BLASTX nr result
ID: Cocculus22_contig00027236
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00027236
(550 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFB73912.1| polyprotein [Citrus sinensis] 71 4e-25
gb|AFB73911.1| polyprotein [Citrus sinensis] 70 7e-25
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 74 4e-23
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 72 1e-22
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 72 1e-22
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 73 2e-22
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 65 5e-22
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 70 8e-22
emb|CAJ76058.1| gag protein [Cucumis melo] 53 1e-10
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 42 1e-06
ref|XP_007038204.1| Transducin/WD40 repeat-like superfamily prot... 44 4e-06
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 70.9 bits (172), Expect(2) = 4e-25
Identities = 49/123 (39%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGK----IV*RQLGTN*GKSLVIAKGGDGKQHHSQCTLDIS 170
KFNGN FSLWK+++KA L + I R + K + H + +S
Sbjct: 9 KFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHLALADGVLS 68
Query: 171 GCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSLF 350
+ TAKEIW+TLTKL EAKSLH++I L K + T +M+ES + +H NTL +LF
Sbjct: 69 SVA---EKNTAKEIWDTLTKLYEAKSLHNKIFL-KRKLYTLRMAESTMVTDHINTLKTLF 124
Query: 351 LNL 359
L
Sbjct: 125 SQL 127
Score = 69.7 bits (169), Expect(2) = 4e-25
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRG--TSLVFNDIAAAVLKKKIER 520
SQLT L IEE+ERAELLLQSLPDSYDQLI+ LTN SLVF+D+AA+VL ++ R
Sbjct: 125 SQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVLNEESRR 183
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 70.1 bits (170), Expect(2) = 7e-25
Identities = 49/123 (39%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGK----IV*RQLGTN*GKSLVIAKGGDGKQHHSQCTLDIS 170
KFNGN FSLWK+++KA L + I R + K + H + +S
Sbjct: 9 KFNGNNFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHLALADGVLS 68
Query: 171 GCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSLF 350
+ TAKEIW+TLTKL EAKSLH++I L K + T +M+ES + +H NTL +LF
Sbjct: 69 SVA---EKNTAKEIWDTLTKLYEAKSLHNKIFL-KRKLYTLRMAESTMVTDHINTLKTLF 124
Query: 351 LNL 359
L
Sbjct: 125 SQL 127
Score = 69.7 bits (169), Expect(2) = 7e-25
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRG--TSLVFNDIAAAVLKKKIER 520
SQLT L IEE+ERAELLLQSLPDSYDQLI+ LTN SLVF+D+AA+VL ++ R
Sbjct: 125 SQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAASVLNEESRR 183
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 73.6 bits (179), Expect(2) = 4e-23
Identities = 51/124 (41%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIA-----KGGDGKQHHSQCTLDI 167
KFNG KFSLWKL+I+A L + L G+ I + D + +
Sbjct: 9 KFNGRKFSLWKLKIRAILRKDNC----LDAIDGRPADITDEKWKEMDDNAVANLHLAMAD 64
Query: 168 SGCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSL 347
S + TAKEIW+TL KL E KSLH+RI L K R T +M ES ++ +H NTLN+L
Sbjct: 65 SVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFL-KRRLYTLRMGESTSVTDHINTLNTL 123
Query: 348 FLNL 359
F L
Sbjct: 124 FSQL 127
Score = 60.5 bits (145), Expect(2) = 4e-23
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNR--GTSLVFNDIAAAVLKKKIER 520
SQLT + I E+ERAELLLQSLPDSYDQLI+ +TN +L F+D+A A+L+++ R
Sbjct: 125 SQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRR 183
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 71.6 bits (174), Expect(2) = 1e-22
Identities = 50/124 (40%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIA-----KGGDGKQHHSQCTLDI 167
