BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00025476
         (906 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]         170   7e-60
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v...   171   2e-58
ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]...   107   5e-32
gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]            110   1e-30
gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]                      111   3e-30
gb|ABW80581.1| polyprotein [Dahlia mosaic virus]                      110   4e-30
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]                  110   4e-30
gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]            108   2e-29
gb|AEA39176.1| polyprotein [Dahlia mosaic virus]                      108   2e-29
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote...   109   2e-29
emb|CAH68829.1| polyprotein [Carnation etched ring virus]             107   1e-28
emb|CAD79320.2| polyprotein [Carnation etched ring virus]             107   1e-28
dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]      113   4e-28
dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]...   112   5e-28
sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Inclu...   114   2e-27
dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]      113   2e-27
dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]      113   2e-27
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]      115   2e-27
ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic prote...   100   2e-27
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu...   114   3e-27

>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
          Length = 699

 Score =  170 bits (430), Expect(2) = 7e-60
 Identities = 79/126 (62%), Positives = 102/126 (80%), Gaps = 3/126 (2%)
 Frame = +2

Query: 344 FSSDEEIDVEQQSKV---EEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMC 514
           F +DE+ +++Q+ +    EE  ++L  TNPNSIYI+G FYFKGYKKY LD+Y+DTGASMC
Sbjct: 19  FLTDEDFNLQQEDESVESEERFSTLTKTNPNSIYIKGNFYFKGYKKYSLDLYVDTGASMC 78

Query: 515 TANKHVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGD 694
           TANKHVIPEEFWV+AK PI+A+ AND I+  +KVAE +QVQI+  T +IPT+YQ  T+GD
Sbjct: 79  TANKHVIPEEFWVNAKNPIKARIANDSIITFNKVAELVQVQIADETFIIPTMYQATTKGD 138

Query: 695 ITLGNN 712
           IT+GNN
Sbjct: 139 ITIGNN 144



 Score = 88.6 bits (218), Expect(2) = 7e-60
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENVVPV 893
           CRLYEPF QYKD++TFH N   +S KKV KA+FHG PGFL+SK++GS +P   PEN+ PV
Sbjct: 146 CRLYEPFVQYKDMITFHKNGKAISTKKVTKAYFHGLPGFLESKKIGSNIPTPNPENITPV 205


>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
           gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
           banding virus]
          Length = 708

 Score =  171 bits (432), Expect(2) = 2e-58
 Identities = 84/122 (68%), Positives = 97/122 (79%)
 Frame = +2

Query: 347 SSDEEIDVEQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANK 526
           + DEE  +E     E F ++L  TNPNSIYIRG FYFKGYKKY LD+Y+DTGASMCTANK
Sbjct: 31  NEDEEQLLESVDSEERF-STLTKTNPNSIYIRGNFYFKGYKKYSLDLYVDTGASMCTANK 89

Query: 527 HVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLG 706
           HVIPEEFWV+AK PIRA+ AND IM  +KVAE +QVQI+  T +IPTLYQ  T+GDITLG
Sbjct: 90  HVIPEEFWVNAKNPIRARIANDSIMTFNKVAELMQVQIADETFIIPTLYQATTKGDITLG 149

Query: 707 NN 712
           NN
Sbjct: 150 NN 151



 Score = 83.2 bits (204), Expect(2) = 2e-58
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENVVPV 893
           CRLYEPF QYKD++TFH +   VS KKV KA+FHG PGFL+SK+VGS+     PEN+ PV
Sbjct: 153 CRLYEPFVQYKDMITFHKDGRAVSTKKVTKAYFHGLPGFLESKKVGSSTSTPNPENITPV 212


>ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]
           gi|401620160|gb|AFP95350.1| reverse transcriptase
           [Soybean Putnam virus]
          Length = 699

