BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00024878
         (366 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...    60   4e-07
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...    57   3e-06
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...    56   6e-06

>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 38/120 (31%), Positives = 59/120 (49%)
 Frame = +3

Query: 6   ALNNERPSEIDNKKWTTMVLKASSSIRLCLADSVVYEVMVDTIVAWI*KKLHDLTRVWRL 185
           AL    P +ID  KW  M  +A+++IRL L+DSV+Y+VM +     I  KL  L     L
Sbjct: 39  ALQETMPEKIDADKWNEMKAQAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSL 98

Query: 186 RTN*Y*SNNFFPFQRKEGTSLNQHFEDFNKIVRDLTNIGEXXXXXXXXXXXLCFVVLSID 365
            +  Y     +  Q +E + L +H + FN++V DL+ +             LC + LS +
Sbjct: 99  TSKLYLKQQLYGLQVQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYE 158


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/98 (33%), Positives = 53/98 (54%)
 Frame = +3

Query: 6   ALNNERPSEIDNKKWTTMVLKASSSIRLCLADSVVYEVMVDTIVAWI*KKLHDLTRVWRL 185
           AL    P ++D  KW  M  +A+++IRL L+DSV+Y+VM +     I  KL  L     L
Sbjct: 39  ALEETMPEKMDAGKWEEMKAQAAATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSL 98

Query: 186 RTN*Y*SNNFFPFQRKEGTSLNQHFEDFNKIVRDLTNI 299
            +  Y     +  Q +E + L +H + FN++V DL+ +
Sbjct: 99  TSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKL 136


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 33/98 (33%), Positives = 52/98 (53%)
 Frame = +3

Query: 6   ALNNERPSEIDNKKWTTMVLKASSSIRLCLADSVVYEVMVDTIVAWI*KKLHDLTRVWRL 185
           AL    P ++D  KW  M  +A+++IRL L+DSV+Y VM +     I  KL  L     L
Sbjct: 39  ALEETMPEKMDAGKWEEMKAQAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSL 98

Query: 186 RTN*Y*SNNFFPFQRKEGTSLNQHFEDFNKIVRDLTNI 299
            +  Y     +  Q +E + L +H + FN++V DL+ +
Sbjct: 99  TSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKL 136