BLASTX nr result
ID: Cocculus22_contig00025284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00025284
(288 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007224687.1| hypothetical protein PRUPE_ppa025512mg, part... 55 2e-08
ref|XP_007216787.1| hypothetical protein PRUPE_ppa023788mg, part... 54 4e-08
ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297... 56 7e-08
gb|EEE50691.1| hypothetical protein OsJ_30951 [Oryza sativa Japo... 56 7e-08
gb|EEC66671.1| hypothetical protein OsI_32959 [Oryza sativa Indi... 56 7e-08
ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein A... 51 3e-07
gb|ABN07997.1| contains similarity to reverse trancriptase , rel... 54 6e-07
ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298... 58 2e-06
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 52 2e-06
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 57 2e-06
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 56 2e-06
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 51 2e-06
ref|XP_007207773.1| hypothetical protein PRUPE_ppa026368mg, part... 50 3e-06
ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein A... 57 3e-06
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 44 4e-06
ref|XP_007212800.1| hypothetical protein PRUPE_ppa020180mg [Prun... 50 4e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 50 5e-06
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 55 5e-06
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 47 5e-06
ref|XP_007212615.1| hypothetical protein PRUPE_ppa017091mg, part... 56 6e-06
>ref|XP_007224687.1| hypothetical protein PRUPE_ppa025512mg, partial [Prunus persica]
gi|462421623|gb|EMJ25886.1| hypothetical protein
PRUPE_ppa025512mg, partial [Prunus persica]
Length = 387
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +3
Query: 21 MLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAI 200
+L ++ ++ GRYLG+ + SK++ FE + +I + ++ W E+ LS A KE L+KA+
Sbjct: 285 ILQVQQNDGFGRYLGLNADFGASKQR-FFEEVRNKINAKLMGWSEQYLSQAEKEVLIKAV 343
Query: 201 PMAIPNY 221
MA+PNY
Sbjct: 344 AMAMPNY 350
Score = 29.6 bits (65), Expect(2) = 2e-08
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P CK++ +++N+W
Sbjct: 352 MSCFKLPINLCKEIEREIINYW 373
>ref|XP_007216787.1| hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
gi|462412937|gb|EMJ17986.1| hypothetical protein
PRUPE_ppa023788mg, partial [Prunus persica]
Length = 200
Score = 53.9 bits (128), Expect(2) = 4e-08
Identities = 27/73 (36%), Positives = 48/73 (65%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
K +L +L ++ + G+YLG+ T+ +S K+ +FE++ +I S ++ W ++ LS A KE
Sbjct: 106 KCQLAHILGVQQNGDFGKYLGLNTDFGVS-KRGVFEMVRRKIASKLMGWAKQYLSSAGKE 164
Query: 183 TLLKAIPMAIPNY 221
L+KA+ MA+ NY
Sbjct: 165 VLIKAMAMAMLNY 177
Score = 29.3 bits (64), Expect(2) = 4e-08
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P + CK++ + NFW
Sbjct: 179 MSCFKLPVSLCKEIERDIANFW 200
>ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297422 [Fragaria vesca
subsp. vesca]
Length = 1096
Score = 55.8 bits (133), Expect(2) = 7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
+++L +L +K +YLG+PTEL SK+K F + E+I W++K L++A KE
