BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00027053
         (573 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu...   114   2e-23
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I...   112   5e-23
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin...   112   7e-23
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I...   110   2e-22
ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phas...   110   3e-22
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr...   110   3e-22
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ...   110   3e-22
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri...   109   5e-22
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub...   108   8e-22
gb|AFK43162.1| unknown [Medicago truncatula]                          107   2e-21
emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]               107   2e-21
emb|CBI30093.3| unnamed protein product [Vitis vinifera]              107   2e-21
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I...   107   2e-21
ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group] g...   107   2e-21
gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing...   107   2e-21
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub...   107   2e-21
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I...   107   2e-21
ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836...   107   3e-21
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I...   105   7e-21
ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V sub...   105   9e-21

>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
           gi|550320761|gb|EEF05018.2| hypothetical protein
           POPTR_0016s03800g [Populus trichocarpa]
          Length = 243

 Score =  114 bits (285), Expect = 2e-23
 Identities = 50/88 (56%), Positives = 69/88 (78%)
 Frame = -1

Query: 570 LSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVAR 391
           L + K+E+FQ+TDLLVN+TKH+L PKH++L          KYS+ +KQ+PR+L+ DA++R
Sbjct: 155 LFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISR 214

Query: 390 YYGLEKGQVLKITSVGDVIGPHVTYRCV 307
           YYGLE+GQV+K+T  GD+ G HVTYRCV
Sbjct: 215 YYGLERGQVVKVTYDGDITGSHVTYRCV 242


>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 244

 Score =  112 bits (281), Expect = 5e-23
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKHVL PKH++L          KY++ +KQ+PRML+TDA+ARYYGL
Sbjct: 160 KVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLPRMLQTDAIARYYGL 219

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           E+GQV+K+T  G++   HVTYRCV
Sbjct: 220 ERGQVVKVTYTGEITQMHVTYRCV 243


>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
           gi|255627335|gb|ACU14012.1| unknown [Glycine max]
          Length = 237

 Score =  112 bits (280), Expect = 7e-23
 Identities = 52/84 (61%), Positives = 67/84 (79%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKHVL PKH++L          KY++ +KQ+PRML+TDA+ARYYGL
Sbjct: 153 KVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGL 212

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           E+GQV+K+T  G+V   HVTYRCV
Sbjct: 213 ERGQVVKVTYSGEVTQMHVTYRCV 236


>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
           gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           [Cucumis sativus]
          Length = 227

 Score =  110 bits (276), Expect = 2e-22
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKH L P H++L          +YS+ +KQ+PRML TDA+ARYYGL
Sbjct: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           EKGQV+K+T  GD+   H+TYRCV
Sbjct: 203 EKGQVVKVTYDGDMTRAHITYRCV 226


>ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
           gi|561035580|gb|ESW34110.1| hypothetical protein
           PHAVU_001G125200g [Phaseolus vulgaris]
          Length = 242

 Score =  110 bits (275), Expect = 3e-22
 Identities = 50/84 (59%), Positives = 67/84 (79%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKHVL PKH++L          K+++ +KQ+PRML+TDA+ARYYGL
Sbjct: 158 KVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQTDAIARYYGL 217

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           E+GQV+K+T  G++   HVTYRCV
Sbjct: 218 ERGQVVKVTYSGEITQMHVTYRCV 241


>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
           gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
           RNA polymerase V subunit 5A-like isoform X1 [Citrus
           sinensis] gi|557544341|gb|ESR55319.1| hypothetical
           protein CICLE_v10021999mg [Citrus clementina]
          Length = 236

 Score =  110 bits (274), Expect = 3e-22
 Identities = 51/88 (57%), Positives = 68/88 (77%)
 Frame = -1

Query: 570 LSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVAR 391
           L + KVE+FQ+TDLLVN+TKHVL PKH++L          KYS+ +KQ+PRML+ DA+A+
Sbjct: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207

Query: 390 YYGLEKGQVLKITSVGDVIGPHVTYRCV 307
           YYGLE+GQV+K+T  G++   HVTYRCV
Sbjct: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235


