BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00029431
         (337 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006302538.1| hypothetical protein CARUB_v10020638mg [Caps...    80   4e-13
ref|XP_003591214.1| Lon protease-like protein [Medicago truncatu...    80   4e-13
ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prun...    79   5e-13
ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phas...    78   1e-12
ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [...    78   1e-12
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...    77   2e-12
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...    77   2e-12
gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus...    77   2e-12
gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]        77   2e-12
ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thalian...    77   2e-12
ref|XP_007031141.1| Pseudouridine synthase family protein isofor...    77   3e-12
ref|XP_007031140.1| Pseudouridine synthase family protein isofor...    77   3e-12
ref|XP_002894642.1| pseudouridine synthase family protein [Arabi...    76   4e-12
ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutr...    76   6e-12
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...    76   6e-12
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...    76   6e-12
ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [...    75   9e-12
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...    75   9e-12
ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like...    75   9e-12
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...    75   9e-12

>ref|XP_006302538.1| hypothetical protein CARUB_v10020638mg [Capsella rubella]
           gi|565489799|ref|XP_006302539.1| hypothetical protein
           CARUB_v10020638mg [Capsella rubella]
           gi|482571248|gb|EOA35436.1| hypothetical protein
           CARUB_v10020638mg [Capsella rubella]
           gi|482571249|gb|EOA35437.1| hypothetical protein
           CARUB_v10020638mg [Capsella rubella]
          Length = 329

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRA---QNSE 53
           K IEL RAM           +  ++++EDEHLM VNKP+G+YCE +L S P+     +SE
Sbjct: 54  KDIELKRAMEASSKSSLYNLTRDDVLYEDEHLMAVNKPKGVYCEAVLRSAPQIVLDSSSE 113

Query: 52  LHLANRLDRDTSGLMV 5
            HLANRLDRDTSG+M+
Sbjct: 114 FHLANRLDRDTSGVMI 129


>ref|XP_003591214.1| Lon protease-like protein [Medicago truncatula]
           gi|355480262|gb|AES61465.1| Lon protease-like protein
           [Medicago truncatula]
          Length = 1262

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQ--NSEL 50
           KQIEL+RA            + T II+EDE+L+ VNKPQGIYC+ +L+S+       SEL
Sbjct: 31  KQIELNRATIATSNSELFSLAQTHIIYEDEYLLAVNKPQGIYCDNVLTSLQSQSTVGSEL 90

Query: 49  HLANRLDRDTSGLMV 5
           HLANRLDRDTSG+M+
Sbjct: 91  HLANRLDRDTSGVML 105


>ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prunus persica]
           gi|462401230|gb|EMJ06787.1| hypothetical protein
           PRUPE_ppa008866mg [Prunus persica]
          Length = 316

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 46/99 (46%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
 Frame = -1

Query: 268 QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEK 89
           Q+Y           SK IEL RAM           S  +++FED+ L+VVNKPQG+YCE 
Sbjct: 20  QNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQWLIVVNKPQGVYCES 79

Query: 88  ILSSIPR-----------AQNSELHLANRLDRDTSGLMV 5
           +L S+P+           A   ELHLANRLDRDTSGLMV
Sbjct: 80  VLESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMV 118


>ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phaseolus vulgaris]
           gi|561018186|gb|ESW16990.1| hypothetical protein
           PHAVU_007G200900g [Phaseolus vulgaris]
          Length = 315

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 39/73 (53%), Positives = 53/73 (72%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQNSELHL 44
           KQ+EL RAM           SP++I++ D+HL+ VNK  GIYCE +LSS+  +Q+ ELHL
Sbjct: 48  KQMELSRAMTASSNSSIFSLSPSDILYHDDHLIAVNKHHGIYCETLLSSL-ASQSHELHL 106

Query: 43  ANRLDRDTSGLMV 5
           ANRLDRDTSG+++
Sbjct: 107 ANRLDRDTSGILL 119


>ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [Cicer arietinum]
          Length = 313

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQN--SEL 50
           K+IEL+RA            S   II+EDE L+VVNKP GIYC+ +L+S+   Q   SEL
Sbjct: 36  KEIELNRAKIASTNSQLFSLSKIHIIYEDEWLLVVNKPNGIYCDSVLTSLQSQQTLPSEL 95