Sbjct: 497 QDELAAVLGVKRVEKHKKYLGLPTELSYSKEKA-FSFLCERIRKRTQGWRDKTLTIAGKE 555
Query: 183 TLLKAIPMAIPNY 221
L+KA+ +IP Y
Sbjct: 556 VLIKAVVQSIPTY 568
Score = 26.2 bits (56), Expect(2) = 7e-08
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 220 IMSCF*MPRTSCKQLVTKLVNFW 288
IMSCF +P+ C + + FW
Sbjct: 569 IMSCFELPKHMCSAMQRLMARFW 591
>gb|EEE50691.1| hypothetical protein OsJ_30951 [Oryza sativa Japonica Group]
Length = 697
Score = 55.8 bits (133), Expect(2) = 7e-08
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = +3
Query: 54 RYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIPMAIPNY 221
RYLG+P + SK KT FE + E+I I WKEK LS A KE L+KA+ AIP Y
Sbjct: 270 RYLGLPVFIGRSKAKT-FEYLKEKIWRCIQGWKEKFLSKAGKEILIKAVAQAIPTY 324
Score = 26.2 bits (56), Expect(2) = 7e-08
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF + ++ C +L + ++ FW
Sbjct: 326 MSCFYLTKSLCDELTSMILRFW 347
>gb|EEC66671.1| hypothetical protein OsI_32959 [Oryza sativa Indica Group]
Length = 697
Score = 55.8 bits (133), Expect(2) = 7e-08
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = +3
Query: 54 RYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIPMAIPNY 221
RYLG+P + SK KT FE + E+I I WKEK LS A KE L+KA+ AIP Y
Sbjct: 270 RYLGLPVFIGRSKAKT-FEYLKEKIWRCIQGWKEKFLSKAGKEILIKAVAQAIPTY 324
Score = 26.2 bits (56), Expect(2) = 7e-08
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF + ++ C +L + ++ FW
Sbjct: 326 MSCFYLTKSLCDELTSMILRFW 347
>ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 755
Score = 51.2 bits (121), Expect(2) = 3e-07
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +3
Query: 21 MLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAI 200
MLN+KA LG+YLG+PT SK + I + I I WK+ +LS A KE L+KA+
Sbjct: 210 MLNMKAVKDLGKYLGLPTIWSRSKVSAL-GYIRDTILKKIQGWKQGILSPAGKEILIKAV 268
Query: 201 PMAIPNY 221
+IP Y
Sbjct: 269 AASIPIY 275
Score = 28.9 bits (63), Expect(2) = 3e-07
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
M+CF P+T C Q+ + L FW
Sbjct: 277 MACFKFPKTLCNQINSALARFW 298
>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
truncatula]
Length = 407
Score = 53.9 bits (128), Expect(2) = 6e-07
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
K ++ L++K S+ + +YLG+PT+ SK++ F I+E+I WK+K LS +
Sbjct: 12 KEEIQKHLHVKISDGIQKYLGMPTQFGRSKEQD-FHFIMERIWKKHKGWKKKCLSFEGRG 70
Query: 183 TLLKAIPMAIPNYYV 227
L+KA+ AIP YY+
Sbjct: 71 VLIKAVAQAIPTYYM 85
Score = 25.0 bits (53), Expect(2) = 6e-07
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ C ++ + +FW
Sbjct: 85 MSCFMLPKGLCTKIEKAICSFW 106
>ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298860 [Fragaria vesca
subsp. vesca]
Length = 1164
Score = 57.8 bits (138), Expect = 2e-06
Identities = 27/78 (34%), Positives = 51/78 (65%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
+++L +L ++ + +YLG+PTEL SKK++ F+ I+++ + WK+K LS A KE
Sbjct: 692 QDRLASLLGVERVDKHDKYLGLPTELSYSKKES-FQYIMDKTRDKMKNWKDKTLSAAKKE 750
Query: 183 TLLKAIPMAIPNYYVLLL 236
++KA+ ++P Y + +L
Sbjct: 751 VMIKAVVQSVPTYVMSVL 768
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 52.0 bits (123), Expect(2) = 2e-06
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
+ +L +LNI G+YLG+P + KKK +F I++++ +W K LS A KE
