BLASTX nr result
ID: Cocculus22_contig00027034
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00027034
(363 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002527319.1| nucleoporin, putative [Ricinus communis] gi|... 94 3e-17
ref|XP_006465209.1| PREDICTED: nuclear pore complex protein Nup9... 93 3e-17
ref|XP_002271967.1| PREDICTED: nuclear pore complex protein Nup9... 92 6e-17
ref|XP_007220283.1| hypothetical protein PRUPE_ppa000667mg [Prun... 89 8e-16
ref|XP_006427580.1| hypothetical protein CICLE_v10024784mg [Citr... 88 1e-15
ref|XP_006894942.1| hypothetical protein AMTR_s00148p00018960 [A... 88 1e-15
gb|AAF14656.1|AC011713_4 Identical to gi|1297187 nucleoprotein 9... 87 2e-15
ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis t... 87 2e-15
gb|AAN03675.1|AF411838_1 putative nucleoporin PRECOZ [Arabidopsi... 87 2e-15
ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arab... 86 5e-15
ref|XP_006300673.1| hypothetical protein CARUB_v10019705mg [Caps... 85 1e-14
gb|EXB67202.1| Nuclear pore complex protein [Morus notabilis] 83 3e-14
ref|XP_006389822.1| hypothetical protein EUTSA_v10018057mg [Eutr... 82 6e-14
dbj|BAJ34529.1| unnamed protein product [Thellungiella halophila] 82 6e-14
ref|XP_007023385.1| Suppressor of auxin resistance 3 [Theobroma ... 82 1e-13
ref|XP_002303836.1| PRECOCIOUS family protein [Populus trichocar... 80 2e-13
ref|XP_004978394.1| PREDICTED: nuclear pore complex protein Nup9... 80 4e-13
ref|XP_004978405.1| PREDICTED: nuclear pore complex protein Nup9... 79 5e-13
ref|XP_004978404.1| PREDICTED: nuclear pore complex protein Nup9... 79 5e-13
ref|XP_004977671.1| PREDICTED: nuclear pore complex protein Nup9... 79 5e-13
>ref|XP_002527319.1| nucleoporin, putative [Ricinus communis]
gi|223533319|gb|EEF35071.1| nucleoporin, putative
[Ricinus communis]
Length = 1067
Score = 93.6 bits (231), Expect = 3e-17
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = +2
Query: 113 FKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVK 292
+KKR+ S + C SR+++ +LP LCS DY+MEPSL +L E IDPG+C RV
Sbjct: 44 YKKRRLSPNNDDVSCEISREIEC---SLPTLCSTDYYMEPSLTDLVAHELIDPGYCSRVP 100
Query: 293 DFTVGRIGYGSVRFLGETDVRWL 361
DF VGR+G+G V+FLG TD+RWL
Sbjct: 101 DFIVGRLGFGCVKFLGTTDLRWL 123
>ref|XP_006465209.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Citrus
sinensis]
Length = 1041
Score = 93.2 bits (230), Expect = 3e-17
Identities = 47/97 (48%), Positives = 62/97 (63%)
Frame = +2
Query: 71 IDEVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELG 250
+D + + N ++KR S + S C S + +LP+LCSPDY+ EP L +LG
Sbjct: 3 LDARTFASCNNIPQYRKRNISMNAYSLSCEISSENGD---SLPVLCSPDYYTEPLLNDLG 59
Query: 251 DQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
+E IDPG+ RV DFTVGR+GYG V+FLG TDVRWL
Sbjct: 60 KREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWL 96
>ref|XP_002271967.1| PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis
vinifera]
Length = 1041
Score = 92.4 bits (228), Expect = 6e-17
Identities = 47/83 (56%), Positives = 58/83 (69%)
Frame = +2
Query: 113 FKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVK 292
+K+RK S SSLC +V+A +LP L S Y+MEP LKEL +E +D G C RV+
Sbjct: 19 YKRRKISQKNVSSLCEVHGEVEA---SLPTLRSSGYYMEPCLKELAKRELMDSGFCSRVQ 75
Query: 293 DFTVGRIGYGSVRFLGETDVRWL 361
DFTVGR GYG V+FLG+TDVRWL
Sbjct: 76 DFTVGRFGYGRVKFLGDTDVRWL 98
>ref|XP_007220283.1| hypothetical protein PRUPE_ppa000667mg [Prunus persica]
gi|462416745|gb|EMJ21482.1| hypothetical protein
PRUPE_ppa000667mg [Prunus persica]
Length = 1042
Score = 88.6 bits (218), Expect = 8e-16
Identities = 43/82 (52%), Positives = 57/82 (69%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S++TG SLC ++ L LP L DY+ +PSLKEL +E+ DPG RV D
