypothetical protein MIMGU_mgv1a021200mg [Mimulus...    62   1e-07
ref|XP_006354624.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
ref|XP_006354630.1| PREDICTED: pentatricopeptide repeat-containi...    61   2e-07
ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...    61   2e-07
ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...    60   3e-07
gb|EYU28936.1| hypothetical protein MIMGU_mgv1a023791mg, partial...    60   4e-07
ref|XP_006305261.1| hypothetical protein CARUB_v10009635mg [Caps...    60   5e-07

>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
 Frame = -2

Query: 318 HCKSHVLLRFYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFS 151
           H     +   +S  SSQ+LE+ SIK+A+E+KTY +I                FSFLSTFS
Sbjct: 16  HYSLRQISSIHSITSSQTLEE-SIKAAVESKTYQKIPDLLISLEETCLNPNPFSFLSTFS 74

Query: 150 QSQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           Q+ RTQ++DEILQSFIPLRPRSR + ++ CLL+ T Q+
Sbjct: 75  QNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQS 112


>ref|XP_002525148.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535607|gb|EEF37275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 354

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
 Frame = -2

Query: 312 KSHVLLRFYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP-----FSFLSTFSQ 148
           K H +   +S C S S  ++SIK+AIET++Y +I                 FSFLSTF  
Sbjct: 27  KLHQIAFNFSLCRSISSLERSIKAAIETESYQEIPDLLISSKIQSLHNPNPFSFLSTFPL 86

Query: 147 SQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           +QRT IID+ILQSFI +RP SRLK  + CLL+HT Q+
Sbjct: 87  NQRTHIIDKILQSFITIRPHSRLKLVYSCLLSHTLQS 123


>gb|EXB79007.1| hypothetical protein L484_001451 [Morus notabilis]
          Length = 344

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
 Frame = -2

Query: 309 SHVLLRFYSTCSSQSLE--QQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQ 148
           S+ + R+ S  S  SL   Q++IK A+E K+Y +I                FSFLSTF Q
Sbjct: 16  SYGVFRYRSMNSGSSLPMLQENIKDAVEAKSYQKIPDLLTSFEQARQNPNPFSFLSTFPQ 75

Query: 147 SQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQ 40
             RTQIIDEILQSF+PLRPRSR + ++ CLL++T Q
Sbjct: 76  VLRTQIIDEILQSFLPLRPRSRPQIAYSCLLSYTLQ 111


>ref|XP_007214673.1| hypothetical protein PRUPE_ppa021626mg [Prunus persica]
           gi|462410538|gb|EMJ15872.1| hypothetical protein
           PRUPE_ppa021626mg [Prunus persica]
          Length = 343

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
 Frame = -2

Query: 318 HCKSHVLLRFYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFS 151
           HC+       YS  SSQ L Q++IK+A+E KTY +I                FSFLS+F 
Sbjct: 16  HCRLLQYCSIYSISSSQML-QETIKNAVEAKTYQKIPDLLKSSAQACQNPNPFSFLSSFP 74

Query: 150 QSQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQ 40
            + RTQ++DEILQSFIPLRPRSR + ++  LL+ T Q
Sbjct: 75  HNLRTQVVDEILQSFIPLRPRSRGQIAYSYLLSFTLQ 111


>ref|XP_006469053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Citrus sinensis]
          Length = 343

 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
 Frame = -2

Query: 321 KHCKSHV-----LLRFYSTCSSQSLE--QQSIKSAIETKTYHQIXXXXXXXXXXXP---- 175
           K C+S V     LL+F S  S  SL   ++++++A++ K Y QI                
Sbjct: 7   KSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP 66

Query: 174 FSFLSTFSQSQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           FSFLS F Q+ R ++IDE+L+SFIPLRPRSR K ++D LL++T Q+
Sbjct: 67  FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS 112


>ref|XP_006446741.1| hypothetical protein CICLE_v10017507mg [Citrus clementina]
           gi|557549352|gb|ESR59981.1| hypothetical protein
           CICLE_v10017507mg [Citrus clementina]
          Length = 343

 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
 Frame = -2

Query: 321 KHCKSHV-----LLRFYSTCSSQSLE--QQSIKSAIETKTYHQIXXXXXXXXXXXP---- 175
           K C+S V     LL+F S  S  SL   ++++++A++ K Y QI                
Sbjct: 7   KSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP 66

Query: 174 FSFLSTFSQSQRTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           FSFLS F Q+ R ++IDE+L+SFIPLRPRSR K ++D LL++T Q+
Sbjct: 67  FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS 112


>gb|EPS66163.1| hypothetical protein M569_08615, partial [Genlisea aurea]
          Length = 307

