BLASTX nr result
ID: Cocculus22_contig00029010
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00029010
(328 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 89 5e-16
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 89 5e-16
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 89 5e-16
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 87 2e-15
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 87 2e-15
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 87 2e-15
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr... 87 2e-15
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 84 3e-14
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 83 4e-14
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 83 4e-14
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 83 5e-14
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 83 5e-14
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun... 82 1e-13
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 82 1e-13
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no... 79 7e-13
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_002298071.2| hypothetical protein POPTR_0001s08650g [Popu... 77 3e-12
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 76 4e-12
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
subunit 1-like [Vitis vinifera]
Length = 1560
Score = 89.4 bits (220), Expect = 5e-16
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK+ FRD+ N + Y +KDNSL++MLKAGSKG++LKL QQ LCLGLQHS VPL F++
Sbjct: 734 VCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKI 793
Query: 286 PCKLSSSMKNR 318
P +LS + N+
Sbjct: 794 PHQLSCAAWNK 804
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 89.4 bits (220), Expect = 5e-16
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK+ FRD+ N + Y +KDNSL++MLKAGSKG++LKL QQ LCLGLQHS VPL F++
Sbjct: 603 VCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKI 662
Query: 286 PCKLSSSMKNR 318
P +LS + N+
Sbjct: 663 PHQLSCAAWNK 673
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 89.4 bits (220), Expect = 5e-16
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK+ FRD+ N + Y +KDNSL++MLKAGSKG++LKL QQ LCLGLQHS VPL F++
Sbjct: 704 VCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKI 763
Query: 286 PCKLSSSMKNR 318
P +LS + N+
Sbjct: 764 PHQLSCAAWNK 774
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 87.4 bits (215), Expect = 2e-15
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK VF D+ N YGSKDNSL++M KAGSKG++LKL Q +LCLGLQHS PL FR
Sbjct: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
Query: 286 PCKLSSSMKNR 318
P +LS + NR
Sbjct: 760 PHELSCAAWNR 770
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 87.4 bits (215), Expect = 2e-15
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK VF D+ N YGSKDNSL++M KAGSKG++LKL Q +LCLGLQHS PL FR
Sbjct: 738 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 797
Query: 286 PCKLSSSMKNR 318
P +LS + NR
Sbjct: 798 PHELSCAAWNR 808
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 87.4 bits (215), Expect = 2e-15
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V +FK+VFRD+ N + Y +KDNSL++M KAGSKG++LKL Q +LCLGLQHS VPL FR
Sbjct: 715 VDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRF 774
Query: 286 PCKLSSSMKN 315
P +LS + N
Sbjct: 775 PHQLSCAAWN 784
>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
gi|557542783|gb|ESR53761.1| hypothetical protein
CICLE_v10018489mg [Citrus clementina]
Length = 1443
Score = 87.0 bits (214), Expect = 2e-15
Identities = 44/71 (61%), Positives = 51/71 (71%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK VF D+ N YGSKDNSL+ M KAGSKG++LKL Q +LCLGLQHS PL FR
Sbjct: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLGMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
Query: 286 PCKLSSSMKNR 318
P +LS + NR
Sbjct: 760 PHELSCAAWNR 770
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK+VFRD+ N + Y KDNSL++M KAGSKG+++KL Q ++CLGLQHS V L F +
Sbjct: 712 VDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSL 771
Query: 286 PCKLSSSMKN 315
P KLS + N
Sbjct: 772 PHKLSCAAWN 781
>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Solanum tuberosum]
Length = 1233
Score = 83.2 bits (204), Expect = 4e-14
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK+VFRD+ N + Y S DNSL++MLKAGSKG++LKL Q ++CLGLQ S VP+ FR+P
Sbjct: 476 AFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPR 535
Query: 292 KLSSSMKN 315
+LS N
Sbjct: 536 QLSCDAWN 543