Sbjct: 17 KKRRISSNTGISLCETFSPLEGSLPYLPTLEEADYYTQPSLKELAAREYTDPGFSSRVLD 76
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FTVGR GYGS+++LG+TD+R L
Sbjct: 77 FTVGRFGYGSIKYLGKTDIRRL 98
>ref|XP_006427580.1| hypothetical protein CICLE_v10024784mg [Citrus clementina]
gi|557529570|gb|ESR40820.1| hypothetical protein
CICLE_v10024784mg [Citrus clementina]
Length = 1041
Score = 88.2 bits (217), Expect = 1e-15
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 71 IDEVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELG 250
+D + + N ++K S + S C S + +LP+LCSPDY+ EP L +L
Sbjct: 3 LDARTFASCNNIPQYRKGNISMNAYSLSCEISSENGD---SLPVLCSPDYYTEPLLNDLA 59
Query: 251 DQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
+E IDPG+ RV DFTVGR+GYG V+FLG TDVRWL
Sbjct: 60 KREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWL 96
>ref|XP_006894942.1| hypothetical protein AMTR_s00148p00018960 [Amborella trichopoda]
gi|548849589|gb|ERN08348.1| hypothetical protein
AMTR_s00148p00018960 [Amborella trichopoda]
Length = 1057
Score = 87.8 bits (216), Expect = 1e-15
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +2
Query: 110 PFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRV 289
P KKRK S L SR+ LP+L + DY+ PSL EL +E +D G+C RV
Sbjct: 3 PMKKRKTSE------VLVSRNASEMESILPVLLACDYYTVPSLSELAARECVDSGYCQRV 56
Query: 290 KDFTVGRIGYGSVRFLGETDVRWL 361
+DFTVGR+GYG V+FLGETDVRWL
Sbjct: 57 QDFTVGRLGYGVVKFLGETDVRWL 80
>gb|AAF14656.1|AC011713_4 Identical to gi|1297187 nucleoprotein 98 homolog from Arabidopsis
thaliana cosmid gb|U53501. EST gb|W43800 comes from this
gene [Arabidopsis thaliana] gi|1297187|gb|AAA98914.1|
Theoretical protein with similarity to protein encoded
by GenBank Accession Number U41815, nucleoporin 98
[Arabidopsis thaliana]
Length = 850
Score = 87.0 bits (214), Expect = 2e-15
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S D ++LC +S+++ + +LP+L SPDYF++P + EL ++E P +C RV D
Sbjct: 16 KKRRISLDGIAALCEHSKEI---IDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPD 72
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FT+GRIGYG +RFLG TDVR L
Sbjct: 73 FTIGRIGYGYIRFLGNTDVRRL 94
>ref|NP_178183.2| suppressor of auxin resistance 3 [Arabidopsis thaliana]
gi|75156731|sp|Q8LLD0.1|NUP96_ARATH RecName:
Full=Nuclear pore complex protein Nup96 homolog;
Short=AtNUP96; AltName: Full=Nucleoporin 96; AltName:
Full=Nucleoporin PRECOCIOUS; AltName: Full=Nucleoporin
PRECOZ; AltName: Full=Protein MODIFIER OF SNC1 3;
AltName: Full=Protein SUPPRESSOR OF AUXIN RESISTANCE 3
gi|22652299|gb|AAN03676.1|AF411839_1 putative
nucleoporin PRECOZ [Arabidopsis thaliana]
gi|61353788|gb|AAX44044.1| putative nucleoporin 96
[Arabidopsis thaliana] gi|332198315|gb|AEE36436.1|
suppressor of auxin resistance 3 [Arabidopsis thaliana]
Length = 1046
Score = 87.0 bits (214), Expect = 2e-15
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S D ++LC +S+++ + +LP+L SPDYF++P + EL ++E P +C RV D
Sbjct: 23 KKRRISLDGIAALCEHSKEI---IDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPD 79
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FT+GRIGYG +RFLG TDVR L
Sbjct: 80 FTIGRIGYGYIRFLGNTDVRRL 101
>gb|AAN03675.1|AF411838_1 putative nucleoporin PRECOZ [Arabidopsis thaliana]
Length = 1046
Score = 87.0 bits (214), Expect = 2e-15
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S D ++LC +S+++ + +LP+L SPDYF++P + EL ++E P +C RV D
Sbjct: 23 KKRRISLDGIAALCEHSKEI---IDSLPMLNSPDYFLKPCINELVEREIESPDYCSRVPD 79
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FT+GRIGYG +RFLG TDVR L
Sbjct: 80 FTIGRIGYGYIRFLGNTDVRRL 101
>ref|XP_002889279.1| hypothetical protein ARALYDRAFT_895920 [Arabidopsis lyrata subsp.