>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
           polymerase subunit, RPB5; RNA polymerase Rpb5,
           N-terminal [Medicago truncatula]
           gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
           I, II, and III subunit RPABC1 [Medicago truncatula]
          Length = 248

 Score =  110 bits (274), Expect = 3e-22
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN TKHVL PKH++L          KY + +KQ+PRML+TDA+ARYYGL
Sbjct: 164 KVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 223

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           ++GQV+K+T  G++   HVTYRCV
Sbjct: 224 QRGQVVKVTYTGEITQMHVTYRCV 247


>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 238

 Score =  109 bits (273), Expect = 5e-22
 Identities = 50/88 (56%), Positives = 65/88 (73%)
 Frame = -1

Query: 570 LSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVAR 391
           L + KVE+FQ+TDLLVN+TKHVL PKH++L           Y + +KQ+PR+L  DA+AR
Sbjct: 150 LFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIAR 209

Query: 390 YYGLEKGQVLKITSVGDVIGPHVTYRCV 307
           YYGLEKGQV+K+T  G++   HVTYRCV
Sbjct: 210 YYGLEKGQVVKVTYSGEITESHVTYRCV 237


>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
           tuberosum]
          Length = 227

 Score =  108 bits (271), Expect = 8e-22
 Identities = 52/87 (59%), Positives = 65/87 (74%)
 Frame = -1

Query: 567 SRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARY 388
           S  K E+FQ+TDLLVN+TKHVL PKHE+L          KY++ DKQ+PRM + DA+ARY
Sbjct: 140 SPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKYNLEDKQLPRMSQKDAIARY 199

Query: 387 YGLEKGQVLKITSVGDVIGPHVTYRCV 307
           YGLEKGQV+K+T   ++I  HVTYRCV
Sbjct: 200 YGLEKGQVVKVTYNNEIIETHVTYRCV 226


>gb|AFK43162.1| unknown [Medicago truncatula]
          Length = 248

 Score =  107 bits (268), Expect = 2e-21
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+ Q+TDLLVN TKHVL PKH++L          KY + +KQ+PRML+TDA+ARYYGL
Sbjct: 164 KVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 223

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           ++GQV+K+T  G++   HVTYRCV
Sbjct: 224 QRGQVVKVTYTGEITQMHVTYRCV 247


>emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
          Length = 206

 Score =  107 bits (268), Expect = 2e-21
 Identities = 50/86 (58%), Positives = 63/86 (73%)
 Frame = -1

Query: 564 RVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYY 385
           + KV++FQ TDLLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETDAVARYY
Sbjct: 120 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYY 179

Query: 384 GLEKGQVLKITSVGDVIGPHVTYRCV 307
           G +KG V+K+T  G++ G  V YRCV
Sbjct: 180 GFDKGTVVKVTYDGELTGKRVAYRCV 205


>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score =  107 bits (268), Expect = 2e-21
 Identities = 51/84 (60%), Positives = 64/84 (76%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           +VE FQ+TDLLVN+TKHVL PKH +L          KYS+ +KQ+PRML+ DA+ARYYGL
Sbjct: 246 QVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGL 305

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           EKGQV+K+   G++ G HVTYRCV
Sbjct: 306 EKGQVVKVIYNGEITGSHVTYRCV 329


>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 229

 Score =  107 bits (268), Expect = 2e-21
 Identities = 51/84 (60%), Positives = 64/84 (76%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           +VE FQ+TDLLVN+TKHVL PKH +L          KYS+ +KQ+PRML+ DA+ARYYGL
Sbjct: 145 QVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGL 204

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           EKGQV+K+   G++ G HVTYRCV
Sbjct: 205 EKGQVVKVIYNGEITGSHVTYRCV 228


>ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
           gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa
           Japonica Group] gi|125535725|gb|EAY82213.1| hypothetical
           protein OsI_37416 [Oryza sativa Indica Group]
           gi|125578454|gb|EAZ19600.1| hypothetical protein
           OsJ_35178 [Oryza sativa Japonica Group]
           gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza
           glaberrima]
          Length = 227