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 83.2 bits (204), Expect = 4e-14
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK+VFRD+ N + Y S DNSL++MLKAGSKG++LKL Q ++CLGLQ S VP+ FR+P
Sbjct: 689 AFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPR 748
Query: 292 KLSSSMKN 315
+LS N
Sbjct: 749 QLSCDAWN 756
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
lycopersicum]
Length = 1446
Score = 82.8 bits (203), Expect = 5e-14
Identities = 40/68 (58%), Positives = 51/68 (75%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK+VFRD+ N + Y S DNSL++MLKAGSKG++LKL Q +CLGLQ S VP+ FR+P
Sbjct: 689 AFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPR 748
Query: 292 KLSSSMKN 315
+LS N
Sbjct: 749 QLSCDAWN 756
>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 82.8 bits (203), Expect = 5e-14
Identities = 40/68 (58%), Positives = 51/68 (75%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK+VFRD+ N + Y S DNSL++MLKAGSKG++LKL Q +CLGLQ S VP+ FR+P
Sbjct: 381 AFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPR 440
Query: 292 KLSSSMKN 315
+LS N
Sbjct: 441 QLSCDAWN 448
>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
gi|462406650|gb|EMJ12114.1| hypothetical protein
PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK +FRD+ + Y KDNSL++MLKAGSKG++ KL Q ++CLGLQHS +PL FR+P
Sbjct: 603 AFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPN 662
Query: 292 KLSSSMKN 315
+LS + N
Sbjct: 663 QLSCAAWN 670
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/71 (54%), Positives = 52/71 (73%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AFK VFRD+ Y SKDN+L++M K+GSKG++LK+ Q ++CLGLQHS VPL FR+
Sbjct: 706 VDAFKHVFRDIQTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRM 765
Query: 286 PCKLSSSMKNR 318
P +LS N+
Sbjct: 766 PLQLSCDAWNK 776
>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
Length = 1410
Score = 79.0 bits (193), Expect = 7e-13
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
+ AFK+VFRD+ Y +DNSL++MLKAGSKG++LKL Q ++CLGLQHS VPL F
Sbjct: 658 IDAFKKVFRDIQTLAFRYACEDNSLLTMLKAGSKGNLLKLVQHSMCLGLQHSLVPLSFGF 717
Query: 286 PCKLSSSMKN 315
P LS + N
Sbjct: 718 PHLLSCAAWN 727
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 78.2 bits (191), Expect = 1e-12
Identities = 40/70 (57%), Positives = 47/70 (67%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V A KE FRD+ N Y DNSL++M KAGSKG+MLKL Q +CLGLQHS VPL F+
Sbjct: 693 VDAIKEGFRDVQNLAYKYAGVDNSLLAMFKAGSKGNMLKLVQHCMCLGLQHSLVPLSFKF 752
Query: 286 PCKLSSSMKN 315
P +LS N
Sbjct: 753 PNQLSCDAWN 762
>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Cicer arietinum]
Length = 1474
Score = 77.8 bits (190), Expect = 1e-12
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AF++VFR++ + Y KDN+ ++M KAGSKG++LKL Q ++CLGLQHS V LP+++
Sbjct: 708 VDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKI 767
Query: 286 PCKLSSSMKN 315
P KLS + N
Sbjct: 768 PRKLSCAAWN 777
>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Cicer arietinum] gi|502160026|ref|XP_004511608.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X2 [Cicer arietinum]
gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
RNA polymerase D subunit 1-like isoform X3 [Cicer
arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
DNA-directed RNA polymerase D subunit 1-like isoform X4
[Cicer arietinum]
Length = 1475
Score = 77.8 bits (190), Expect = 1e-12
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AF++VFR++ + Y KDN+ ++M KAGSKG++LKL Q ++CLGLQHS V LP+++
Sbjct: 708 VDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKI 767
Query: 286 PCKLSSSMKN 315
P KLS + N
Sbjct: 768 PRKLSCAAWN 777
>ref|XP_002298071.2| hypothetical protein POPTR_0001s08650g [Populus trichocarpa]
gi|550346847|gb|EEE82876.2| hypothetical protein
POPTR_0001s08650g [Populus trichocarpa]
Length = 1109
Score = 77.0 bits (188), Expect = 3e-12
Identities = 36/71 (50%), Positives = 52/71 (73%)
Frame = +1
Query: 106 VGAFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRV 285
V AF+ VFRD+ + + Y S+DNS ++M KAGSKG++LKL Q ++CLGLQH+ L FR+
Sbjct: 509 VDAFRLVFRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRI 568
Query: 286 PCKLSSSMKNR 318
P +LS + N+
Sbjct: 569 PHQLSCAGWNK 579
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +1
Query: 112 AFKEVFRDLLNRIIVYGSKDNSLISMLKAGSKGSMLKLAQQTLCLGLQHSSVPLPFRVPC 291
AFK+VFRDLL + + S DNS++ M+ AGSKGSMLK AQQT C+GLQ + PFR+P
Sbjct: 716 AFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPS 775
Query: 292 KLS 300
+LS
Sbjct: 776 QLS 778