 Score =  107 bits (268), Expect(2) = 5e-32
 Identities = 51/103 (49%), Positives = 71/103 (68%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           LN TNPNSIY++G   F GYK+  L  ++DTGASMC A+KHVIPEE W ++   I  KTA
Sbjct: 41  LNSTNPNSIYVKGILKFSGYKQLELHCFVDTGASMCVASKHVIPEEHWENSSRHISVKTA 100

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNNL 715
           N  ++ + KV + +++ ++G    IPT+YQ E E D+ LGNN+
Sbjct: 101 NG-LVTLTKVCKNVKIMLAGELFHIPTIYQQEVEIDLILGNNI 142



 Score = 57.8 bits (138), Expect(2) = 5e-32
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +3

Query: 717 RLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENVVPVK 896
           +L+EPF Q+ D +  H +   V+I KV KA++HG+PG+L+S +  S  P   P N+ PVK
Sbjct: 144 QLHEPFVQFTDRIIIHKDGEPVTIGKVFKAYYHGKPGYLESMKKNSKKPVPSPLNITPVK 203


>gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]
          Length = 825

 Score =  110 bits (276), Expect(2) = 1e-30
 Identities = 54/116 (46%), Positives = 73/116 (62%)
 Frame = +2

Query: 365 DVEQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEE 544
           D + Q K E  +A  NITNPNSIYI+G+ + K YK   L  Y+DTGAS+C A+KHVIP++
Sbjct: 167 DEQVQRKNESELAYSNITNPNSIYIKGKIFLKEYKTITLHCYVDTGASLCLASKHVIPDD 226

Query: 545 FWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            W +    I+   AN + + +DKV   + V  SG    IPT+YQ E+  D+ LGNN
Sbjct: 227 LWENTPKDIKVTVANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQESRIDLLLGNN 282



 Score = 49.7 bits (117), Expect(2) = 1e-30
 Identities = 23/57 (40%), Positives = 35/57 (61%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LY  F Q+ D ++FH N  M+ IKK+ KA   G+PGFL+S +  S +  +   N+
Sbjct: 284 CQLYGHFTQWLDRISFHLNHEMILIKKITKAFQIGKPGFLESMKKDSKIKQIPGTNI 340


>gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]
          Length = 806

 Score =  111 bits (277), Expect(2) = 3e-30
 Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 6/128 (4%)
 Frame = +2

Query: 347 SSDEEIDVEQQSKVEEF------IASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGAS 508
           SS  ++++E++   ++       +   NITNPNSIYI+G F+FKGYK   L  Y+DTGAS
Sbjct: 141 SSSHKMNMEKKDNNDQIHYCQNELVYSNITNPNSIYIKGNFFFKGYKTITLHCYVDTGAS 200

Query: 509 MCTANKHVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETE 688
           +C A++HVIPE+ W +    I+   AN +   +DKV   + V  SG    IPT+YQ E+ 
Sbjct: 201 LCLASRHVIPEDLWENTPKDIKVTIANQETTKLDKVCRNLIVYFSGEPFPIPTIYQQESG 260

Query: 689 GDITLGNN 712
            D+ LGNN
Sbjct: 261 IDLLLGNN 268



 Score = 48.1 bits (113), Expect(2) = 3e-30
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGS 854
           C+LY PF Q+ D ++FH N  M+ IKK+ KA   G+ GFL+S +  S
Sbjct: 270 CQLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDS 316


>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
          Length = 812

 Score =  110 bits (274), Expect(2) = 4e-30
 Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
 Frame = +2

Query: 344 FSSDEEIDVEQQSKV--EEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCT 517
           F+  E ID ++Q      E + S NITNPNSIYI+G+ + KGYK   L  Y+DTGAS+C 
Sbjct: 151 FNLRETIDNDEQVHCCQSELVYS-NITNPNSIYIKGKIFLKGYKTITLHCYVDTGASLCL 209

Query: 518 ANKHVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDI 697
           A+KHVIPE+ W +    I+   AN + + +DKV   + V  SG    IPT+YQ E+  D+
Sbjct: 210 ASKHVIPEDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDL 269

