BLASTX nr result
ID: Cocculus22_contig00029255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00029255
(288 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 87 2e-15
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 86 7e-15
ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus] 75 9e-12
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 75 9e-12
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 75 9e-12
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 75 9e-12
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein... 71 2e-10
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu... 70 2e-10
ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, part... 68 1e-09
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 65 7e-09
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 65 7e-09
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 65 7e-09
ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutr... 65 1e-08
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 57 3e-06
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 87.4 bits (215), Expect = 2e-15
Identities = 39/61 (63%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR-KNPLSMI 6
+DNSSFPR+LEFKNK+ PDPQ LRLK+WFSR+ F VKHI GN+N++ D LSR P+ ++
Sbjct: 1708 MDNSSFPRILEFKNKMPPDPQTLRLKDWFSRYDFTVKHIKGNQNLIPDLLSRPMKPIQIV 1767
Query: 5 T 3
T
Sbjct: 1768 T 1768
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 85.5 bits (210), Expect = 7e-15
Identities = 37/52 (71%), Positives = 45/52 (86%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+DNSSFPR+LEFKNK+ PDPQ LRLK+WFSR+ F VKHI GN+N++ D LSR
Sbjct: 1041 MDNSSFPRILEFKNKMPPDPQTLRLKDWFSRYDFTVKHIKGNQNLIPDLLSR 1092
>ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus]
Length = 124
Score = 75.1 bits (183), Expect = 9e-12
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+DNSSFPR+ +FKNK+L D QLL LK WF+++ F V+HI GN+N++ DFL+R
Sbjct: 70 MDNSSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTR 121
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 75.1 bits (183), Expect = 9e-12
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+DNSSFPR+ +FKNK+L D QLL LK WF+++ F V+HI GN+N++ DFL+R
Sbjct: 1596 MDNSSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTR 1647
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 75.1 bits (183), Expect = 9e-12
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+DNSSFPR+ +FKNK+L D QLL LK WF+++ F V+HI GN+N++ DFL+R
Sbjct: 1694 MDNSSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTR 1745
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 75.1 bits (183), Expect = 9e-12
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+DNSSFPR+ +FKNK+L D QLL LK WF+++ F V+HI GN+N++ DFL+R
Sbjct: 1707 MDNSSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTR 1758
>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
Length = 758
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR------KN 21
+D SSFPR+L FK K +P+ QLLR WFSRF F+VKHI G N L D L+R KN
Sbjct: 361 MDMSSFPRMLHFKQKTIPNSQLLRWAXWFSRFDFQVKHIKGKNNTLPDMLTRPPLRKFKN 420
Query: 20 PLSMIT 3
+S IT
Sbjct: 421 TMSYIT 426
>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
gi|550349213|gb|EEE85243.2| hypothetical protein
POPTR_0001s38890g [Populus trichocarpa]
Length = 309
Score = 70.5 bits (171), Expect = 2e-10
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+D SSFP++L+FK K+LP PQLLRL EWF ++ F V+HI G KN++ D L+R
Sbjct: 94 MDCSSFPKMLQFKRKMLPHPQLLRLAEWFPKYTFTVEHIKGTKNLIPDMLTR 145
>ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, partial [Eutrema
salsugineum] gi|557109754|gb|ESQ50051.1| hypothetical
protein EUTSA_v10002258mg, partial [Eutrema salsugineum]
Length = 260
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+D SSFP++++FK KILP QLLR WFS+++F VKHI G N L DFLSR
Sbjct: 59 MDMSSFPKMIQFKQKILPQAQLLRWASWFSQWKFDVKHIKGKYNFLPDFLSR 110
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 65.5 bits (158), Expect = 7e-09
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSRKNPLS 12
+D +FP+++ KI+P+ QLLR +WFS +QF+VKH+ G N+LADFLSR + S
Sbjct: 1754 MDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPHEFS 1810
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 65.5 bits (158), Expect = 7e-09
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSRKNPLS 12
+D +FP+++ KI+P+ QLLR +WFS +QF+VKH+ G N+LADFLSR + S
Sbjct: 1754 MDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPHEFS 1810
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 65.5 bits (158), Expect = 7e-09
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSRKNPLS 12
+D +FP+++ KI+P+ QLLR +WFS +QF+VKH+ G N+LADFLSR + S
Sbjct: 1753 MDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPHEFS 1809
>ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutrema salsugineum]
gi|557107078|gb|ESQ47393.1| hypothetical protein
EUTSA_v10028344mg [Eutrema salsugineum]
Length = 1508
Score = 65.1 bits (157), Expect = 1e-08
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLADFLSR 27
+D SSFP++++FK KILP QLLR WFS+++F VKH G N L DFLSR
Sbjct: 1161 MDMSSFPKMIQFKQKILPQAQLLRWASWFSQWKFDVKHNIGKDNFLPDFLSR 1212
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = -2
Query: 182 LDNSSFPRVLEFKNKILPDPQLLRLKEWFSRFQFKVKHIPGNKNVLA 42
+D SSF ++++FK KILP QLLR WFS+++F VKHI G N L+
Sbjct: 1601 MDMSSFSKMIQFKQKILPQAQLLRWASWFSQWKFDVKHIKGKDNFLS 1647