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
 Frame = -2

Query: 291 FYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP-----FSFLSTFSQSQRTQII 127
           F    S   +  ++++SA+E+K Y++I                 FSFLS+ S++ + Q+I
Sbjct: 5   FNQISSEGGITAETLRSAVESKAYYRIPEILLDSSNLSSASPNPFSFLSSLSEAHQIQVI 64

Query: 126 DEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           DEILQ FIP+RPRSR   ++ CLL HT +N
Sbjct: 65  DEILQYFIPIRPRSRPVMAYSCLLYHTLEN 94


>gb|EYU44128.1| hypothetical protein MIMGU_mgv1a018635mg [Mimulus guttatus]
          Length = 336

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
 Frame = -2

Query: 288 YSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP---FSFLSTFSQSQRTQIIDEI 118
           YS+ SSQ   Q+SI SAIE+KTYH+I               FS LST S   ++ +IDEI
Sbjct: 22  YSSSSSQESLQESILSAIESKTYHKIPDLLLNNSSSRNPNPFSSLSTLSPIHKSLVIDEI 81

Query: 117 LQSFIPLRPRSRLKTSFDCLLAH 49
           LQSFI +RPRSR  +++  LL++
Sbjct: 82  LQSFISIRPRSRPNSAYSHLLSY 104


>ref|XP_006376410.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550325686|gb|ERP54207.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 341

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
 Frame = -2

Query: 309 SHVLLRFYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQ 142
           S +LL+F +  +S +  ++++K+A+E K+Y +                 FSFLSTF  + 
Sbjct: 16  SKILLQFRTLSTSHTPLEETLKAAVECKSYSKFPDLFDSFKQSNNIPSPFSFLSTFPFNL 75

Query: 141 RTQIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           RTQ+IDEI+QS IP+RPR R    +  LL++T QN
Sbjct: 76  RTQVIDEIIQSLIPIRPRFRNFIVYSSLLSYTLQN 110


>ref|XP_006417939.1| hypothetical protein EUTSA_v10008110mg [Eutrema salsugineum]
           gi|557095710|gb|ESQ36292.1| hypothetical protein
           EUTSA_v10008110mg [Eutrema salsugineum]
          Length = 343

 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
 Frame = -2

Query: 291 FYSTCSSQSLEQQSIKSAIETKTY----HQIXXXXXXXXXXXPFSFLSTFSQSQRTQIID 124
           F+ + SS    +++IK A+ETK Y    H +            FSFLS F    R ++ID
Sbjct: 24  FFRSISSFEAVEKAIKCAVETKEYLQIPHLVVSLKQPYQNSKLFSFLSAFQHHHRIRVID 83

Query: 123 EILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           EILQSF+P+RPRS  K  +  LL +  Q+
Sbjct: 84  EILQSFVPVRPRSLPKIVYSSLLTYCLQS 112


>ref|XP_007019848.1| Pentatricopeptide repeat-containing protein [Theobroma cacao]
           gi|508725176|gb|EOY17073.1| Pentatricopeptide
           repeat-containing protein [Theobroma cacao]
          Length = 343

 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = -2

Query: 258 QQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIIDEILQSFIPLRP 91
           ++++++A+E K+Y Q+                FSFLSTF    RTQIIDEILQSF  +RP
Sbjct: 35  EETVEAAVEAKSYKQLPDILIAVENTVRIPNPFSFLSTFPLKLRTQIIDEILQSFKSIRP 94

Query: 90  RSRLKTSFDCLLAHTFQN 37
           RSR   ++D LL++T Q+
Sbjct: 95  RSRPHIAYDLLLSYTLQS 112


>ref|XP_004229701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Solanum lycopersicum]
          Length = 333

 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
 Frame = -2

Query: 291 FYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIID 124
           + S  SS  + ++SIK+ +E K Y QI                FSFLS F ++   +I+D
Sbjct: 14  YRSFISSARMLEESIKAMVEDKRYEQIPDILSSSEGFHRTSNPFSFLSNFPENTSVRIVD 73

Query: 123 EILQSFIPLRPRSRLKTSFDCLLAHTFQ 40
           EILQSF P+RPR R + ++ CLL+++ Q
Sbjct: 74  EILQSFTPIRPRYRPQIAYSCLLSYSLQ 101


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
 Frame = -2

Query: 303 VLLRFYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRT 136
           V + F+ + SS    +++IK A+ETK Y +I                FSFLS F +  R 
Sbjct: 20  VCIPFFRSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRI 79

Query: 135 QIIDEILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           ++IDEILQSF+P+RPRS  K  +  LL +  Q+
Sbjct: 80  RVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQS 112