Query: 698 TLGNN 712
            LGNN
Sbjct: 270 LLGNN 274



 Score = 48.9 bits (115), Expect(2) = 4e-30
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LY PF Q+ D ++FH N  M+ IKK+ KA   G+ GFL+S +  S    +   N+
Sbjct: 276 CQLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDSKTKQIPGTNI 332


>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
          Length = 810

 Score =  110 bits (274), Expect(2) = 4e-30
 Identities = 54/114 (47%), Positives = 70/114 (61%)
 Frame = +2

Query: 371 EQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFW 550
           EQ    +  +   NITNPNSIYI+G F+ KGYK   L  Y+DTGAS+C A+KHVIPE+ W
Sbjct: 159 EQVHYCQSELVYSNITNPNSIYIKGNFFLKGYKTITLHCYVDTGASLCLASKHVIPEDLW 218

Query: 551 VSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            +    I+   AN + + +DKV   + V  SG    IP +YQ ET  D+ LGNN
Sbjct: 219 ENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPIIYQQETGIDLLLGNN 272



 Score = 48.9 bits (115), Expect(2) = 4e-30
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LY PF Q+ D ++FH N  M+ IKK+ KA   G+ GFL+S +  S    +   N+
Sbjct: 274 CQLYGPFTQWIDRISFHLNEEMILIKKITKAFQIGKTGFLESMKKDSKAKQIPGTNI 330


>gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]
          Length = 814

 Score =  108 bits (270), Expect(2) = 2e-29
 Identities = 51/101 (50%), Positives = 67/101 (66%)
 Frame = +2

Query: 410 NITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTAN 589
           NITNPNSIYI+G+ + KGYK   L  Y+DTGAS+C A+KHVIPE+ W +    I+   AN
Sbjct: 176 NITNPNSIYIKGKIFLKGYKTITLHCYVDTGASLCLASKHVIPEDLWENTPKDIKVTIAN 235

Query: 590 DQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            + + +DKV   + V  SG    IPT+YQ E+  D+ LGNN
Sbjct: 236 QETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDLLLGNN 276



 Score = 48.1 bits (113), Expect(2) = 2e-29
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGS 854
           C+LY PF Q+ D ++FH N  M+ IKK+ KA   G+ GFL+S +  S
Sbjct: 278 CQLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDS 324


>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
          Length = 808

 Score =  108 bits (270), Expect(2) = 2e-29
 Identities = 51/101 (50%), Positives = 67/101 (66%)
 Frame = +2

Query: 410 NITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTAN 589
           NITNPNSIYI+G+ + KGYK   L  Y+DTGAS+C A++HVIPEE W +    I+   AN
Sbjct: 170 NITNPNSIYIKGKIFLKGYKTITLHCYVDTGASLCLASRHVIPEELWENTPKDIKVTIAN 229

Query: 590 DQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            + + +DKV   + V  SG    IPT+YQ E+  D+ LGNN
Sbjct: 230 QETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDLLLGNN 270



 Score = 48.1 bits (113), Expect(2) = 2e-29
 Identities = 22/47 (46%), Positives = 31/47 (65%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGS 854
           C+LY PF Q+ D ++FH N  M+ IKK+ KA   G+ GFL+S +  S
Sbjct: 272 CQLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDS 318


>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
           Reverse transcriptase] [Figwort mosaic virus]
           gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
           polyprotein; Includes: RecName: Full=Aspartic protease;
           Includes: RecName: Full=Endonuclease; Includes: RecName:
           Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
           unnamed protein product [Figwort mosaic virus]
          Length = 666

 Score =  109 bits (272), Expect(2) = 2e-29
 Identities = 47/102 (46%), Positives = 73/102 (71%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           LN+TNPNSIYI G+  F+GYK + +  Y+DTGAS+C A++++IPEE W ++   I+ K A
Sbjct: 25  LNVTNPNSIYIEGKLSFEGYKSFNIHCYVDTGASLCIASRYIIPEELWENSPKDIQVKIA 84