Sbjct: 353 QTRLKTLLNIPNQGGGGKYLGLPEQFG-RKKKEMFNYIIDRVKERTASWSAKFLSPAGKE 411
Query: 183 TLLKAIPMAIPNY 221
LLK++ +A+P Y
Sbjct: 412 ILLKSVALAMPVY 424
Score = 25.4 bits (54), Expect(2) = 2e-06
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ ++ + L+NFW
Sbjct: 426 MSCFKLPQGIVSEIESLLMNFW 447
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 57.4 bits (137), Expect = 2e-06
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
K++L +LN++ + +YLGIP+ + KK IF+ ++++I + WKEKLLS A KE
Sbjct: 736 KDELTNILNMRQVDRHEKYLGIPS-ISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKE 794
Query: 183 TLLKAIPMAIPNY 221
LLK++ AIP Y
Sbjct: 795 VLLKSVIQAIPTY 807
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 55.8 bits (133), Expect(2) = 2e-06
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
K ++ LN++ RYLG+P + S+ K IF + E+I I WKEKLLS A KE
Sbjct: 988 KRAVMAALNMQRETTNERYLGLPVFVGRSRTK-IFSYLKERIWQRIQGWKEKLLSRAGKE 1046
Query: 183 TLLKAIPMAIPNY 221
L+KA+ AIP +
Sbjct: 1047 ILIKAVAQAIPTF 1059
Score = 21.2 bits (43), Expect(2) = 2e-06
Identities = 6/22 (27%), Positives = 11/22 (50%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
M CF + + C Q+ + +W
Sbjct: 1061 MGCFELTKDLCDQISKMIAKYW 1082
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 51.2 bits (121), Expect(2) = 2e-06
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
++KL +L I G+YLG+P + KKK +FE I++++ TW + LS A KE
Sbjct: 888 QSKLKQILEIPNQGGGGKYLGLPEQFG-RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKE 946
Query: 183 TLLKAIPMAIPNY 221
+LK++ +A+P Y
Sbjct: 947 IMLKSVALAMPVY 959
Score = 25.8 bits (55), Expect(2) = 2e-06
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ ++ + L+NFW
Sbjct: 961 MSCFKLPKGIVSEIESLLMNFW 982
>ref|XP_007207773.1| hypothetical protein PRUPE_ppa026368mg, partial [Prunus persica]
gi|462403415|gb|EMJ08972.1| hypothetical protein
PRUPE_ppa026368mg, partial [Prunus persica]
Length = 1060
Score = 50.1 bits (118), Expect(2) = 3e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +3
Query: 21 MLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAI 200
+LN+ YLG+PT +K+ +F+ + +++ I WKEKLLS A KE L+KA+
Sbjct: 441 VLNVPVVRCHENYLGLPTIAGKGRKQ-LFQHLKDKLWKHISGWKEKLLSRAGKEILIKAV 499
Query: 201 PMAIPNY 221
AIP Y
Sbjct: 500 LQAIPTY 506
Score = 26.6 bits (57), Expect(2) = 3e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ CK+L + FW
Sbjct: 508 MSCFRIPKGLCKELNGIMARFW 529
>ref|XP_004959141.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Setaria
italica]
Length = 950
Score = 56.6 bits (135), Expect = 3e-06
Identities = 31/75 (41%), Positives = 47/75 (62%)
Frame = +3
Query: 54 RYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIPMAIPNYYVLL 233
RYLG+P + S+ +T F + +++ I WKEKLLS A KETL+KA+ AIP+Y +
Sbjct: 324 RYLGLPVYMGRSRTQT-FAYLKDRVWKRIHGWKEKLLSKAGKETLIKAVAQAIPSYAMAC 382
Query: 234 LNAKDIMQATGDQVS 278
DI ++ D++S
Sbjct: 383 F---DITKSVSDEIS 394
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 44.3 bits (103), Expect(2) = 4e-06
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +3
Query: 51 GRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIPMAIPNY 221
G+YLG+P L SK+ +F I E++ S + W K LS KE LLK+I +A+P Y
