BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00028025
         (275 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   108   1e-21
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   107   2e-21
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   107   2e-21
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   106   4e-21
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   104   1e-20
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   104   1e-20
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   103   3e-20
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   103   3e-20
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   100   2e-19
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   100   2e-19
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   100   4e-19
ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] ...    99   5e-19
gb|EXB81509.1| RNA pseudourine synthase 2 [Morus notabilis]            99   6e-19
ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citr...    99   6e-19
ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citr...    99   6e-19
ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thalian...    99   6e-19
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...    99   6e-19
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...    99   8e-19
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...    97   2e-18
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...    97   2e-18

>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score =  108 bits (269), Expect = 1e-21
 Identities = 50/73 (68%), Positives = 64/73 (87%)
 Frame = -1

Query: 221 LAGRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDK 42
           + GR  N++GV+L+ETV+  + K RLDSW+SSRI+GVSRARVQSSIR+GLVSVNGRV DK
Sbjct: 48  IPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDK 107

Query: 41  VSHVIRSGDKVNC 3
           VSH+++ GDKV+C
Sbjct: 108 VSHMVKGGDKVDC 120


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score =  107 bits (267), Expect = 2e-21
 Identities = 50/73 (68%), Positives = 64/73 (87%)
 Frame = -1

Query: 221 LAGRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDK 42
           + GR  N++GV+L+ETV+  + K RLDSW+SSRI+GVSRARVQSSIR+GLVSVNGRV DK
Sbjct: 48  IPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDK 107

Query: 41  VSHVIRSGDKVNC 3
           VSH+++ GDKV+C
Sbjct: 108 VSHMVKGGDKVDC 120


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  107 bits (266), Expect = 2e-21
 Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
 Frame = -1

Query: 224 TLAGRTGNFAGVRLDETV---EKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGR 54
           +++GR  N+AGVRL+ETV      S K RLDSWISSRI G+SRARVQSSIR+GLVSVN R
Sbjct: 50  SVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDR 109

Query: 53  VIDKVSHVIRSGDKVNC 3
           ++DKVSHVIR+GDKVNC
Sbjct: 110 IVDKVSHVIRAGDKVNC 126


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
           gi|222843675|gb|EEE81222.1| pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 444

 Score =  106 bits (264), Expect = 4e-21
 Identities = 50/71 (70%), Positives = 64/71 (90%)
 Frame = -1

Query: 215 GRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVS 36
           G+  N++GV+L+E+V+  S KSRLDSWISSRI G+SRARVQSSI++GLVSVNG+VIDKVS
Sbjct: 73  GQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVS 132

Query: 35  HVIRSGDKVNC 3
           H +++GDKVNC
Sbjct: 133 HNVKAGDKVNC 143


>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  104 bits (260), Expect = 1e-20
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = -1

Query: 224 TLAGRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVID 45
           +++GR  NF+G +++ETV   S K R+DSWISSRI G+SRARVQSSIR+GLVSVNG VI 
Sbjct: 51  SISGRPNNFSGHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLVSVNGHVIS 110

Query: 44  KVSHVIRSGDKVNC 3
           KVSHV+R GD VNC
Sbjct: 111 KVSHVVRDGDSVNC 124


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 432

 Score =  104 bits (260), Expect = 1e-20
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = -1

Query: 224 TLAGRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVID 45
           +++GR  NF+G +++ETV   S K R+DSWISSRI G+SRARVQSSIR+GLVSVNG VI 
Sbjct: 51  SISGRPNNFSGHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLVSVNGHVIS 110

Query: 44  KVSHVIRSGDKVNC 3
           KVSHV+R GD VNC
Sbjct: 111 KVSHVVRDGDSVNC 124


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  103 bits (256), Expect = 3e-20
 Identities = 50/70 (71%), Positives = 58/70 (82%)
 Frame = -1

Query: 212 RTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSH 33
           R  N+AG RL+ETV+    K RLDSWIS RI G+SRARVQSSIRAGLVSVNGRVIDKVSH
Sbjct: 57  RIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSH 116

Query: 32  VIRSGDKVNC 3
            +++GD +NC
Sbjct: 117 NVKAGDVINC 126


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  103 bits (256), Expect = 3e-20
 Identities = 50/70 (71%), Positives = 58/70 (82%)
 Frame = -1

Query: 212 RTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSH 33
           R  N+AG RL+ETV+    K RLDSWIS RI G+SRARVQSSIRAGLVSVNGRVIDKVSH
Sbjct: 57  RIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSH 116

Query: 32  VIRSGDKVNC 3
            +++GD +NC
Sbjct: 117 NVKAGDVINC 126


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao] gi|508723229|gb|EOY15126.1| Pseudouridine
           synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 409

 Score =  100 bits (249), Expect = 2e-19
 Identities = 49/68 (72%), Positives = 61/68 (89%), Gaps = 1/68 (1%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQ-KSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVI 27
           ++ GV+L+ETV+ T Q K RLDSWISSRI+G+SRARVQSSI++GLV+VNGRV+DKVSH +
Sbjct: 49  SYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGL 108

