BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00025228
         (293 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...   103   3e-20
ref|XP_004228842.1| PREDICTED: pentatricopeptide repeat-containi...   103   3e-20
ref|XP_006364943.1| PREDICTED: pentatricopeptide repeat-containi...    98   1e-18
ref|XP_007222303.1| hypothetical protein PRUPE_ppa003920mg [Prun...    98   1e-18
ref|XP_002522400.1| pentatricopeptide repeat-containing protein,...    97   2e-18
ref|XP_007046138.1| Pentatricopeptide repeat (PPR) superfamily p...    93   4e-17
ref|XP_004298437.1| PREDICTED: pentatricopeptide repeat-containi...    93   4e-17
ref|XP_007216200.1| hypothetical protein PRUPE_ppa016055mg, part...    92   8e-17
gb|EYU17543.1| hypothetical protein MIMGU_mgv1a004223mg [Mimulus...    90   3e-16
emb|CBI31981.3| unnamed protein product [Vitis vinifera]               88   1e-15
ref|XP_004486021.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    87   2e-15
ref|XP_003593920.1| Pentatricopeptide repeat-containing protein ...    84   2e-14
ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containi...    83   4e-14
gb|EEE68919.1| hypothetical protein OsJ_27783 [Oryza sativa Japo...    82   1e-13
gb|EEC83802.1| hypothetical protein OsI_29727 [Oryza sativa Indi...    82   1e-13
ref|NP_174012.1| pentatricopeptide repeat-containing protein [Ar...    79   7e-13
ref|XP_006415976.1| hypothetical protein EUTSA_v10009468mg [Eutr...    79   9e-13
ref|XP_006290820.1| hypothetical protein CARUB_v10016929mg [Caps...    79   9e-13
ref|XP_002890625.1| pentatricopeptide repeat-containing protein ...    78   1e-12
ref|XP_006299290.1| hypothetical protein CARUB_v10015444mg [Caps...    74   2e-11

>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  103 bits (257), Expect = 3e-20
 Identities = 47/75 (62%), Positives = 60/75 (80%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           +CIK GFCS+L+V TA I MY   G +D G ++F ++PK+D+V WNC+IDGYAK+ LL E
Sbjct: 254 HCIKVGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQE 313

Query: 47  SLNLLQLMKLEQVKP 3
           SL+LLQLMK EQVKP
Sbjct: 314 SLSLLQLMKREQVKP 328


>ref|XP_004228842.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Solanum lycopersicum]
          Length = 544

 Score =  103 bits (256), Expect = 3e-20
 Identities = 46/75 (61%), Positives = 60/75 (80%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           YCIK GFC  L V+TA ISMYGK G +  GR +FDE  ++D+V WNC+IDGYAKNGLL E
Sbjct: 200 YCIKIGFCDSLKVLTAFISMYGKIGCVSSGRSLFDEASQKDVVLWNCLIDGYAKNGLLQE 259

Query: 47  SLNLLQLMKLEQVKP 3
           +L+LL+ MK++++KP
Sbjct: 260 ALSLLREMKVQRLKP 274


>ref|XP_006364943.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Solanum tuberosum]
          Length = 591

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 45/75 (60%), Positives = 57/75 (76%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           YCIK GFC  L V+TA ISMYGK G +  GR +FDE   +D+V WNC+IDGYAKNGLL+E
Sbjct: 252 YCIKIGFCDSLKVLTALISMYGKIGCISSGRSLFDEAYPKDVVLWNCLIDGYAKNGLLEE 311

Query: 47  SLNLLQLMKLEQVKP 3
           +  LL+ MK++ +KP
Sbjct: 312 ASFLLREMKVQTLKP 326


>ref|XP_007222303.1| hypothetical protein PRUPE_ppa003920mg [Prunus persica]
           gi|462419239|gb|EMJ23502.1| hypothetical protein
           PRUPE_ppa003920mg [Prunus persica]
          Length = 540

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 48/97 (49%), Positives = 67/97 (69%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           VL+ LSA              GYCIK GFCS+L V+TA I  Y KNG++D GR++FD + 
Sbjct: 179 VLNLLSAIGDLGSYLGGESLHGYCIKIGFCSDLHVLTALIDTYAKNGQIDLGRRIFDGVA 238

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
            +D+V WNC++D YAK GL+ +++ LL+LMKLE++KP
Sbjct: 239 VKDVVLWNCLVDKYAKCGLVQDAVALLRLMKLERMKP 275


>ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538285|gb|EEF39892.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 476

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 44/73 (60%), Positives = 59/73 (80%)
 Frame = -1

Query: 224 CIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDES 45
           CIK GFCS L+VVTA I MY K GR+D GR++FD + ++D++ WNC+ID YAK GLL+++
Sbjct: 255 CIKIGFCSNLNVVTALIEMYAKTGRIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQA 314