Query: 49  HLANRLDRDTSGLMV 5
           HLANRLDRDTSG+MV
Sbjct: 96  HLANRLDRDTSGIMV 110


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQN----- 59
           K IE +RA+           S + +IFEDE ++ VNKPQGIYCE +LSS+P   N     
Sbjct: 60  KDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESVLSSLPDLLNDTGAN 119

Query: 58  -SELHLANRLDRDTSGLMV 5
            SELHLANRLDRDTSG+M+
Sbjct: 120 VSELHLANRLDRDTSGVML 138


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQN----- 59
           K IE +RA+           S + +IFEDE ++ VNKPQGIYCE +LSS+P   N     
Sbjct: 30  KDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESVLSSLPDLLNDTGAN 89

Query: 58  -SELHLANRLDRDTSGLMV 5
            SELHLANRLDRDTSG+M+
Sbjct: 90  VSELHLANRLDRDTSGVML 108


>gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus guttatus]
          Length = 323

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
 Frame = -1

Query: 328 MADKTHISSAITNDPDDPQ-VQSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTE 152
           MA ++ ++S  T   + PQ +Q+Y           SK +EL+RA+           S  +
Sbjct: 1   MAAESRLNSPNTQPENAPQSLQNYPVPLSPPPPLISKNVELNRALTASSKSSLFSLSRKD 60

Query: 151 IIFEDEHLMVVNKPQGIYCEKILSSIPRAQNS------ELHLANRLDRDTSGLMV 5
           ++FEDE L+ VNKP GIYCE ILSS+    N+      ELHL+NRLDRDTSG+++
Sbjct: 61  VLFEDEWLIAVNKPNGIYCETILSSVQILLNTDQVKLQELHLSNRLDRDTSGVIL 115


>gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]
          Length = 293

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRA---QNSE 53
           K IEL RAM           +  +I++EDE+LM VNKP+G+YCE +L S P+     +SE
Sbjct: 24  KDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE 83

Query: 52  LHLANRLDRDTSGLMV 5
            HLANRLDRDTSG+M+
Sbjct: 84  YHLANRLDRDTSGVMI 99


>ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thaliana]
           gi|75140931|sp|Q7XA65.1|PUS1_ARATH RecName: Full=RNA
           pseudouridine synthase 1; AltName: Full=RNA
           pseudouridylate synthase 1; AltName: Full=RNA-uridine
           isomerase 1 gi|33589806|gb|AAQ22669.1| At1g56345
           [Arabidopsis thaliana] gi|110736414|dbj|BAF00174.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195260|gb|AEE33381.1| RNA pseudourine synthase 1
           [Arabidopsis thaliana]
          Length = 322

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRA---QNSE 53
           K IEL RAM           +  +I++EDE+LM VNKP+G+YCE +L S P+     +SE
Sbjct: 53  KDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE 112

Query: 52  LHLANRLDRDTSGLMV 5
            HLANRLDRDTSG+M+
Sbjct: 113 YHLANRLDRDTSGVMI 128


>ref|XP_007031141.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
           gi|508719746|gb|EOY11643.1| Pseudouridine synthase
           family protein isoform 2 [Theobroma cacao]
          Length = 313

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 16/104 (15%)
 Frame = -1

Query: 268 QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEK 89
           Q+Y           SK IEL RAM           S ++I++EDE L+ VNKPQGIYC+ 
Sbjct: 9   QNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDS 68

Query: 88  ILSSIPR----------------AQNSELHLANRLDRDTSGLMV 5
           +L+SIPR                A   ELHLANRLDRDTSG+MV
Sbjct: 69  VLASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMV 112


>ref|XP_007031140.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
           gi|508719745|gb|EOY11642.1| Pseudouridine synthase
           family protein isoform 1 [Theobroma cacao]
          Length = 345

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 47/104 (45%), Positives = 57/104 (54%), Gaps = 16/104 (15%)
 Frame = -1

Query: 268 QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEK 89
           Q+Y           SK IEL RAM           S ++I++EDE L+ VNKPQGIYC+ 
Sbjct: 41  QNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDS 100

Query: 88  ILSSIPR----------------AQNSELHLANRLDRDTSGLMV 5
           +L+SIPR                A   ELHLANRLDRDTSG+MV
Sbjct: 101 VLASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMV 144


>ref|XP_002894642.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297340484|gb|EFH70901.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 321

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRA---QNSE 53
           K IEL RAM           +   +++EDE+LM VNKP+G+YCE +L S P+     +SE
Sbjct: 53  KDIELRRAMEASSKSSLFNLTRDHVLYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSE 112