 Score =  107 bits (268), Expect = 2e-21
 Identities = 50/86 (58%), Positives = 63/86 (73%)
 Frame = -1

Query: 564 RVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYY 385
           + KV++FQ TDLLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETDAVARYY
Sbjct: 141 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYY 200

Query: 384 GLEKGQVLKITSVGDVIGPHVTYRCV 307
           G +KG V+K+T  G++ G  V YRCV
Sbjct: 201 GFDKGTVVKVTYDGELTGKRVAYRCV 226


>gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed [Oryza sativa Japonica Group]
          Length = 335

 Score =  107 bits (268), Expect = 2e-21
 Identities = 50/86 (58%), Positives = 63/86 (73%)
 Frame = -1

Query: 564 RVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYY 385
           + KV++FQ TDLLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETDAVARYY
Sbjct: 249 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYY 308

Query: 384 GLEKGQVLKITSVGDVIGPHVTYRCV 307
           G +KG V+K+T  G++ G  V YRCV
Sbjct: 309 GFDKGTVVKVTYDGELTGKRVAYRCV 334


>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
           tuberosum]
          Length = 227

 Score =  107 bits (267), Expect = 2e-21
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKHVL P+HE+L          KY++ +KQ+PRM + DA+ARYYGL
Sbjct: 143 KVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGL 202

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           EKGQV+K+T   ++I  HVTYRCV
Sbjct: 203 EKGQVVKVTYSSEIIETHVTYRCV 226


>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Solanum lycopersicum]
          Length = 227

 Score =  107 bits (267), Expect = 2e-21
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = -1

Query: 558 KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 379
           KVE+FQ+TDLLVN+TKHVL P+HE+L          KY++ +KQ+PRM + DA+ARYYGL
Sbjct: 143 KVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGL 202

Query: 378 EKGQVLKITSVGDVIGPHVTYRCV 307
           EKGQV+K+T   ++I  HVTYRCV
Sbjct: 203 EKGQVVKVTYSSEIIETHVTYRCV 226


>ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
           distachyon]
          Length = 468

 Score =  107 bits (266), Expect = 3e-21
 Identities = 50/86 (58%), Positives = 65/86 (75%)
 Frame = -1

Query: 564 RVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYY 385
           + KV++FQ+ +LLVNVTKHVL P+HE+L          KY+V D Q+PRMLETDA+ARYY
Sbjct: 382 KYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQLPRMLETDAIARYY 441

Query: 384 GLEKGQVLKITSVGDVIGPHVTYRCV 307
           GL KG VL++T  G++ G HVTYRC+
Sbjct: 442 GLGKGTVLRVTYDGELTGNHVTYRCI 467


>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Solanum lycopersicum]
          Length = 227

 Score =  105 bits (263), Expect = 7e-21
 Identities = 50/87 (57%), Positives = 64/87 (73%)
 Frame = -1

Query: 567 SRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARY 388
           S  K E+FQ+TDLLVN+TKHVL PKHE+L          KY++ +KQ+PRM + DA+ARY
Sbjct: 140 SPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKYNLEEKQLPRMSQKDAIARY 199

Query: 387 YGLEKGQVLKITSVGDVIGPHVTYRCV 307
           YGLEKGQV+K+T   ++I  H TYRCV
Sbjct: 200 YGLEKGQVVKVTYNNEIIETHATYRCV 226


>ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Oryza
           brachyantha]
          Length = 283

 Score =  105 bits (262), Expect = 9e-21
 Identities = 48/86 (55%), Positives = 64/86 (74%)
 Frame = -1

Query: 564 RVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYY 385
           ++KV++FQ+T+LLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETD VARYY
Sbjct: 197 KLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRMLETDPVARYY 256

Query: 384 GLEKGQVLKITSVGDVIGPHVTYRCV 307
           GL+KG V+K+    ++ G HV YRCV
Sbjct: 257 GLDKGTVVKVIYDSELTGNHVAYRCV 282