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           N +++ + KV + ++V+ +G +  IPT+YQ ET  D  +GNN
Sbjct: 85  NQELIKITKVCKNLKVKFAGKSFEIPTVYQQETGIDFLIGNN 126



 Score = 47.4 bits (111), Expect(2) = 2e-29
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           CRLY PF Q++D + FH    MV IKKV KA     P FL++ +  S    +   N+
Sbjct: 128 CRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSNPSFLENMKKDSKTEQIPGTNI 184


>emb|CAH68829.1| polyprotein [Carnation etched ring virus]
          Length = 656

 Score =  107 bits (266), Expect(2) = 1e-28
 Identities = 48/101 (47%), Positives = 72/101 (71%)
 Frame = +2

Query: 410 NITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTAN 589
           N TNPNSIY++G   F GYK+  L  Y+DTG+S+C A+K+VIPEE+W +A+ P+  K AN
Sbjct: 5   NRTNPNSIYVKGILKFPGYKQLELHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIAN 64

Query: 590 DQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            +I+ + KV  ++ +++ G   +IPTL+Q E+  D+ LGNN
Sbjct: 65  GKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGNN 105



 Score = 47.0 bits (110), Expect(2) = 1e-28
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKR 845
           C+LY PF QY D + FH N   V I K+ KA+ +G  GFL+S +
Sbjct: 107 CQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMK 150


>emb|CAD79320.2| polyprotein [Carnation etched ring virus]
          Length = 215

 Score =  107 bits (266), Expect(2) = 1e-28
 Identities = 48/101 (47%), Positives = 72/101 (71%)
 Frame = +2

Query: 410 NITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTAN 589
           N TNPNSIY++G   F GYK+  L  Y+DTG+S+C A+K+VIPEE+W +A+ P+  K AN
Sbjct: 5   NRTNPNSIYVKGILKFPGYKQLELHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIAN 64

Query: 590 DQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
            +I+ + KV  ++ +++ G   +IPTL+Q E+  D+ LGNN
Sbjct: 65  GKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGNN 105



 Score = 47.0 bits (110), Expect(2) = 1e-28
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKR 845
           C+LY PF QY D + FH N   V I K+ KA+ +G  GFL+S +
Sbjct: 107 CQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMK 150


>dbj|BAO53386.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 678

 Score =  113 bits (282), Expect(2) = 4e-28
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 16  MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIA 75

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + + KV + I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 76  DGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNN 117



 Score = 39.3 bits (90), Expect(2) = 4e-28
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ KA   G  GFLDS +  S      P N+
Sbjct: 119 CQLYEPFIQFTDRVIFTKNKTYPVHIAKLTKAVRIGTEGFLDSMKKRSKTQQPEPVNI 176


>dbj|BAO53393.1| reverse transcriptase [Cauliflower mosaic virus]
           gi|591288586|dbj|BAO53400.1| reverse transcriptase
           [Cauliflower mosaic virus]
          Length = 678

 Score =  112 bits (281), Expect(2) = 5e-28
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 16  MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPILVKIA 75

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + + KV + I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 76  DGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNN 117



 Score = 39.3 bits (90), Expect(2) = 5e-28
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ KA   G  GFLDS +  S      P N+
Sbjct: 119 CQLYEPFIQFTDRVIFTKNKTYPVHIAKLTKAVRVGTEGFLDSMKKRSKTQQPEPVNI 176


>sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase gi|331571|gb|AAA46358.1| reverse
           transcriptase [Cauliflower mosaic virus]
           gi|445598|prf||1909346E reverse transcriptase
          Length = 680

 Score =  114 bits (285), Expect(2) = 2e-27
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 17  MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIA 76

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + + KV + I + I G+   IPT+YQ E+  D  +GNN
Sbjct: 77  DGSSITISKVCKDIDLIIVGVIFKIPTVYQQESGIDFIIGNN 118



