BLASTX nr result
ID: Cocculus22_contig00025621
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00025621
(461 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 83 3e-14
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 80 4e-13
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 79 5e-13
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 78 1e-12
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 77 3e-12
gb|AAC24057.1| Contains similarity to reverse transcriptase-like... 77 3e-12
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 76 6e-12
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 74 2e-11
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 74 2e-11
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 74 3e-11
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 73 4e-11
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 73 5e-11
ref|XP_004149382.1| PREDICTED: putative ribonuclease H protein A... 72 6e-11
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 71 1e-10
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 70 2e-10
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 70 4e-10
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 69 5e-10
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 69 9e-10
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 67 2e-09
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 67 2e-09
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 83.2 bits (204), Expect = 3e-14
Identities = 40/101 (39%), Positives = 61/101 (60%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+V+ K+ +I I+ D FA WSGL ++ KS ++ +GL+A + FS G L
Sbjct: 708 MVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQL 767
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPLI+ +L CLPL++ + ++ SW S LS+A
Sbjct: 768 PVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYA 808
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 79.7 bits (195), Expect = 4e-13
Identities = 35/101 (34%), Positives = 62/101 (61%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+++ K+ +I ++ + FA WSGL ++ KS ++ +G+ A++ + F G L
Sbjct: 596 MILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKL 655
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPL+S +L CLPL++ + K+++W S LS+A
Sbjct: 656 PVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFA 696
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -3
Query: 261 QAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPLISAKLG 82
+ +D+FASWSGL VNK KS+++ +GLN +E AA GF G LP++YLGLPL++ KL
Sbjct: 717 ETLDDFASWSGLKVNKDKSHLYLAGLNQ-LESNANAAYGFPIGTLPIRYLGLPLMNRKLR 775
Query: 81 MYHCLPLVDMMVSKLQSWKSYLLSWA 4
+ PL++ + ++ +SW + LS+A
Sbjct: 776 IAEYEPLLEKITARFRSWVNKCLSFA 801
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 78.2 bits (191), Expect = 1e-12
Identities = 36/101 (35%), Positives = 65/101 (64%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
++ K ++ ++++++FA WSGL +N K+ ++ +GL+ + D+ +A+ GF G L
Sbjct: 599 MIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDS-MASYGFKLGSL 657
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPL+S KL + PL++ + ++ SW LLS+A
Sbjct: 658 PVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFA 698
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 76.6 bits (187), Expect = 3e-12
Identities = 36/92 (39%), Positives = 59/92 (64%)
Frame = -3
Query: 279 NITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPL 100
++ + A NF S S L N +S IF +G++ D+ L + FS G PV+YLG+PL
Sbjct: 539 SVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPL 598
Query: 99 ISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
I++KL M C PL+D + ++++SW++ +LS+A
Sbjct: 599 ITSKLRMQDCSPLLDRIETRIKSWENKVLSFA 630
>gb|AAC24057.1| Contains similarity to reverse transcriptase-like protein
gb|2244803 from A. thaliana chromosome 4 contig
gb|Z97336 [Arabidopsis thaliana]
Length = 404
Score = 76.6 bits (187), Expect = 3e-12
Identities = 36/101 (35%), Positives = 61/101 (60%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+V+ K+ +I ++ ++FA WSGL ++ KS +F +G +A T + FS G L
Sbjct: 1 MVLSDGKIRSIDGVVRVFNDFALWSGLRISMEKSTLFLAGTSATAHQTITSTYPFSVGTL 60
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPL++ +L LPL++ + ++ SW + LS+A
Sbjct: 61 PVRYLGLPLVNKRLSAADYLPLLEKIRQRIGSWTARFLSFA 101
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 75.9 bits (185), Expect = 6e-12
Identities = 38/92 (41%), Positives = 53/92 (57%)
Frame = -3
Query: 279 NITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPL 100
+I I+A F+ +GL +N K +F GLN +GF G LPV+YLG+PL
Sbjct: 191 SIKMIIKAFSFFSKSTGLQINPAKCKVFCGGLNCDSIQVITKITGFEEGTLPVRYLGVPL 250
Query: 99 ISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
KL ++H LPLV+ +V K++ W S LLS A
Sbjct: 251 SCKKLNVHHYLPLVEKIVGKIRHWSSKLLSIA 282
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = -3
Query: 261 QAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPLISAKLG 82
+ +D+FA WSGL VNK KS +F +GL+ + T AA GF G P++YLGLPL+ KL
Sbjct: 577 ETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS-AAYGFPAGTFPIRYLGLPLMCRKLR 635
Query: 81 MYHCLPLVDMMVSKLQSWKSYLLSWA 4
+ PL++ + ++L+SW S LS+A
Sbjct: 636 IADYGPLLEKLSARLRSWVSKALSFA 661
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = -3
Query: 261 QAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPLISAKLG 82
+ +D+FA WSGL VNK KS +F +GL+ + T AA GF G P++YLGLPL+ KL
