BLASTX nr result
ID: Cocculus22_contig00029500
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00029500
(397 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-li... 96 5e-18
emb|CBI24290.3| unnamed protein product [Vitis vinifera] 96 5e-18
ref|XP_007132512.1| hypothetical protein PHAVU_011G100500g [Phas... 92 6e-17
ref|XP_004506246.1| PREDICTED: replication factor C subunit 1-li... 89 8e-16
ref|XP_006592364.1| PREDICTED: replication factor C subunit 1-li... 87 2e-15
ref|XP_006592363.1| PREDICTED: replication factor C subunit 1-li... 87 2e-15
ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-li... 87 2e-15
gb|EXB57307.1| Replication factor C subunit 1 [Morus notabilis] 86 7e-15
ref|XP_007010535.1| Replication factor C subunit 1 [Theobroma ca... 85 9e-15
ref|XP_006582373.1| PREDICTED: replication factor C subunit 1-li... 84 2e-14
ref|XP_006343613.1| PREDICTED: replication factor C subunit 1-li... 84 2e-14
ref|XP_006343612.1| PREDICTED: replication factor C subunit 1-li... 84 2e-14
ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi... 82 1e-13
gb|EYU22111.1| hypothetical protein MIMGU_mgv1a000730mg [Mimulus... 81 2e-13
ref|XP_006826419.1| hypothetical protein AMTR_s00004p00160120 [A... 81 2e-13
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ... 81 2e-13
ref|XP_002298160.2| hypothetical protein POPTR_0001s22140g [Popu... 80 4e-13
ref|XP_004242616.1| PREDICTED: replication factor C subunit 1-li... 78 1e-12
ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-li... 78 1e-12
ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Caps... 77 2e-12
>ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
Length = 933
Score = 95.9 bits (237), Expect = 5e-18
Identities = 52/99 (52%), Positives = 63/99 (63%)
Frame = -2
Query: 297 VSSAMSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGR 118
++++ SDIRKWFMK+HD +NGN KP KP + K S + EK G QES+ R
Sbjct: 1 MAASKSDIRKWFMKKHDNDNGNPLKPAKP-EPKASQSGKPSPATVQQEKPVHGGQESSCR 59
Query: 117 RKTSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
RKTSKYF QK KDEKE E PAKRKTQKG ++ P
Sbjct: 60 RKTSKYF----QKPKDEKEMEELPAKRKTQKGTKESLNP 94
>emb|CBI24290.3| unnamed protein product [Vitis vinifera]
Length = 941
Score = 95.9 bits (237), Expect = 5e-18
Identities = 52/99 (52%), Positives = 63/99 (63%)
Frame = -2
Query: 297 VSSAMSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGR 118
++++ SDIRKWFMK+HD +NGN KP KP + K S + EK G QES+ R
Sbjct: 1 MAASKSDIRKWFMKKHDNDNGNPLKPAKP-EPKASQSGKPSPATVQQEKPVHGGQESSCR 59
Query: 117 RKTSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
RKTSKYF QK KDEKE E PAKRKTQKG ++ P
Sbjct: 60 RKTSKYF----QKPKDEKEMEELPAKRKTQKGTKESLNP 94
>ref|XP_007132512.1| hypothetical protein PHAVU_011G100500g [Phaseolus vulgaris]
gi|561005512|gb|ESW04506.1| hypothetical protein
PHAVU_011G100500g [Phaseolus vulgaris]
Length = 938
Score = 92.4 bits (228), Expect = 6e-17
Identities = 51/95 (53%), Positives = 57/95 (60%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMK HDK GN + P KP DK +PEK G QES+GRR TS
Sbjct: 1 MSDIRKWFMKSHDK--GNNAAPSKPSNQPKPSSDK-----PQPEKNVAGGQESSGRRVTS 53
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
KYF QK K+EKET+ PAKRK K ED +P