lyrata] gi|297335120|gb|EFH65538.1| hypothetical protein
ARALYDRAFT_895920 [Arabidopsis lyrata subsp. lyrata]
Length = 1045
Score = 85.9 bits (211), Expect = 5e-15
Identities = 44/95 (46%), Positives = 67/95 (70%)
Frame = +2
Query: 77 EVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQ 256
E+S+ N S KKR+ S D ++LC +S+++ + +LP+L SPDYF++P + +L ++
Sbjct: 11 EISSMARNLDSR-KKRRISLDGIAALCEHSKEI---IDSLPMLNSPDYFLKPCMNDLVER 66
Query: 257 EHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
E +P +C RV DFT+GRIGYG ++FLG TDVR L
Sbjct: 67 EIKNPDYCSRVPDFTIGRIGYGYIKFLGNTDVRRL 101
>ref|XP_006300673.1| hypothetical protein CARUB_v10019705mg [Capsella rubella]
gi|482569383|gb|EOA33571.1| hypothetical protein
CARUB_v10019705mg [Capsella rubella]
Length = 1046
Score = 84.7 bits (208), Expect = 1e-14
Identities = 45/97 (46%), Positives = 67/97 (69%)
Frame = +2
Query: 71 IDEVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELG 250
I ++S GN S KKR+ S D ++L +S+++ + +LP+L SPDYF++P + EL
Sbjct: 9 IPDISWMAGNLDSR-KKRRISLDGVTALSEHSKEI---IDSLPMLNSPDYFLKPCMNELI 64
Query: 251 DQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
++E +P +C RV DFT+GRIGYG ++FLG TDVR L
Sbjct: 65 EREIENPDYCSRVPDFTIGRIGYGYIKFLGNTDVRRL 101
>gb|EXB67202.1| Nuclear pore complex protein [Morus notabilis]
Length = 948
Score = 83.2 bits (204), Expect = 3e-14
Identities = 47/117 (40%), Positives = 70/117 (59%)
Frame = +2
Query: 11 LTGTSNGLFCHMRGNDPFGSIDEVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLR 190
++G S + C MR + GS + + + +KKR+ + SS R+++A
Sbjct: 8 VSGISGEVEC-MRSDISVGSTCAMDFAAEISNPEWKKRRIILNENSSSSEILREIEA--- 63
Query: 191 ALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
+LP L P+Y+MEP EL +E +DPG+C RV D T+GR GYGSV+++GETDVR L
Sbjct: 64 SLPTLHKPEYYMEPCFDELVQRELMDPGYCSRVPDLTIGRYGYGSVKYVGETDVRLL 120
>ref|XP_006389822.1| hypothetical protein EUTSA_v10018057mg [Eutrema salsugineum]
gi|557086256|gb|ESQ27108.1| hypothetical protein
EUTSA_v10018057mg [Eutrema salsugineum]
Length = 1042
Score = 82.4 bits (202), Expect = 6e-14
Identities = 42/82 (51%), Positives = 56/82 (68%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S D +C + +D+ +LP L SPDYF++PS+ EL +E +P +C RV D
Sbjct: 19 KKRRISLDANPVVCEHYKDIRD---SLPTLNSPDYFLKPSMNELVQRELENPDYCSRVPD 75
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FTVGRIGYG ++FLG TDVR L
Sbjct: 76 FTVGRIGYGYIKFLGCTDVRKL 97
>dbj|BAJ34529.1| unnamed protein product [Thellungiella halophila]
Length = 1042
Score = 82.4 bits (202), Expect = 6e-14
Identities = 42/82 (51%), Positives = 56/82 (68%)
Frame = +2
Query: 116 KKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKD 295
KKR+ S D +C + +D+ +LP L SPDYF++PS+ EL +E +P +C RV D
Sbjct: 19 KKRRISLDANPVVCEHYKDIRD---SLPTLNSPDYFLKPSMNELVQRELENPDYCSRVPD 75
Query: 296 FTVGRIGYGSVRFLGETDVRWL 361
FTVGRIGYG ++FLG TDVR L
Sbjct: 76 FTVGRIGYGYIKFLGCTDVRKL 97