Sbjct: 577 ETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS-AAYGFPAGTFPIRYLGLPLMCRKLR 635
Query: 81 MYHCLPLVDMMVSKLQSWKSYLLSWA 4
+ PL++ + ++L+SW S LS+A
Sbjct: 636 IADYGPLLEKLSARLRSWVSKALSFA 661
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 73.6 bits (179), Expect = 3e-11
Identities = 35/101 (34%), Positives = 60/101 (59%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+V+ K+ +I ++ + FA SGL ++ KS ++F+GL+ +A F+ G L
Sbjct: 90 MVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTL 149
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPL++ +L LPL++ + K+ SW + LS+A
Sbjct: 150 PVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGSWSARFLSYA 190
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 73.2 bits (178), Expect = 4e-11
Identities = 35/92 (38%), Positives = 57/92 (61%)
Frame = -3
Query: 279 NITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPL 100
++ ++A ++F+ +GL VN K ++ +G++A + L SGF G LP KYLG+P+
Sbjct: 88 SVGMMMRAYESFSKATGLLVNPQKCSLLCAGIDAVTKREILEVSGFQEGQLPFKYLGVPV 147
Query: 99 ISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
S KL H PL+D +V K++ W + LLS+A
Sbjct: 148 TSKKLSTIHYSPLIDKIVGKIKHWTARLLSYA 179
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 72.8 bits (177), Expect = 5e-11
Identities = 34/101 (33%), Positives = 57/101 (56%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
L+ + +G++ + + F GLHVN K NI+ ++ +++ L SGF G +
Sbjct: 521 LLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQLLLISGFKEGKM 580
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
P +YLG+PL S KL + H L+D +V ++ W + LLS+A
Sbjct: 581 PFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYA 621
>ref|XP_004149382.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 268
Score = 72.4 bits (176), Expect = 6e-11
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 306 LVILKAKLGNITSFI-QAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGF 130
L+I A + SFI + + F SGL N+GKS+IF G+N++ A FS G
Sbjct: 37 LMIFCAADNHSMSFIKETIQRFGELSGLFANRGKSSIFLVGVNSSKASWLAANMDFSIGH 96
Query: 129 LPVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWAS 1
LPV++LGLPL+S +L C PL+ + S ++SW S + WAS
Sbjct: 97 LPVRHLGLPLLSGRLRSSDCDPLIQRITSHIRSW-SLQVYWAS 138
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 71.2 bits (173), Expect = 1e-10
Identities = 39/113 (34%), Positives = 61/113 (53%)
Frame = -3
Query: 342 ASEVRFLPSGISLVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDT 163
A ++ SG + +L+ K +D+F+ SGL++N K+ IF GLN T
Sbjct: 151 ADDIMIFTSGETRSLLEVK--------NTLDSFSRASGLYLNTEKTEIFLRGLNGTEAST 202
Query: 162 FLAASGFSHGFLPVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
A GF+ G+LPV+YLG+ L +L PL+D + +K+ SW + LS+A
Sbjct: 203 LCAVIGFTRGYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYLSYA 255
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 70.5 bits (171), Expect = 2e-10
Identities = 32/82 (39%), Positives = 57/82 (69%)
Frame = -3
Query: 249 NFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFLPVKYLGLPLISAKLGMYHC 70
+FA++SGL+++ KS +F + +++ + LA F G LPV+YLGLPL++ ++ + C
Sbjct: 982 DFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADC 1041
Query: 69 LPLVDMMVSKLQSWKSYLLSWA 4
LPL++ + S++ SWK+ LS+A
Sbjct: 1042 LPLLEKIRSRISSWKNRFLSYA 1063
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 69.7 bits (169), Expect = 4e-10
Identities = 31/99 (31%), Positives = 59/99 (59%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
L+ + + ++ + ++ F++ +GL VN K I+F G++ ++ S + G L
Sbjct: 521 LLFCRGDVMSVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTKNKIQQISSYEEGQL 580
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLS 10
PV+YLG+PL S KL + + LPL+D + ++++ W S LL+
Sbjct: 581 PVRYLGVPLTSKKLNIKYYLPLIDKITTRIRHWTSKLLN 619
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/101 (32%), Positives = 56/101 (55%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+++ + +I I+ D F+ WSGL ++ KS IF +GL++ F G L
Sbjct: 261 MILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGEL 320
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
P++YLGLPL++ +L PL++ + ++ SW S LS+A
Sbjct: 321 PIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFA 361
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 68.6 bits (166), Expect = 9e-10
Identities = 34/101 (33%), Positives = 59/101 (58%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
+V + + ++ I FA SGLH++ KS ++ +G++ + L+A F+ G L
Sbjct: 281 MVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQL 340
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLGLPL++ ++ PL+D + SK+ SW + LS+A
Sbjct: 341 PVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/101 (35%), Positives = 54/101 (53%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
LV +I + +D+F SGL +N+ K+ + G N A + G +HG L
Sbjct: 745 LVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSL 804
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLG+PL+S K+ PLVD + S+ SW + LS+A
Sbjct: 805 PVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFA 845
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/101 (35%), Positives = 54/101 (53%)
Frame = -3
Query: 306 LVILKAKLGNITSFIQAMDNFASWSGLHVNKGKSNIFFSGLNAAMEDTFLAASGFSHGFL 127
LV +I + +D+F SGL +N+ K+ + G N A + G +HG L
Sbjct: 702 LVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSL 761
Query: 126 PVKYLGLPLISAKLGMYHCLPLVDMMVSKLQSWKSYLLSWA 4
PV+YLG+PL+S K+ PLVD + S+ SW + LS+A
Sbjct: 762 PVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFA 802