Sbjct: 54 KYFNTNKQKVKEEKETQELPAKRKNVKDSEDTPEP 88
>ref|XP_004506246.1| PREDICTED: replication factor C subunit 1-like [Cicer arietinum]
Length = 997
Score = 88.6 bits (218), Expect = 8e-16
Identities = 47/92 (51%), Positives = 54/92 (58%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMK H+K N A+ +P PD P+KT Q S+GRRKTS
Sbjct: 1 MSDIRKWFMKSHEKTNNAAANSNQPKKPSPVKPD--------PDKTVPEGQSSSGRRKTS 52
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQKGREDD 10
KYF + K KDE ET PAKRKT KG E+D
Sbjct: 53 KYFNTDKPKPKDEIETGALPAKRKTMKGNEED 84
>ref|XP_006592364.1| PREDICTED: replication factor C subunit 1-like isoform X2 [Glycine
max]
Length = 947
Score = 87.0 bits (214), Expect = 2e-15
Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = -2
Query: 285 MSDIRKWFMKQHDK-NNGNASKPV-KPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRK 112
MSDIRKWFMK HDK NN +SKP +P + D P + EKT G QES+GRR
Sbjct: 1 MSDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKP---------QSEKTVAGGQESSGRRI 51
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
TSKYF + QK KD+KE + PAKRK K E+ +P
Sbjct: 52 TSKYFNSNKQKGKDKKEMQELPAKRKNMKDSEEIPEP 88
>ref|XP_006592363.1| PREDICTED: replication factor C subunit 1-like isoform X1 [Glycine
max]
Length = 949
Score = 87.0 bits (214), Expect = 2e-15
Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = -2
Query: 285 MSDIRKWFMKQHDK-NNGNASKPV-KPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRK 112
MSDIRKWFMK HDK NN +SKP +P + D P + EKT G QES+GRR
Sbjct: 1 MSDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKP---------QSEKTVAGGQESSGRRI 51
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
TSKYF + QK KD+KE + PAKRK K E+ +P
Sbjct: 52 TSKYFNSNKQKGKDKKEMQELPAKRKNMKDSEEIPEP 88
>ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
Length = 942
Score = 87.0 bits (214), Expect = 2e-15
Identities = 48/94 (51%), Positives = 59/94 (62%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
M DIRKWFMK HDK+NG+ SK KP AP ++ KT ES GR+ TS
Sbjct: 1 MGDIRKWFMKAHDKDNGSGSKKAKP-----APSSLEK--SASAGKTGPSGGESAGRQITS 53
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQKGREDDAK 4
KYFA+E Q++KD +ETE +PAKRK QK E+ K
Sbjct: 54 KYFASEKQEAKDAEETEESPAKRKFQKYNEESPK 87
>gb|EXB57307.1| Replication factor C subunit 1 [Morus notabilis]
Length = 1047
Score = 85.5 bits (210), Expect = 7e-15
Identities = 48/97 (49%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = -2
Query: 288 AMSDIRKWFMKQHDKNNGN-ASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRK 112
+ SDIRKWFMK H+K NGN ASKP K + PE+ QG+Q+++GRRK
Sbjct: 86 SQSDIRKWFMKSHEKGNGNSASKPAKSA-------------QALPEEPVQGSQDNSGRRK 132
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
TSKYF+ E K KDEKE P KRKTQ + KP
Sbjct: 133 TSKYFSAE--KPKDEKEMVEVPVKRKTQTDSHEMVKP 167
>ref|XP_007010535.1| Replication factor C subunit 1 [Theobroma cacao]
gi|508727448|gb|EOY19345.1| Replication factor C subunit
1 [Theobroma cacao]
Length = 1012
Score = 85.1 bits (209), Expect = 9e-15
Identities = 49/95 (51%), Positives = 55/95 (57%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMK HDK GNASKP P AP + SV G +E++GRRKTS
Sbjct: 1 MSDIRKWFMKAHDKGKGNASKPANP-----APTNTDSV---------PGGRENSGRRKTS 46