>ref|XP_007023385.1| Suppressor of auxin resistance 3 [Theobroma cacao]
gi|508778751|gb|EOY26007.1| Suppressor of auxin
resistance 3 [Theobroma cacao]
Length = 1069
Score = 81.6 bits (200), Expect = 1e-13
Identities = 46/99 (46%), Positives = 58/99 (58%)
Frame = +2
Query: 65 GSIDEVSASGGNTCSPFKKRKASTDTGSSLCLYSRDVDACLRALPILCSPDYFMEPSLKE 244
G++ +V S +KKR ST T SR + +LP L S DY+MEPSLK+
Sbjct: 27 GTLFDVENCDLQITSLYKKRSLSTTTDFLSHYVSRKIK---ESLPSLHSSDYYMEPSLKD 83
Query: 245 LGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
+ E +DPG C R+ DF VGRIGYG V+F G TDVR L
Sbjct: 84 MVTLELMDPGFCSRIPDFVVGRIGYGCVKFFGNTDVRGL 122
>ref|XP_002303836.1| PRECOCIOUS family protein [Populus trichocarpa]
gi|222841268|gb|EEE78815.1| PRECOCIOUS family protein
[Populus trichocarpa]
Length = 1067
Score = 80.5 bits (197), Expect = 2e-13
Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Frame = +2
Query: 11 LTGTSNGLFCHMRGNDPFGSIDEVS--ASGGNTCSPFKKRKASTDTGSSLCLYSRDVDAC 184
+ G+SN + +R N FG+ E+ N+ +KKR+ S + C R V+A
Sbjct: 9 VAGSSNEI-PSIRSNLSFGTSCELDFEVETLNSEGQYKKRRTSLKS-EPRCEDFRMVEAL 66
Query: 185 LRALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
L P L S DY+MEP L +L E +DPG+C RV DFTVGR GYG V+FLG+TDVR L
Sbjct: 67 L---PTLRSVDYYMEPCLMDLAAGEVVDPGYCSRVLDFTVGRFGYGRVKFLGKTDVRRL 122
>ref|XP_004978394.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Setaria
italica]
Length = 227
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 188 RALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
R LP L DYFMEPSL+E +E +PG+C RVKDF VGR GYGS++FLGETDVR L
Sbjct: 82 RLLPKLLQEDYFMEPSLEEFAAKECGEPGYCSRVKDFVVGRHGYGSIKFLGETDVRGL 139
>ref|XP_004978405.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform X2
[Setaria italica]
Length = 915
Score = 79.3 bits (194), Expect = 5e-13
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 188 RALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
R LP L DYF EPSL+EL +E +PG+C RVKDF VGR GYGS++FLGETDVR L
Sbjct: 760 RLLPKLPQEDYFTEPSLEELAAKERGEPGYCSRVKDFVVGRHGYGSIKFLGETDVRGL 817
>ref|XP_004978404.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform X1
[Setaria italica]
Length = 919
Score = 79.3 bits (194), Expect = 5e-13
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 188 RALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
R LP L DYF EPSL+EL +E +PG+C RVKDF VGR GYGS++FLGETDVR L
Sbjct: 764 RLLPKLPQEDYFTEPSLEELAAKERGEPGYCSRVKDFVVGRHGYGSIKFLGETDVRGL 821
>ref|XP_004977671.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform X6
[Setaria italica]
Length = 916
Score = 79.3 bits (194), Expect = 5e-13
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 188 RALPILCSPDYFMEPSLKELGDQEHIDPGHCCRVKDFTVGRIGYGSVRFLGETDVRWL 361
R LP L DYF EPSL+EL +E +PG+C RVKDF VGR GYGS++FLGETDVR L
Sbjct: 761 RLLPKLPQEDYFTEPSLEELAAKERGEPGYCSRVKDFVVGRHGYGSIKFLGETDVRGL 818