>gb|EYU41276.1| hypothetical protein MIMGU_mgv1a021200mg [Mimulus guttatus]
          Length = 336

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
 Frame = -2

Query: 273 SQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP---FSFLSTFSQSQRTQIIDEILQSFI 103
           S S  Q+SI +AIE+KTYH+I               FS LST S S ++ +IDEILQSFI
Sbjct: 23  SSSSSQESILAAIESKTYHKIPDLLLNNSSSRNPNPFSSLSTLSPSHKSLVIDEILQSFI 82

Query: 102 PLRPRSRLKTSFDCLLAH 49
            +RPRSR  +++  LL++
Sbjct: 83  SIRPRSRPNSAYSHLLSY 100


>ref|XP_006354624.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Solanum tuberosum]
          Length = 333

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
 Frame = -2

Query: 285 STCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIIDEI 118
           S  SS  + ++SIK+ +E K Y QI                FSFLSTF ++   +I+DEI
Sbjct: 16  SFISSARMLEESIKAVVEDKRYEQIPDILSSSEGFHRSPNPFSFLSTFPENTSVKIVDEI 75

Query: 117 LQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           LQSF  +RPR R + ++ CLL+++ Q+
Sbjct: 76  LQSFTTIRPRYRPQIAYSCLLSYSLQS 102


>ref|XP_006354630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Solanum tuberosum]
          Length = 333

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = -2

Query: 285 STCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIIDEI 118
           S  SS  + ++SIK+ +E K Y QI                FSFLS+F ++   +I+DEI
Sbjct: 16  SFISSARMLEESIKAVVEDKRYEQIPDILSSSEGFHRSPNPFSFLSSFPENTSVKIVDEI 75

Query: 117 LQSFIPLRPRSRLKTSFDCLLAHT 46
           LQSF P+RPR R + ++ CLL+++
Sbjct: 76  LQSFTPIRPRYRPQIAYSCLLSYS 99


>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
 Frame = -2

Query: 291 FYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIID 124
           F+ + SS    +++IK A+ETK Y +I                FSFLS F    R ++ID
Sbjct: 24  FFRSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSMLFSFLSAFQHQHRIRVID 83

Query: 123 EILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           EILQSF+P+RPRS  K  +  LL +  Q+
Sbjct: 84  EILQSFVPVRPRSLPKIVYSSLLTYCLQS 112


>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like isoform X1 [Glycine max]
          Length = 342

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = -2

Query: 285 STCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP---FSFLSTFSQSQRTQIIDEIL 115
           S  S Q+LEQ ++++ +E K Y +I               FSF S+F Q+ R QI+DE+L
Sbjct: 27  SVSSLQNLEQ-AVRAEVEAKNYIKIPELLISSDACQISNPFSFFSSFPQNIRVQIVDEML 85

Query: 114 QSFIPLRPRSRLKTSFDCLLAHTFQN 37
           QS IP+RPRS+ + ++  LL++T Q+
Sbjct: 86  QSLIPIRPRSKAQLTYSYLLSYTLQS 111


>gb|EYU28936.1| hypothetical protein MIMGU_mgv1a023791mg, partial [Mimulus
           guttatus]
          Length = 310

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = -2

Query: 258 QQSIKSAIETKTYHQIXXXXXXXXXXXP--FSFLSTFSQSQRTQIIDEILQSFIPLRPRS 85
           Q+SI +AIE+KTYH+I           P  FS LST S S ++ +IDEILQSFI +RPRS
Sbjct: 3   QESILAAIESKTYHKIPDLLNNSSSRNPNPFSSLSTLSPSHKSLVIDEILQSFISIRPRS 62

Query: 84  RLKTSFDCLLAH 49
           R  +++  LL++
Sbjct: 63  RPNSAYSHLLSY 74


>ref|XP_006305261.1| hypothetical protein CARUB_v10009635mg [Capsella rubella]
           gi|482573972|gb|EOA38159.1| hypothetical protein
           CARUB_v10009635mg [Capsella rubella]
          Length = 343

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
 Frame = -2

Query: 291 FYSTCSSQSLEQQSIKSAIETKTYHQIXXXXXXXXXXXP----FSFLSTFSQSQRTQIID 124
           F+   SS    +++IK A+ETK Y +I                FSFLS F    R ++ID
Sbjct: 24  FFRPISSFEAVEKAIKCAVETKEYLRIPDLVVSLKEPYQNSMLFSFLSAFHHHHRIRVID 83

Query: 123 EILQSFIPLRPRSRLKTSFDCLLAHTFQN 37
           EILQSF+P+RPRS  K  +  LL +  Q+
Sbjct: 84  EILQSFVPVRPRSLPKIVYSSLLTYCLQS 112