Query: 44  LNLLQLMKLEQVK 6
           + LLQLMKLE V+
Sbjct: 315 IALLQLMKLEGVR 327


>ref|XP_007046138.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508710073|gb|EOY01970.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 592

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           +C+K GFC + ++V+A I MY K G +  GR++FDE+  +D+V WNC+I  YA+NGLL+E
Sbjct: 250 HCLKVGFCFDSNLVSALIDMYAKTGNVYSGRRVFDEVAVKDVVLWNCMISKYAENGLLEE 309

Query: 47  SLNLLQLMKLEQVKP 3
           SL LL+LMK++QVKP
Sbjct: 310 SLALLRLMKVKQVKP 324


>ref|XP_004298437.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 571

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 39/75 (52%), Positives = 57/75 (76%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           YCIK GFC  L VVTA I +Y KNG ++  R++FD +  +D+V WNC++D YAK G+++E
Sbjct: 243 YCIKMGFCDSLHVVTALIDVYAKNGEIELARRIFDGVAVKDVVLWNCLVDKYAKCGMVEE 302

Query: 47  SLNLLQLMKLEQVKP 3
           ++ LL+LM+LE+ KP
Sbjct: 303 AVALLRLMRLERTKP 317


>ref|XP_007216200.1| hypothetical protein PRUPE_ppa016055mg, partial [Prunus persica]
           gi|462412350|gb|EMJ17399.1| hypothetical protein
           PRUPE_ppa016055mg, partial [Prunus persica]
          Length = 369

 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 45/97 (46%), Positives = 64/97 (65%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           VL+ LSA              GYCI  GFC  L V++A I MY KNG+ D+GR++FD + 
Sbjct: 66  VLNLLSAIGDLGSYLGGESLQGYCINIGFCLYLQVLSALIDMYAKNGQTDFGRRIFDGVA 125

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
            +D+V WNC++D YAK GL+ E++ L +LM+LE++KP
Sbjct: 126 VKDVVLWNCLVDRYAKCGLVQEAVALSRLMRLERMKP 162


>gb|EYU17543.1| hypothetical protein MIMGU_mgv1a004223mg [Mimulus guttatus]
          Length = 538

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +L+ LSA               +  K GF S L+VVTA +SMYGK GR+   R++FDE+ 
Sbjct: 184 ILNVLSALGETRNTSLGECLHVFSFKIGFFSNLNVVTALVSMYGKQGRIHSARKIFDEIT 243

Query: 113 -KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
            K+D++ WNC+IDGYAK GLL+E++ LL  MK   +KP
Sbjct: 244 VKKDIILWNCLIDGYAKTGLLEEAMELLTSMKHHSIKP 281


>emb|CBI31981.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -1

Query: 224 CIKSGFC-SELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           C+    C  +L+V TA I MY   G +D G ++F ++PK+D+V WNC+IDGYAK+ LL E
Sbjct: 215 CLFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQE 274

Query: 47  SLNLLQLMKLEQVKP 3
           SL+LLQLMK EQVKP
Sbjct: 275 SLSLLQLMKREQVKP 289


>ref|XP_004486021.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g26900, mitochondrial-like [Cicer arietinum]
          Length = 580

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 44/97 (45%), Positives = 62/97 (63%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +LS LSA              GYC++ GFCS L+VVTA I MY K G +   R++FD + 
Sbjct: 230 MLSLLSAAGDIGNFVLGKSLHGYCLRIGFCSNLNVVTALIDMYAKTGCIYLARKVFDGLE 289

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
           ++D+V WNC+I  YAKN L+++++ LLQ M+ E VKP
Sbjct: 290 EKDVVLWNCLIGNYAKNSLVEDAVVLLQKMRHEGVKP 326


>ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482968|gb|AES64171.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 801

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 44/96 (45%), Positives = 60/96 (62%)
 Frame = -1

Query: 290 LSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPK 111
           LS LSA              GYCIK GFC  L+VVTA I MY K G +   R++FD + +
Sbjct: 215 LSLLSAAGDIGSFVLGKSLHGYCIKIGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVE 274

Query: 110 RDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
           +D+V WNC+I  YA++ L++E++ LLQ M+ E VKP
Sbjct: 275 KDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKP 310


>ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 38/75 (50%), Positives = 53/75 (70%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           +CIK G  S L VVT  I MYGK G +D    +F+E+ ++D++ WNC+ID YAKNGL+ +
Sbjct: 251 HCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKK 310

Query: 47  SLNLLQLMKLEQVKP 3
           ++  L LMKLE +KP
Sbjct: 311 AVASLHLMKLEGMKP 325


>gb|EEE68919.1| hypothetical protein OsJ_27783 [Oryza sativa Japonica Group]
          Length = 604

