BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00026342
         (370 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)...    44   5e-07
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera...    39   2e-06

>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
           gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
           (mitochondrion) [Phoenix dactylifera]
          Length = 875

 Score = 44.3 bits (103), Expect(2) = 5e-07
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = -1

Query: 244 INSDYYNVPVTRDESVSAYQIMSYLLINE 158
           I S+Y+ VPVT+D S SAYQIMSYLL+N+
Sbjct: 472 IVSNYHKVPVTQDASASAYQIMSYLLLNQ 500



 Score = 35.0 bits (79), Expect(2) = 5e-07
 Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 366 WYKGKVSRR--SGNSLIKLAVSAREPFQFLAKVLS 268
           WY    S    S  SL+K AV A +PFQFLAK+LS
Sbjct: 435 WYNEHQSLMLASDESLMKFAVQASDPFQFLAKILS 469


>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
           gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
           polymerase. This is a family of single chain RNA
           polymerases; pfam00940 [Vitis vinifera]
           gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
           [Vitis vinifera]
          Length = 975

 Score = 39.3 bits (90), Expect(2) = 2e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
 Frame = -2

Query: 366 WYKGKVSRR--SGNSLIKLAVSAREPFQFLAKVLSLSP*VKTKLIVIII 226
           WY   VS +  S  S+I+LA+SA +P+QF++KVL +    K+ LI I I
Sbjct: 559 WYLDHVSMKASSAESIIELALSAADPYQFISKVLCIESNNKSNLIQIPI 607



 Score = 38.1 bits (87), Expect(2) = 2e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
 Frame = -1

Query: 238 SDYYNVPVTRDESVSAYQIMSYLLI-NELPLR---VPYL 134
           S+   +P+T+D S SAYQIMSY L+ N+L L+   +PY+
Sbjct: 600 SNLIQIPITQDASASAYQIMSYFLLDNDLALKTNLIPYI 638