Query: 52  LHLANRLDRDTSGLMV 5
            HLANRLDRDTSG+M+
Sbjct: 113 FHLANRLDRDTSGVMI 128


>ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutrema salsugineum]
           gi|557088941|gb|ESQ29721.1| hypothetical protein
           EUTSA_v10023586mg [Eutrema salsugineum]
          Length = 333

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 42/94 (44%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
 Frame = -1

Query: 268 QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEK 89
           Q+Y           SK IEL RAM           +  ++++EDE LM VNKP+GIYCE 
Sbjct: 47  QNYPKPISAPPPPISKDIELKRAMEASSKSSLFNLTRNDVLYEDEWLMAVNKPKGIYCES 106

Query: 88  ILSSIPR------AQNSELHLANRLDRDTSGLMV 5
           +LSS P+      +  +E HLANRLDRDTSG+M+
Sbjct: 107 VLSSAPKVIVDSSSTANEFHLANRLDRDTSGVML 140


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
           [Cucumis sativus]
          Length = 366

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQNS---- 56
           K +EL RAM           S  ++I+EDE L+ VNKPQGIYCE +L+++PR        
Sbjct: 70  KNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANA 129

Query: 55  -------ELHLANRLDRDTSGLMV 5
                  ELHLANRLDRDTSG+MV
Sbjct: 130 GIKTSLPELHLANRLDRDTSGVMV 153


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQNS---- 56
           K +EL RAM           S  ++I+EDE L+ VNKPQGIYCE +L+++PR        
Sbjct: 70  KNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANA 129

Query: 55  -------ELHLANRLDRDTSGLMV 5
                  ELHLANRLDRDTSG+MV
Sbjct: 130 GIKTSLPELHLANRLDRDTSGVMV 153


>ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [Fragaria vesca subsp.
           vesca]
          Length = 347

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
 Frame = -1

Query: 268 QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEK 89
           Q+Y           SK +EL RAM           S  ++++ED+ L+VVNKPQGIYCE 
Sbjct: 50  QNYPVPLSPPLPLISKNMELARAMSASSKSSLFTLSRNDVVYEDQWLIVVNKPQGIYCET 109

Query: 88  ILSSIPR--------AQNSELHLANRLDRDTSGLMV 5
           +L S+P+         +  E+HLANRLDRDTSG+M+
Sbjct: 110 VLESVPKLLAESGLEGKAPEIHLANRLDRDTSGVMI 145


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 46/105 (43%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
 Frame = -1

Query: 292 NDPDDPQV-QSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVN 116
           N  D PQ+  +Y           SK IE  RAM             ++I+FED+ LM VN
Sbjct: 43  NSKDAPQILTNYPKPISPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVN 102

Query: 115 KPQGIYCEKILSSIPRAQNS--------ELHLANRLDRDTSGLMV 5
           KPQG+YCE IL S+ R  +          LHLANRLDRDTSG+MV
Sbjct: 103 KPQGVYCETILLSVSRMLDDSDGHDSCRSLHLANRLDRDTSGVMV 147


>ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like [Glycine max]
          Length = 320

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 37/73 (50%), Positives = 52/73 (71%)
 Frame = -1

Query: 223 KQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVNKPQGIYCEKILSSIPRAQNSELHL 44
           KQ+EL RAM           SP +I++ D+HL+ VNK  GIYCE +LSS+  +Q+ +LHL
Sbjct: 48  KQLELSRAMSAASNSSLFSLSPADILYHDDHLIAVNKHPGIYCETLLSSL-ASQSHQLHL 106

Query: 43  ANRLDRDTSGLMV 5
           ANRLDRDT+G+++
Sbjct: 107 ANRLDRDTTGVLL 119


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 16/113 (14%)
 Frame = -1

Query: 295 TNDPDDPQVQSYXXXXXXXXXXXSKQIELDRAMXXXXXXXXXXXSPTEIIFEDEHLMVVN 116
           T+  D   +Q+Y           SKQIEL RA+           S +++++ED+ L+ VN
Sbjct: 11  TSQNDPLTLQNYPTPLSPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVN 70

Query: 115 KPQGIYCEKILSSIPR--AQNSEL--------------HLANRLDRDTSGLMV 5
           KPQG+YCE +L S+PR  A ++EL              HLANRLDRDTSG+MV
Sbjct: 71  KPQGVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMV 123