BLASTX nr result

ID: Cocculus22_contig00025718 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00025718
         (986 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004172985.1| PREDICTED: THO complex subunit 4-like, parti...    37   2e-08

>ref|XP_004172985.1| PREDICTED: THO complex subunit 4-like, partial [Cucumis sativus]
          Length = 368

 Score = 37.0 bits (84), Expect(3) = 2e-08
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = -1

Query: 224 KPCYNLQSLYKIISMVLATKLREFLHFTISDS*FAFVKER 105
           +P   + SLYKIIS VLA++L++ L   I+DS  AFV+ R
Sbjct: 293 RPISLITSLYKIISKVLASRLKKVLPSIINDSQMAFVEGR 332



 Score = 34.7 bits (78), Expect(3) = 2e-08
 Identities = 14/36 (38%), Positives = 28/36 (77%)
 Frame = -2

Query: 109 REIIDAVFIANKAIEDY*CREKEGVGLMIELTKAHD 2
           R+I+DA+  A++A++++  R ++GV L ++L KA+D
Sbjct: 332 RQILDAILTASEAVDEWSLRGRKGVLLKLDLEKAYD 367



 Score = 33.9 bits (76), Expect(3) = 2e-08
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = -3

Query: 312 IFINGATNETYICLIKKKVNHGR 244
           IFIN   NETYICLI KK   GR
Sbjct: 266 IFINRRCNETYICLIPKKKEAGR 288


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