 Score = 35.8 bits (81), Expect(2) = 2e-27
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ +A   G  GFL+S +  S      P N+
Sbjct: 120 CQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNI 177


>dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score =  113 bits (283), Expect(2) = 2e-27
 Identities = 54/102 (52%), Positives = 72/102 (70%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 16  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIA 75

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + + KV + I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 76  DGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNN 117



 Score = 36.2 bits (82), Expect(2) = 2e-27
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ +A   G  GFL+S +  S      P N+
Sbjct: 119 CQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAMRVGTEGFLESMKKRSKTQQPEPVNI 176


>dbj|BAO53407.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score =  113 bits (282), Expect(2) = 2e-27
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 16  MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIA 75

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + + KV + I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 76  DGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNN 117



 Score = 36.6 bits (83), Expect(2) = 2e-27
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ +A   G  GFL+S +  S      P N+
Sbjct: 119 CQLYEPFIQFTDRVIFTKNKSYPVHIAKITRAVRVGTEGFLESMKKRSKTQQPEPVNI 176


>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  115 bits (287), Expect(2) = 2e-27
 Identities = 54/102 (52%), Positives = 73/102 (71%)
 Frame = +2

Query: 407 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           +NITNPNSIYI+G+FYFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRFYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           +   + ++KV   I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 78  DGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNN 119



 Score = 34.7 bits (78), Expect(2) = 2e-27
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTF-HFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F       V I K+ +A   G  GFL+S +  S      P N+
Sbjct: 121 CQLYEPFIQFTDRVIFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNI 178


>ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
           Reverse transcriptase] [Carnation etched ring virus]
           gi|130593|sp|P05400.1|POL_CERV RecName: Full=Enzymatic
           polyprotein; Includes: RecName: Full=Aspartic protease;
           Includes: RecName: Full=Endonuclease; Includes: RecName:
           Full=Reverse transcriptase gi|58863|emb|CAA28360.1|
           unnamed protein product [Carnation etched ring virus]
           gi|225356|prf||1301227E ORF 5
          Length = 659

 Score =  100 bits (250), Expect(2) = 2e-27
 Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +2

Query: 410 NITNPNSIYIRGQFYFKGYK-KYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 586
           N TNPNSIY++G   F GY+    L  Y+DTG+S+C A+K+VIPEE+W +A+ P+  K A
Sbjct: 5   NRTNPNSIYVKGILKFPGYQTNLDLHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIA 64

Query: 587 NDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           N +I+ + KV  ++ +++ G   +IPTL+Q E+  D+ LGNN
Sbjct: 65  NGKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGNN 106



 Score = 48.9 bits (115), Expect(2) = 2e-27
 Identities = 24/57 (42%), Positives = 33/57 (57%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFNVVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LY PF QY D + FH N   V I K+ KA+ +G  GFL+S +  S +    P N+
Sbjct: 108 CQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPINI 164


>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 679

 Score =  114 bits (285), Expect(2) = 3e-27
 Identities = 55/115 (47%), Positives = 80/115 (69%)
 Frame = +2

Query: 368 VEQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEF 547
           ++ Q+++E+    +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE 
Sbjct: 6   LKTQTQIEQV---MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEH 62

Query: 548 WVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGITVVIPTLYQVETEGDITLGNN 712
           WV+A+ PI  K A+   + + KV + I + I+G    IPT+YQ E+  D  +GNN
Sbjct: 63  WVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNN 117



 Score = 35.0 bits (79), Expect(2) = 3e-27
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 714 CRLYEPFAQYKDIVTFHFN-VVMVSIKKVLKAHFHGQPGFLDSKRVGSTLPALVPENV 884
           C+LYEPF Q+ D V F  N    V I K+ +A   G  GFL+S +  S      P N+
Sbjct: 119 CQLYEPFIQFTDRVIFTKNKSYPVHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNI 176