BLASTX nr result
ID: Cocculus22_contig00026845
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00026845
(747 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I sub... 182 1e-43
ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I sub... 180 4e-43
ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub... 180 4e-43
ref|XP_007010837.1| Nuclear RNA polymerase A2 isoform 2 [Theobro... 175 1e-41
ref|XP_006601019.1| PREDICTED: probable DNA-directed RNA polymer... 174 3e-41
ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymer... 174 3e-41
ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I sub... 172 9e-41
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub... 172 9e-41
ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymer... 167 4e-39
ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citr... 167 4e-39
ref|XP_007133696.1| hypothetical protein PHAVU_011G201300g [Phas... 162 2e-37
ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putat... 160 6e-37
ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I sub... 159 1e-36
ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymer... 158 2e-36
ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I sub... 158 2e-36
ref|XP_003609884.1| DNA-directed RNA polymerase [Medicago trunca... 157 3e-36
ref|XP_004486056.1| PREDICTED: DNA-directed RNA polymerase I sub... 154 2e-35
ref|XP_002297732.2| DNA-directed RNA polymerase family protein [... 153 7e-35
gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase ... 151 3e-34
gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, pu... 151 3e-34
>ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
vinifera]
Length = 1142
Score = 182 bits (461), Expect = 1e-43
Identities = 84/95 (88%), Positives = 92/95 (96%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSDHHIADVCSLCGSILTT+IIQP K+AVREIGGLPPG PKKVTCHAC+TSK
Sbjct: 1048 LHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQTSK 1107
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETV+MPY+F++LAAELAAMN+KMTLQLSNGAGA
Sbjct: 1108 GMETVSMPYIFRFLAAELAAMNIKMTLQLSNGAGA 1142
>ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 719
Score = 180 bits (457), Expect = 4e-43
Identities = 82/93 (88%), Positives = 90/93 (96%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSDHHIADVCSLCGS+LT++ +QPPK+AVREIGGLPPG PK+VTCHACKTSK
Sbjct: 626 LHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSK 685
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
GMETVAMPYVFKYLAAELAAMN+KMTLQLS+GA
Sbjct: 686 GMETVAMPYVFKYLAAELAAMNIKMTLQLSSGA 718
>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 1173
Score = 180 bits (457), Expect = 4e-43
Identities = 82/93 (88%), Positives = 90/93 (96%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSDHHIADVCSLCGS+LT++ +QPPK+AVREIGGLPPG PK+VTCHACKTSK
Sbjct: 1080 LHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSK 1139
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
GMETVAMPYVFKYLAAELAAMN+KMTLQLS+GA
Sbjct: 1140 GMETVAMPYVFKYLAAELAAMNIKMTLQLSSGA 1172
>ref|XP_007010837.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma cacao]
gi|508727750|gb|EOY19647.1| Nuclear RNA polymerase A2
isoform 2 [Theobroma cacao]
Length = 1180
Score = 175 bits (444), Expect = 1e-41
Identities = 80/95 (84%), Positives = 90/95 (94%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGSILTT+I+QPPK+ VREIGGLPP PKKVTCHAC+TSK
Sbjct: 1086 LHDRLHTCSDYHIADVCSLCGSILTTSIVQPPKRVVREIGGLPPARAPKKVTCHACQTSK 1145
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+ MT+QL++GAGA
Sbjct: 1146 GMETVAMPYVFRYLAAELAAMNITMTIQLNSGAGA 1180
>ref|XP_006601019.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X2 [Glycine max]
Length = 1004
Score = 174 bits (441), Expect = 3e-41
Identities = 81/95 (85%), Positives = 89/95 (93%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGS+LTTT QP K+ VREIGGLPPG PKKVTCHAC+TSK
Sbjct: 908 LHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 967
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+KMTL+LS+GAGA
Sbjct: 968 GMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAGA 1002
>ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Glycine max]
Length = 1175
Score = 174 bits (441), Expect = 3e-41
Identities = 81/95 (85%), Positives = 89/95 (93%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGS+LTTT QP K+ VREIGGLPPG PKKVTCHAC+TSK
Sbjct: 1079 LHDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 1138
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+KMTL+LS+GAGA
Sbjct: 1139 GMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAGA 1173
>ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X2
[Glycine max]
Length = 1151
Score = 172 bits (437), Expect = 9e-41
Identities = 80/94 (85%), Positives = 88/94 (93%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGS+L TT IQP K+ VREIGGLPPG PKKVTCHAC+TSK
Sbjct: 1055 LHDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 1114
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAG 284
GMETVAMPYVF+YLAAELAAMN+KMTL+LS+GAG
Sbjct: 1115 GMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAG 1148
>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X1
[Glycine max]
Length = 1175
Score = 172 bits (437), Expect = 9e-41
Identities = 80/94 (85%), Positives = 88/94 (93%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGS+L TT IQP K+ VREIGGLPPG PKKVTCHAC+TSK
Sbjct: 1079 LHDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSK 1138
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAG 284
GMETVAMPYVF+YLAAELAAMN+KMTL+LS+GAG
Sbjct: 1139 GMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAG 1172
>ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Citrus sinensis]
Length = 1175
Score = 167 bits (423), Expect = 4e-39
Identities = 76/95 (80%), Positives = 86/95 (90%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+H+ADVCSLCGS+LT T I P K+A+REIGGLPP PKKVTCHAC+TSK
Sbjct: 1081 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1140
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+K+TLQL +GA A
Sbjct: 1141 GMETVAMPYVFRYLAAELAAMNIKITLQLGDGATA 1175
>ref|XP_006428126.1| hypothetical protein CICLE_v10024768mg [Citrus clementina]
gi|557530116|gb|ESR41366.1| hypothetical protein
CICLE_v10024768mg [Citrus clementina]
Length = 1082
Score = 167 bits (423), Expect = 4e-39
Identities = 76/95 (80%), Positives = 86/95 (90%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+H+ADVCSLCGS+LT T I P K+A+REIGGLPP PKKVTCHAC+TSK
Sbjct: 988 LHDRLHTCSDYHVADVCSLCGSVLTATFIHPQKRAIREIGGLPPARAPKKVTCHACQTSK 1047
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+K+TLQL +GA A
Sbjct: 1048 GMETVAMPYVFRYLAAELAAMNIKITLQLGDGATA 1082
>ref|XP_007133696.1| hypothetical protein PHAVU_011G201300g [Phaseolus vulgaris]
gi|561006696|gb|ESW05690.1| hypothetical protein
PHAVU_011G201300g [Phaseolus vulgaris]
Length = 1180
Score = 162 bits (409), Expect = 2e-37
Identities = 76/98 (77%), Positives = 89/98 (90%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIP-----KKVTCHA 167
LHDRLHTCSD+HIADVCSLCGS+L+TT IQP K+ VR+IGGLPPG +P KKV+CHA
Sbjct: 1079 LHDRLHTCSDYHIADVCSLCGSMLSTTFIQPQKRPVRQIGGLPPGRLPPGRAAKKVSCHA 1138
Query: 168 CKTSKGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
C+TSKGMETVAMPYVF+YLAAELAAMN+KMTL+L++GA
Sbjct: 1139 CQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLNDGA 1176
>ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I
subunit, putative [Ricinus communis]
Length = 1159
Score = 160 bits (404), Expect = 6e-37
Identities = 74/93 (79%), Positives = 83/93 (89%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGSILTT+ IQ K+ VR+IGGLPP PKKV CH+C+TSK
Sbjct: 1065 LHDRLHTCSDYHIADVCSLCGSILTTSFIQTQKRVVRDIGGLPPVGAPKKVACHSCQTSK 1124
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
GMETVAMPYVF+YLAAELAAMN+KM +QLS GA
Sbjct: 1125 GMETVAMPYVFRYLAAELAAMNIKMNVQLSGGA 1157
>ref|XP_004300118.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
vesca subsp. vesca]
Length = 1171
Score = 159 bits (401), Expect = 1e-36
Identities = 76/95 (80%), Positives = 85/95 (89%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGSILTT+ +QPP + V EI G+PP PKKVTCHACKTSK