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
KYF Q+ K E+ TE PAKRK Q E KP
Sbjct: 47 KYFPAGKQQPKGEQGTEELPAKRKVQNENESVEKP 81
>ref|XP_006582373.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
Length = 938
Score = 84.3 bits (207), Expect = 2e-14
Identities = 49/92 (53%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = -2
Query: 285 MSDIRKWFMKQHDK-NNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKT 109
MSDIRKWFMK HDK NN +SKP + D P + EKT G QES+GRR T
Sbjct: 1 MSDIRKWFMKTHDKGNNAASSKP-----SSDKP---------QSEKTVAGGQESSGRRIT 46
Query: 108 SKYFANEGQKSKDEKETERTPAKRKTQKGRED 13
SKYF + QK KDEKE + PAKRK K E+
Sbjct: 47 SKYFNSNKQKGKDEKEKQELPAKRKNAKDSEE 78
>ref|XP_006343613.1| PREDICTED: replication factor C subunit 1-like isoform X2 [Solanum
tuberosum]
Length = 992
Score = 84.0 bits (206), Expect = 2e-14
Identities = 45/86 (52%), Positives = 56/86 (65%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMKQHDK GN S + ++ +K S+++ KPE Q QE+T RRKTS
Sbjct: 1 MSDIRKWFMKQHDKGTGNGSM------SKNSAAEKPSLISPKPENLVQEGQETTNRRKTS 54
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQ 28
KYFA + K+K+EK E AKRK Q
Sbjct: 55 KYFATDKVKAKEEK-VEEVSAKRKAQ 79
>ref|XP_006343612.1| PREDICTED: replication factor C subunit 1-like isoform X1 [Solanum
tuberosum]
Length = 993
Score = 84.0 bits (206), Expect = 2e-14
Identities = 45/86 (52%), Positives = 56/86 (65%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMKQHDK GN S + ++ +K S+++ KPE Q QE+T RRKTS
Sbjct: 1 MSDIRKWFMKQHDKGTGNGSM------SKNSAAEKPSLISPKPENLVQEGQETTNRRKTS 54
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQ 28
KYFA + K+K+EK E AKRK Q
Sbjct: 55 KYFATDKVKAKEEK-VEEVSAKRKAQ 79
>ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
gi|75168909|sp|Q9C587.1|RFC1_ARATH RecName:
Full=Replication factor C subunit 1; Short=AtRFC1;
AltName: Full=Activator 1 large subunit; AltName:
Full=Activator 1 subunit 1 gi|13374860|emb|CAC34494.1|
replication factor C large subunit-like protein
[Arabidopsis thaliana] gi|48958527|gb|AAT47816.1|
At5g22010 [Arabidopsis thaliana]
gi|332005585|gb|AED92968.1| replication factor C1
[Arabidopsis thaliana]
Length = 956
Score = 81.6 bits (200), Expect = 1e-13
Identities = 47/97 (48%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQ--ESTGRRK 112
MSDIRKWFMK H+K NG+A K T+ A P K + + P K+ Q ++ E+ RRK
Sbjct: 1 MSDIRKWFMKAHEKGNGSAPKS----TSSKAGPVKNAA-ETAPIKSEQASEDLETADRRK 55
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
TSKYF + K KDEKE E PAKRK + +D KP
Sbjct: 56 TSKYFGKDKTKVKDEKEVEAIPAKRKLKTESDDLVKP 92
>gb|EYU22111.1| hypothetical protein MIMGU_mgv1a000730mg [Mimulus guttatus]
Length = 1000
Score = 80.9 bits (198), Expect = 2e-13
Identities = 48/95 (50%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = -2
Query: 279 DIRKWFMKQHDKNNGN--ASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
DIRKWFMK+H+K++GN AS KP T P+KR P K + QE +GRRKTS
Sbjct: 4 DIRKWFMKKHEKDSGNGSASNQAKPST-----PEKR------PGKMVEEVQELSGRRKTS 52
Query: 105 KYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
KYFA +GQ KDE + E PAK KT K + KP
Sbjct: 53 KYFAKDGQGVKDEMDVEEAPAK-KTAKELVSNVKP 86
>ref|XP_006826419.1| hypothetical protein AMTR_s00004p00160120 [Amborella trichopoda]