KFNG FSLWKL+I+A L + L G+ I + D + +
Sbjct: 9 KFNGRNFSLWKLKIRAILRKDNC----LDAIDGRPADITDEKWKEMDDNAVANLHLAMAD 64
Query: 168 SGCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSL 347
S + TAKEIW+TL KL E KSLH+RI L K R T +M ES ++ +H NTLN+L
Sbjct: 65 SVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFL-KRRLYTLRMGESTSVTDHINTLNTL 123
Query: 348 FLNL 359
F L
Sbjct: 124 FSQL 127
Score = 60.5 bits (145), Expect(2) = 1e-22
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRG--TSLVFNDIAAAVLKKKIER 520
SQLT + I E+ERAELLLQSLPDSYDQLI+ +TN +L F+D+A A+L+++ R
Sbjct: 125 SQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEEESRR 183
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 71.6 bits (174), Expect(2) = 1e-22
Identities = 50/124 (40%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIA-----KGGDGKQHHSQCTLDI 167
KFNG FSLWKL+I+A L + L G+ I + D + +
Sbjct: 9 KFNGRNFSLWKLKIRAILRKDNC----LDAIDGRPADITDEKWKEMDDNAVANLHLAMAD 64
Query: 168 SGCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSL 347
S + TAKEIW+TL KL E KSLH+RI L K R T +M ES ++ +H NTLN+L
Sbjct: 65 SVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFL-KRRLYTLRMGESTSVTDHINTLNTL 123
Query: 348 FLNL 359
F L
Sbjct: 124 FSQL 127
Score = 60.5 bits (145), Expect(2) = 1e-22
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNR--GTSLVFNDIAAAVLKKKIER 520
SQLT + I E+ERAELLLQSLPDSYDQLI+ +TN +L F+D+A A+L+++ R
Sbjct: 125 SQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRR 183
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 72.8 bits (177), Expect(2) = 2e-22
Identities = 51/124 (41%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIA-----KGGDGKQHHSQCTLDI 167
KFNG FSLWKL+I+A L + L G+ I + D + +
Sbjct: 9 KFNGRNFSLWKLKIRAILRKDNC----LDAIDGRLADITDEKWKEMDDNAVANLHLAMAD 64
Query: 168 SGCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSL 347
S + TAKEIW+TL KL E KSLH+RI L K R T QM ES ++ +H NTLN+L
Sbjct: 65 SVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFL-KRRLYTLQMGESTSVTDHINTLNTL 123
Query: 348 FLNL 359
F L
Sbjct: 124 FSQL 127
Score = 58.9 bits (141), Expect(2) = 2e-22
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNR--GTSLVFNDIAAAVLKKKIER 520
SQLT + I ++ERAELLLQSLPDSYDQLI+ +TN +L F+D+A A+L+++ R
Sbjct: 125 SQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRR 183
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 65.5 bits (158), Expect(2) = 5e-22
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRGTS--LVFNDIAAAVLKKKIER 520
SQLT L IE ERAELLLQSLPDSYDQLI+ LTN + LVF+D+AAAVL+++ R
Sbjct: 126 SQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEEESRR 184
Score = 64.7 bits (156), Expect(2) = 5e-22
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIAKGGDGKQHHSQCTLDI----- 167
KFNG FSLWKL++KA L + L + + + + D+
Sbjct: 9 KFNGKNFSLWKLKVKAILRKDNC----LAAISERPVDFTDDKKWSEMNEDAMADLYLSIA 64
Query: 168 SGCGIYVREM-TAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNS 344
G + E TA EIW+ L +L EAKSLH++I L K + T +MSES ++ H NTLN+
Sbjct: 65 DGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFL-KRKLYTLRMSESTSVTEHLNTLNT 123
Query: 345 LFLNL 359
LF L
Sbjct: 124 LFSQL 128
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 69.7 bits (169), Expect(2) = 8e-22
Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KFNGNKFSLWKLRIKAFLHEGK----IV*RQLGTN*GKSLVIAKGGDGKQHHSQCTLDIS 170
KFNG+ FSLWKL+IKA L + I R K + H + +S
Sbjct: 9 KFNGSNFSLWKLKIKAILRKDNCLPAIDGRPADITDDKRKEMDDNAVANLHLAVADSVLS 68
Query: 171 GCGIYVREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSLF 350