Sbjct: 1078 LHDRLHTCSDYHIADVCSLCGSILTTSSVQPPVR-VCEIPGMPPMRAPKKVTCHACKTSK 1136
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+K+ LQLSN +GA
Sbjct: 1137 GMETVAMPYVFRYLAAELAAMNIKLNLQLSNASGA 1171
>ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Cicer arietinum]
gi|502078798|ref|XP_004486058.1| PREDICTED: probable
DNA-directed RNA polymerase I subunit RPA2-like isoform
X2 [Cicer arietinum]
Length = 1177
Score = 158 bits (399), Expect = 2e-36
Identities = 71/92 (77%), Positives = 84/92 (91%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCS+CGS+LTTT QP K+ VREIGGLPP P+KVTCHAC++SK
Sbjct: 1083 LHDRLHTCSDYHIADVCSICGSMLTTTFQQPRKRPVREIGGLPPARAPRKVTCHACQSSK 1142
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNG 278
GME VAMPY+F+YLAAELAAMN+KMTL+L++G
Sbjct: 1143 GMEKVAMPYIFRYLAAELAAMNIKMTLKLTDG 1174
>ref|XP_004307166.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Fragaria
vesca subsp. vesca]
Length = 1169
Score = 158 bits (399), Expect = 2e-36
Identities = 76/95 (80%), Positives = 84/95 (88%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCSLCGSILTT+ +QP + VREI G+PP PKKVTCHACKTSK
Sbjct: 1076 LHDRLHTCSDYHIADVCSLCGSILTTSSVQP-QVPVREIPGMPPMRAPKKVTCHACKTSK 1134
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAGA 287
GMETVAMPYVF+YLAAELAAMN+K+ LQLSN GA
Sbjct: 1135 GMETVAMPYVFRYLAAELAAMNIKLNLQLSNATGA 1169
>ref|XP_003609884.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355510939|gb|AES92081.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1341
Score = 157 bits (398), Expect = 3e-36
Identities = 71/93 (76%), Positives = 85/93 (91%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCS+CGS+L+TT I+P K+ VR+I G+P P+KVTCHAC+TSK
Sbjct: 1242 LHDRLHTCSDYHIADVCSICGSMLSTTFIEPQKRPVRDIPGIPVRRAPRKVTCHACQTSK 1301
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
GMETVAMPY+F+YLAAELAAMN+KMTL+LSNGA
Sbjct: 1302 GMETVAMPYIFRYLAAELAAMNIKMTLKLSNGA 1334
>ref|XP_004486056.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cicer
arietinum]
Length = 336
Score = 154 bits (390), Expect = 2e-35
Identities = 70/92 (76%), Positives = 83/92 (90%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCS+CGS+LTTT QP K+ VREIGGL P P+KVTCHAC++SK
Sbjct: 242 LHDRLHTCSDYHIADVCSICGSMLTTTFQQPRKRPVREIGGLRPARAPRKVTCHACQSSK 301
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNG 278
GME VAMPY+F+YLAAELAAMN+KMTL+L++G
Sbjct: 302 GMEKVAMPYIFRYLAAELAAMNIKMTLKLTDG 333
>ref|XP_002297732.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550346693|gb|EEE82537.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1117
Score = 153 bits (386), Expect = 7e-35
Identities = 72/93 (77%), Positives = 83/93 (89%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQPPKKAVREIGGLPPGSIPKKVTCHACKTSK 182
LHDRLHTCSD+HIADVCS+CGSILTT QP ++ VR+IGGLPP PKKV CHAC+TSK
Sbjct: 1026 LHDRLHTCSDYHIADVCSICGSILTTHY-QPQRRIVRDIGGLPPVKAPKKVVCHACQTSK 1084
Query: 183 GMETVAMPYVFKYLAAELAAMNVKMTLQLSNGA 281
G+ETVAMPYVF+YLAAELAAMN+KMTL L++GA
Sbjct: 1085 GIETVAMPYVFRYLAAELAAMNIKMTLHLNDGA 1117
>gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1233
Score = 151 bits (381), Expect = 3e-34
Identities = 71/95 (74%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCHACKTS 179
LHDRLHT SDHHIADVCSLCGS+LT++++ KK ++EIG LPPG PKKVTC++CKTS
Sbjct: 1136 LHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTS 1195
Query: 180 KGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAG 284
KGMETVAMPYVF+YLAAELA+MN+KMTLQLS+ G
Sbjct: 1196 KGMETVAMPYVFRYLAAELASMNIKMTLQLSDREG 1230
>gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, putative; 8546-1198 [Arabidopsis
thaliana]
Length = 1114
Score = 151 bits (381), Expect = 3e-34
Identities = 71/95 (74%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 LHDRLHTCSDHHIADVCSLCGSILTTTIIQ-PPKKAVREIGGLPPGSIPKKVTCHACKTS 179
LHDRLHT SDHHIADVCSLCGS+LT++++ KK ++EIG LPPG PKKVTC++CKTS
Sbjct: 1017 LHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTS 1076
Query: 180 KGMETVAMPYVFKYLAAELAAMNVKMTLQLSNGAG 284
KGMETVAMPYVF+YLAAELA+MN+KMTLQLS+ G
Sbjct: 1077 KGMETVAMPYVFRYLAAELASMNIKMTLQLSDREG 1111