Query: 26  RSGDKVNC 3
           R GDKVNC
Sbjct: 109 RHGDKVNC 116


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
           gi|508723228|gb|EOY15125.1| Pseudouridine synthase
           family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  100 bits (249), Expect = 2e-19
 Identities = 49/68 (72%), Positives = 61/68 (89%), Gaps = 1/68 (1%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQ-KSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVI 27
           ++ GV+L+ETV+ T Q K RLDSWISSRI+G+SRARVQSSI++GLV+VNGRV+DKVSH +
Sbjct: 62  SYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGL 121

Query: 26  RSGDKVNC 3
           R GDKVNC
Sbjct: 122 RHGDKVNC 129


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
           gi|482570987|gb|EOA35175.1| hypothetical protein
           CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N AG+R++ETV+    K RLDSWISSRI GVSRARVQSSIR GLV+VNGRV+DKVSH ++
Sbjct: 65  NNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 124

Query: 23  SGDKVNC 3
           +GD+VNC
Sbjct: 125 AGDEVNC 131


>ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
           gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 930

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 47/67 (70%), Positives = 58/67 (86%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N AG+R++ETV+    K RLDSWISSR+ GVSRARVQSSIR GLV+VNGRV+DKVSH ++
Sbjct: 567 NNAGLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 626

Query: 23  SGDKVNC 3
           +GD+VNC
Sbjct: 627 AGDEVNC 633


>gb|EXB81509.1| RNA pseudourine synthase 2 [Morus notabilis]
          Length = 369

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 49/73 (67%), Positives = 59/73 (80%)
 Frame = -1

Query: 221 LAGRTGNFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDK 42
           LAG   NFAGVRL+ TV   S K RLDSWISSR+ G+SRARVQSSIR GLV VNG+V+DK
Sbjct: 68  LAGVRPNFAGVRLEATVAVDSGKVRLDSWISSRVSGISRARVQSSIRLGLVRVNGQVVDK 127

Query: 41  VSHVIRSGDKVNC 3
           VS  +++GDK++C
Sbjct: 128 VSQNVKTGDKIDC 140


>ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537377|gb|ESR48495.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 341

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N+AGV+L+ETV+  + K RLD+WISSRI+G+SRARVQSSIR+GLVSVNG+V+ KVSH ++
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVK 113

Query: 23  SGDKVNC 3
            GD VNC
Sbjct: 114 GGDMVNC 120


>ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537376|gb|ESR48494.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 324

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N+AGV+L+ETV+  + K RLD+WISSRI+G+SRARVQSSIR+GLVSVNG+V+ KVSH ++
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVK 113

Query: 23  SGDKVNC 3
            GD VNC
Sbjct: 114 GGDMVNC 120


>ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 313

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/67 (71%), Positives = 57/67 (85%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N AG+R++E V+    K RLDSWISSRI GVSRARVQSSIR GLV+VNGRV+DKVSH ++
Sbjct: 65  NNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 124

Query: 23  SGDKVNC 3
           SGD+VNC
Sbjct: 125 SGDEVNC 131


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
           pseudouridine synthase 2, chloroplastic; AltName:
           Full=RNA pseudouridylate synthase 2; AltName:
           Full=RNA-uridine isomerase 2; Flags: Precursor
           gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 430

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/67 (71%), Positives = 57/67 (85%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N AG+R++E V+    K RLDSWISSRI GVSRARVQSSIR GLV+VNGRV+DKVSH ++
Sbjct: 65  NNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 124

Query: 23  SGDKVNC 3
           SGD+VNC
Sbjct: 125 SGDEVNC 131


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 45/67 (67%), Positives = 59/67 (88%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVIR 24
           N+AGV+L+ETV+  + K RLD+WISSRI+G+SRARVQSSIR+GLVS+NG+V+ KVSH ++
Sbjct: 54  NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113

Query: 23  SGDKVNC 3
            GD VNC
Sbjct: 114 GGDMVNC 120


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
           gi|557086678|gb|ESQ27530.1| hypothetical protein
           EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQ-KSRLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSHVI 27
           N AG++L+ETVE   + K RLDSWISSR+ GVSRARVQSSIR GLVSVNGRV+DKVSH +
Sbjct: 65  NNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNV 124

Query: 26  RSGDKVNC 3
           ++GD+VNC
Sbjct: 125 KAGDEVNC 132


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 48/70 (68%), Positives = 58/70 (82%), Gaps = 3/70 (4%)
 Frame = -1

Query: 203 NFAGVRLDETVEKTSQKS---RLDSWISSRIEGVSRARVQSSIRAGLVSVNGRVIDKVSH 33
           N+ G+RL+ETV+    KS   RLDSWISSRI G+SRARVQSSI++GLVSVNGRV+DKVSH
Sbjct: 52  NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSH 111

Query: 32  VIRSGDKVNC 3
            ++ GDKV C
Sbjct: 112 NVKFGDKVTC 121