+ TAK+IW+TL +L E KSLH+RI L K R T +MSES +M +H N LN++F
Sbjct: 69 SIA---EKKTAKKIWDTLIQLYEVKSLHNRIFL-KRRLYTFRMSESTSMPDHINNLNTMF 124
Query: 351 LNL 359
L
Sbjct: 125 AQL 127
Score = 59.7 bits (143), Expect(2) = 8e-22
Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRG--TSLVFNDIAAAVLKKKIER 520
+QL+ + TI E+ERAE+LLQSLPDSYDQL++ +TN L FND+A A+L+++ R
Sbjct: 125 AQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRR 183
>emb|CAJ76058.1| gag protein [Cucumis melo]
Length = 122
Score = 52.8 bits (125), Expect(4) = 1e-10
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = +3
Query: 201 AKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSLFLNL 359
AKEIW+ L KL EAKSLH++I L K + T +MS S M H NTLN+LF L
Sbjct: 53 AKEIWDHLIKLYEAKSLHNKIFL-KRKLYTLRMSGSTLMTEHMNTLNTLFSQL 104
Score = 32.0 bits (71), Expect(4) = 1e-10
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 94 TEGNHW**QKEEMESNTIANVHLTLVDAV--SMSEK*QPKKFGRH 222
T+ N W EM+ N +AN+HL LVD V S+ EK K+ H
Sbjct: 19 TDDNKW----NEMDGNAMANIHLALVDNVLSSIEEKKIAKEIWDH 59
Score = 25.4 bits (54), Expect(4) = 1e-10
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 350 SQLTMLEDTIEEHERAELLLQ 412
SQLT+L IE ++ AELLLQ
Sbjct: 102 SQLTLLGYKIEPNKHAELLLQ 122
Score = 20.8 bits (42), Expect(4) = 1e-10
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 62 RKNCLAAIRDKLREITGNSK 121
+ NCL AI + EIT ++K
Sbjct: 4 KDNCLEAIDKRPAEITDDNK 23
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 42.4 bits (98), Expect(2) = 1e-06
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = +3
Query: 3 KFNGN-KFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIAKGGDGK-QHHSQCTLDISGC 176
KF+G F LW++R+K L + I + L + + K + K Q + L +S
Sbjct: 13 KFDGTGNFVLWQMRLKDLLAQQGIS-KALEETMPEKMDAGKWEEMKAQAAATIRLSLSDS 71
Query: 177 GIY--VREMTAKEIWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHNNTLNSLF 350
+Y + E T+KEIW LT L +KSL S++ L K++ QM E + + H + N L
Sbjct: 72 VMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYL-KQQLYGLQMQEESDLRKHVDVFNQLV 130
Query: 351 LNL 359
++L
Sbjct: 131 VDL 133
Score = 35.8 bits (81), Expect(2) = 1e-06
Identities = 18/62 (29%), Positives = 38/62 (61%)
Frame = +2
Query: 335 FEFSISQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRGTSLVFNDIAAAVLKKKI 514
F + L+ L+ +++ ++A +LL SLP SY+ ++ ILT+ G + +I +++L + +
Sbjct: 126 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTH-GKDTIKTEIISSLLARDL 184
Query: 515 ER 520
R
Sbjct: 185 RR 186
>ref|XP_007038204.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
gi|508775449|gb|EOY22705.1| Transducin/WD40 repeat-like
superfamily protein [Theobroma cacao]
Length = 1029
Score = 44.3 bits (103), Expect(2) = 4e-06
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Frame = +3
Query: 3 KFNG-NKFSLWKLRIKAFLHEGKIV*RQLGTN*GKSLVIAKGGDG------KQHHSQCTL 161
KFNG N FSLW+++++A L + + L GK + + DG K+ HS L
Sbjct: 134 KFNGRNDFSLWRVKMRALLVQQGL----LKALKGKEHLPSNLSDGEKDDLMKKAHSVILL 189
Query: 162 DISGCGIYVREMTAKE----IWETLTKL*EAKSLHSRIDLHKERSCTQQMSESAAMANHN 329
+S +RE+T +E +W L + KSL +R+ + K+R T +MSE ++ H
Sbjct: 190 ALSD--EVLREVTDEESAAAVWFKLESIYMTKSLTNRLYM-KQRLYTLKMSEGTSVNTHI 246
Query: 330 NTLNSLFLNLR 362
+ N + L+L+
Sbjct: 247 DEFNRVILDLK 257
Score = 32.0 bits (71), Expect(2) = 4e-06
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 335 FEFSISQLTMLEDTIEEHERAELLLQSLPDSYDQLIMILTNRGTSLVFNDIAAAV----L 502
F I L ++ IE+ + A +LL LP SY+ + + +L F D+ A++ L
Sbjct: 249 FNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDVRASLNFKEL 308
Query: 503 KKKIERLQQRYQ 538
KKK+ ++ Q
Sbjct: 309 KKKVGGIRNENQ 320