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 34/75 (45%), Positives = 54/75 (72%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           +CIK GFC +  V +A + MY +   ++ GR++FDE  KRDLV +NC++DGYA+ G ++E
Sbjct: 237 FCIKVGFCRDAKVASAMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEE 296

Query: 47  SLNLLQLMKLEQVKP 3
           ++ L+  M+LE V+P
Sbjct: 297 AMGLVDRMRLEGVRP 311


>gb|EEC83802.1| hypothetical protein OsI_29727 [Oryza sativa Indica Group]
          Length = 605

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 34/75 (45%), Positives = 54/75 (72%)
 Frame = -1

Query: 227 YCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDE 48
           +CIK GFC +  V +A + MY +   ++ GR++FDE  KRDLV +NC++DGYA+ G ++E
Sbjct: 237 FCIKVGFCRDAKVASAMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEE 296

Query: 47  SLNLLQLMKLEQVKP 3
           ++ L+  M+LE V+P
Sbjct: 297 AMGLVDRMRLEGVRP 311


>ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g26900, mitochondrial; Flags: Precursor
           gi|4262179|gb|AAD14496.1| Hypothetical protein
           [Arabidopsis thaliana] gi|332192635|gb|AEE30756.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 572

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 42/97 (43%), Positives = 58/97 (59%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +LS LSA                CIK G   +L ++TA I MYGK G +   R++FD   
Sbjct: 230 LLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAI 289

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
           ++D+V WNC+ID YAK GLL+E + LL+ MK E++KP
Sbjct: 290 RKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKP 326


>ref|XP_006415976.1| hypothetical protein EUTSA_v10009468mg [Eutrema salsugineum]
           gi|557093747|gb|ESQ34329.1| hypothetical protein
           EUTSA_v10009468mg [Eutrema salsugineum]
          Length = 580

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 44/96 (45%), Positives = 57/96 (59%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +LS LSA              G CIK+G   EL ++TA I MY K G M   R++FD   
Sbjct: 235 LLSFLSATGDLGDLSGAESAYGLCIKTGLDLELHLITALIGMYAKTGDMSSARRIFDCAA 294

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVK 6
           ++D+V WNC+ID YAK GLL+E L LL+ MK E+ K
Sbjct: 295 RKDVVTWNCMIDQYAKMGLLEECLWLLRQMKYEKTK 330


>ref|XP_006290820.1| hypothetical protein CARUB_v10016929mg [Capsella rubella]
           gi|482559527|gb|EOA23718.1| hypothetical protein
           CARUB_v10016929mg [Capsella rubella]
          Length = 575

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 43/97 (44%), Positives = 59/97 (60%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +LS LSA              G C+K G  S+L +VTA + MY K G +   R++FD   
Sbjct: 230 LLSFLSATGDLEDFFGAESSHGLCMKIGLDSDLHIVTALVGMYAKIGEISSARRIFDCAI 289

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
           ++D+V WNC+ID YAK GLL+E L LL+ MK E++KP
Sbjct: 290 RKDVVTWNCMIDQYAKMGLLEECLWLLRQMKYERMKP 326


>ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336467|gb|EFH66884.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 568

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/97 (44%), Positives = 60/97 (61%)
 Frame = -1

Query: 293 VLSGLSACXXXXXXXXXXXXXGYCIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMP 114
           +LS LSA              G CIK GF  +L ++TA I MYGK G +   R++FD   
Sbjct: 226 LLSFLSATGDLGNLSGAESAHGLCIKIGFNLDLHLITALIGMYGKIGDIGSARRIFDCAI 285

Query: 113 KRDLVFWNCIIDGYAKNGLLDESLNLLQLMKLEQVKP 3
           ++D+V WNC+ID YAK G+L+E + LL+ MK E++KP
Sbjct: 286 RKDVVTWNCMIDQYAKMGILEECVWLLRQMKYERMKP 322


>ref|XP_006299290.1| hypothetical protein CARUB_v10015444mg [Capsella rubella]
           gi|482567999|gb|EOA32188.1| hypothetical protein
           CARUB_v10015444mg [Capsella rubella]
          Length = 623

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/74 (45%), Positives = 51/74 (68%)
 Frame = -1

Query: 224 CIKSGFCSELSVVTATISMYGKNGRMDYGRQMFDEMPKRDLVFWNCIIDGYAKNGLLDES 45
           C+K G  SEL+V+ + I+MY K G ++ GR++FDE+P + L+ WN +I GY++NGL  + 
Sbjct: 182 CVKGGTDSELAVLNSLITMYMKCGSVESGRRLFDELPVKGLISWNAVISGYSQNGLAYDV 241

Query: 44  LNLLQLMKLEQVKP 3
           L L +LMK   V P
Sbjct: 242 LELYELMKSSGVFP 255