BLASTX nr result
ID: Cocculus22_contig00028778
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00028778
(274 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] 74 2e-11
gb|EXC31089.1| hypothetical protein L484_001076 [Morus notabilis] 72 1e-10
ref|XP_002524945.1| pentatricopeptide repeat-containing protein,... 65 1e-08
ref|XP_006380676.1| hypothetical protein POPTR_0007s10370g [Popu... 64 2e-08
ref|XP_004289184.1| PREDICTED: pentatricopeptide repeat-containi... 63 4e-08
ref|XP_007047423.1| Tetratricopeptide repeat (TPR)-like superfam... 61 1e-07
ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containi... 59 5e-07
ref|XP_006466530.1| PREDICTED: pentatricopeptide repeat-containi... 59 9e-07
ref|XP_004229576.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
ref|XP_006354595.1| PREDICTED: pentatricopeptide repeat-containi... 57 2e-06
ref|XP_006426011.1| hypothetical protein CICLE_v10025167mg [Citr... 55 8e-06
>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAF---HDDALFMYSQMLSNGVDPDAFTLSFVLKLCPTCPFK 106
RT NP VFFWT+IIH HA H+ AL Y+QML+ GV+P+AFT S +LKLCP P K
Sbjct: 87 RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGK 144
>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAF---HDDALFMYSQMLSNGVDPDAFTLSFVLKLCPTCPFK 106
RT NP VFFWT+IIH HA H+ AL Y+QML+ GV+P+AFT S +LKLCP P K
Sbjct: 34 RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGK 91
>gb|EXC31089.1| hypothetical protein L484_001076 [Morus notabilis]
Length = 625
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = -2
Query: 273 RRTHNPKVFFWTSIIHAHA---FHDDALFMYSQMLSNGVDPDAFTLSFVLKLCPTCP 112
RRT P VFFWTS+IHAHA HD AL Y++ML+ GVDP+ FT S VLK+C P
Sbjct: 83 RRTPRPNVFFWTSLIHAHAQSGLHDQALLYYAEMLTQGVDPNCFTFSTVLKVCSLEP 139
>ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535780|gb|EEF37442.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 417
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAFHD---DALFMYSQMLSNGVDPDAFTLSFVLKLCP 121
+T NP VFF+TSIIHAH FH AL Y+QML+ V P+AFT S +LK CP
Sbjct: 91 QTQNPNVFFYTSIIHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSSILKSCP 143
>ref|XP_006380676.1| hypothetical protein POPTR_0007s10370g [Populus trichocarpa]
gi|550334566|gb|ERP58473.1| hypothetical protein
POPTR_0007s10370g [Populus trichocarpa]
Length = 631
Score = 63.9 bits (154), Expect = 2e-08
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAFHDD---ALFMYSQMLSNGVDPDAFTLSFVLKLCPTCPFK 106
+T NP VFF+TSIIHAH H+ AL Y QMLS V P+AFT S +LK CP P K
Sbjct: 90 KTQNPNVFFYTSIIHAHTIHNLHHLALLFYVQMLSQNVFPNAFTFSSILKSCPIEPAK 147
>ref|XP_004289184.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 619
Score = 63.2 bits (152), Expect = 4e-08
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Frame = -2
Query: 273 RRTHNPKVFFWTSIIHAHA---FHDDALFMYSQMLSNGVDPDAFTLSFVLKLCP 121
R+T NP VFFW+SII++H+ H AL Y+QML+NGV+P+ FT S + K CP
Sbjct: 77 RQTQNPSVFFWSSIINSHSKRGLHHLALTFYTQMLTNGVEPNCFTFSALFKSCP 130
>ref|XP_007047423.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508699684|gb|EOX91580.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 633
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAFH---DDALFMYSQMLSNGVDPDAFTLSFVLKLC 124
RT NP +FF+TSII+AHA H +ALF+Y++ML GV P+ FT S +LK C
Sbjct: 92 RTLNPNIFFYTSIINAHALHGLSQEALFIYTRMLFEGVQPNEFTFSSILKSC 143
>ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 59.3 bits (142), Expect = 5e-07
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHAFHD---DALFMYSQMLSNGVDPDAFTLSFVLKLCPTCP 112
RT NP VF WT II+AHA D AL YSQML++ + P+AFTLS +LK C P
Sbjct: 80 RTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHP 135
>ref|XP_006466530.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Citrus sinensis]
Length = 622
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHA---FHDDALFMYSQMLSNGVDPDAFTLSFVLKLCPTCP 112
+TH VF +T+IIH HA ++ ALF YSQML + ++P+AFT S LK CP P
Sbjct: 80 QTHKKNVFIYTAIIHCHAQRNSYEQALFYYSQMLIDSIEPNAFTFSSALKSCPLKP 135
>ref|XP_004229576.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Solanum lycopersicum]
Length = 624
Score = 58.2 bits (139), Expect = 1e-06
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 273 RRTHNPKVFFWTSIIHAHAFHD---DALFMYSQMLSNGVDPDAFTLSFVLKLCP 121
+RTH+P VF +T+IIH H +D A +Y QML++ ++P+AFT S +LK CP
Sbjct: 83 KRTHSPTVFSYTAIIHNHVINDLYEQAFVLYIQMLTHNIEPNAFTFSSMLKTCP 136
>ref|XP_006354595.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X1 [Solanum tuberosum]
gi|565376192|ref|XP_006354596.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X2 [Solanum tuberosum]
gi|565376194|ref|XP_006354597.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X3 [Solanum tuberosum]
gi|565376199|ref|XP_006354598.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X4 [Solanum tuberosum]
gi|565376201|ref|XP_006354599.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X5 [Solanum tuberosum]
gi|565376203|ref|XP_006354600.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like isoform X6 [Solanum tuberosum]
Length = 624
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = -2
Query: 273 RRTHNPKVFFWTSIIHAHAFHD---DALFMYSQMLSNGVDPDAFTLSFVLKLCP 121
+RTH+P VF +T+IIH H +D A +Y QML+ ++P+AFT S +LK CP
Sbjct: 83 KRTHSPTVFSYTAIIHNHVINDLYEQAYVLYIQMLTQNIEPNAFTFSTLLKTCP 136
>ref|XP_006426011.1| hypothetical protein CICLE_v10025167mg [Citrus clementina]
gi|557528001|gb|ESR39251.1| hypothetical protein
CICLE_v10025167mg [Citrus clementina]
Length = 622
Score = 55.5 bits (132), Expect = 8e-06
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = -2
Query: 270 RTHNPKVFFWTSIIHAHA---FHDDALFMYSQMLSNGVDPDAFTLSFVLKLCPTCP 112
+TH VF +T+IIH HA ++ ALF YSQML + ++P+AFT S L CP P
Sbjct: 80 QTHKKNVFIYTAIIHCHAQRNSYEQALFYYSQMLIDNIEPNAFTFSSALISCPLKP 135