Sbjct: 747 GKYLGLPECLSGSKRD-LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVY 802
Score = 32.0 bits (71), Expect(2) = 4e-06
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 220 IMSCF*MPRTSCKQLVTKLVNFW 288
+MSCF +P+ C++L T +++FW
Sbjct: 803 VMSCFKLPKNLCQKLTTVMMDFW 825
>ref|XP_007212800.1| hypothetical protein PRUPE_ppa020180mg [Prunus persica]
gi|462408665|gb|EMJ13999.1| hypothetical protein
PRUPE_ppa020180mg [Prunus persica]
Length = 1072
Score = 49.7 bits (117), Expect(2) = 4e-06
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +3
Query: 24 LNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIP 203
LN+ YLG+PT +K+ +F+ + +++ I WKEKLLS A KE L+KA+
Sbjct: 692 LNVPVVRCHENYLGLPTIAGKGRKQ-LFQHLKDKLWKHISGWKEKLLSRAGKEILIKAVL 750
Query: 204 MAIPNY 221
AIP Y
Sbjct: 751 QAIPTY 756
Score = 26.6 bits (57), Expect(2) = 4e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ CK+L + FW
Sbjct: 758 MSCFQIPKGLCKELNGIMARFW 779
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 50.1 bits (118), Expect(2) = 5e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
+++L +L I G+YLG+P + KKK +FE I++++ TW + LS A KE
Sbjct: 1114 QSRLKQILEIPNQGGGGKYLGLPEQFG-RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKE 1172
Query: 183 TLLKAIPMAIPNY 221
+LK++ +A+P Y
Sbjct: 1173 IMLKSVALAMPVY 1185
Score = 25.8 bits (55), Expect(2) = 5e-06
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P+ ++ + L+NFW
Sbjct: 1187 MSCFKLPKGIVSEIESLLMNFW 1208
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 54.7 bits (130), Expect(2) = 5e-06
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 3 KNKLIVMLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKE 182
K ++ LN++ +YLG+P + S+ K IF + E+I I WKEKLLS A KE
Sbjct: 961 KGAVMAALNMQRETTNEKYLGLPVFVGRSRTK-IFSYLKERIWQRIQGWKEKLLSRAGKE 1019
Query: 183 TLLKAIPMAIPNY 221
L+KA+ AIP +
Sbjct: 1020 ILIKAVAQAIPTF 1032
Score = 21.2 bits (43), Expect(2) = 5e-06
Identities = 6/22 (27%), Positives = 11/22 (50%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
M CF + + C Q+ + +W
Sbjct: 1034 MGCFELTKDLCDQISKMIAKYW 1055
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 47.4 bits (111), Expect(2) = 5e-06
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +3
Query: 21 MLNIKASNVLGRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAI 200
+L I+ G+YLG+P EL KKK +F I+++I L+W + LS A K T+LK++
Sbjct: 673 ILLIQKEGGQGKYLGLP-ELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSV 731
Query: 201 PMAIPNY 221
+P Y
Sbjct: 732 LSTMPTY 738
Score = 28.5 bits (62), Expect(2) = 5e-06
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 223 MSCF*MPRTSCKQLVTKLVNFW 288
MSCF +P + CK++ + L FW
Sbjct: 740 MSCFQLPLSLCKRIQSTLTRFW 761
>ref|XP_007212615.1| hypothetical protein PRUPE_ppa017091mg, partial [Prunus persica]
gi|462408480|gb|EMJ13814.1| hypothetical protein
PRUPE_ppa017091mg, partial [Prunus persica]
Length = 921
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = +3
Query: 51 GRYLGIPTELDLSKKKTIFEVILEQICSIILTWKEKLLSLASKETLLKAIPMAIPNY 221
G+YLG+PT SKK+ + + + E++C + WK+ LLS AS+E L+K + A+PNY
Sbjct: 597 GKYLGLPTMWGRSKKEAL-QFVREKLCRKLSGWKQSLLSQASREVLIKVVAQAVPNY 652