gi|548830733|gb|ERM93656.1| hypothetical protein
AMTR_s00004p00160120 [Amborella trichopoda]
Length = 725
Score = 80.9 bits (198), Expect = 2e-13
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMKQHDK NG +S+P KP TT P SKP T+ +E+ RRKTS
Sbjct: 1 MSDIRKWFMKQHDKGNGASSQPSKPATTVSQP--------SKPSSVTEEKKET--RRKTS 50
Query: 105 KYFANEGQKSK--DEKETER-TPAKRKTQK-GREDD 10
KYFA + K +EK TE+ +P KRK +K G ++D
Sbjct: 51 KYFATAPPEKKQGEEKNTEKSSPVKRKIKKVGTDED 86
>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319877|gb|EFH50299.1| AAA-type ATPase family
protein [Arabidopsis lyrata subsp. lyrata]
Length = 960
Score = 80.9 bits (198), Expect = 2e-13
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQ--ESTGRRK 112
MSDIRKWFMK H+K N +A K T+ A P R+ + P K+ Q ++ E+ RRK
Sbjct: 1 MSDIRKWFMKAHEKGNASAPKS----TSSKAGP-ARNAAETAPLKSEQASEDLETAARRK 55
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
TSK+F + K KDEKE E PAKRK + +D AKP
Sbjct: 56 TSKFFGKDKTKVKDEKEVEEIPAKRKLKTDSDDLAKP 92
>ref|XP_002298160.2| hypothetical protein POPTR_0001s22140g [Populus trichocarpa]
gi|550347876|gb|EEE82965.2| hypothetical protein
POPTR_0001s22140g [Populus trichocarpa]
Length = 981
Score = 79.7 bits (195), Expect = 4e-13
Identities = 45/93 (48%), Positives = 50/93 (53%)
Frame = -2
Query: 279 DIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTSKY 100
DIRKWFMK HDK N NA+ + PP K E G QE +GRRKTSKY
Sbjct: 4 DIRKWFMKAHDKGNDNAAT-----NAEKKPPPTEP----KTETPVCGGQEGSGRRKTSKY 54
Query: 99 FANEGQKSKDEKETERTPAKRKTQKGREDDAKP 1
FA QK K++KE E PAKRK Q KP
Sbjct: 55 FAANKQKQKEDKEIEDLPAKRKAQNDGVQSVKP 87
>ref|XP_004242616.1| PREDICTED: replication factor C subunit 1-like [Solanum
lycopersicum]
Length = 1012
Score = 77.8 bits (190), Expect = 1e-12
Identities = 43/84 (51%), Positives = 52/84 (61%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
MSDIRKWFMKQHDK GN S + ++ +K S + KPE Q QE+ RRKTS
Sbjct: 1 MSDIRKWFMKQHDKGTGNGSM------SKNSAAEKPSPTSPKPENLVQEGQETANRRKTS 54
Query: 105 KYFANEGQKSKDEKETERTPAKRK 34
KYFA + K+K+EK E AKRK
Sbjct: 55 KYFATDKVKAKEEK-VEEVSAKRK 77
>ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
Length = 981
Score = 77.8 bits (190), Expect = 1e-12
Identities = 48/107 (44%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPITTDDAPPDKRSVLNSKPEKTTQGTQESTGRRKTS 106
M DIRKWFMK HDK+NG+ SK KP AP ++ KT ES GR+ TS
Sbjct: 1 MGDIRKWFMKAHDKDNGSGSKKAKP-----APSSLEK--SASAGKTGPSGGESAGRQITS 53
Query: 105 KYFANEGQKSKDEKETE-------------RTPAKRKTQKGREDDAK 4
KYFA+E Q++KD +ETE +PAKRK QK E+ K
Sbjct: 54 KYFASEKQEAKDAEETEVLPIIRKSPRDTKESPAKRKFQKYNEESPK 100
>ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Capsella rubella]
gi|482555714|gb|EOA19906.1| hypothetical protein
CARUB_v10000156mg [Capsella rubella]
Length = 953
Score = 77.0 bits (188), Expect = 2e-12
Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = -2
Query: 285 MSDIRKWFMKQHDKNNGNASKPVKPI--TTDDAPPDKRSVLNSKPEKTTQGTQESTGRRK 112
MSDIRKWFMK HDK NG+A K + + AP KPE+ ++ ++ RRK
Sbjct: 1 MSDIRKWFMKAHDKGNGSAPKSTGAVKNAAETAP--------IKPEQASEDL-DTAARRK 51
Query: 111 TSKYFANEGQKSKDEKETERTPAKRKTQKGREDDAK 4
TSKYF + K KDEKE E PAKRK + +D +K
Sbjct: 52 TSKYFGKDKTKVKDEKEVEELPAKRKLKTESDDLSK 87