BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00024802
         (1278 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal doma...   281   4e-73
ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphat...   258   3e-66
ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citr...   244   4e-62
ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citr...   244   4e-62
ref|XP_006438857.1| hypothetical protein CICLE_v10030535mg [Citr...   244   4e-62
gb|EXB81217.1| RNA polymerase II C-terminal domain phosphatase-l...   242   3e-61
ref|XP_002304714.2| hypothetical protein POPTR_0003s16280g [Popu...   238   5e-60
ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative ...   223   1e-55
ref|XP_002297869.2| CTD phosphatase-like protein 3 [Populus tric...   223   2e-55
ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Popu...   221   5e-55
ref|XP_007225412.1| hypothetical protein PRUPE_ppa000589mg [Prun...   221   7e-55
emb|CBI35661.3| unnamed protein product [Vitis vinifera]              215   3e-53
ref|XP_004310239.1| PREDICTED: RNA polymerase II C-terminal doma...   195   3e-47
ref|XP_003530482.2| PREDICTED: RNA polymerase II C-terminal doma...   187   8e-45
ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   185   4e-44
ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal doma...   185   4e-44
ref|XP_007139315.1| hypothetical protein PHAVU_008G019000g [Phas...   184   7e-44
ref|XP_006341905.1| PREDICTED: RNA polymerase II C-terminal doma...   183   2e-43
ref|XP_004492029.1| PREDICTED: RNA polymerase II C-terminal doma...   183   2e-43
ref|XP_004492028.1| PREDICTED: RNA polymerase II C-terminal doma...   183   2e-43

>ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Vitis vinifera]
          Length = 1238

 Score =  281 bits (719), Expect = 4e-73
 Identities = 181/433 (41%), Positives = 239/433 (55%), Gaps = 8/433 (1%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  + ++EVE  + FLD  ++ S  ++ ++  + Q+ + +N+N L    E  G+ F S+ 
Sbjct: 284  FSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAK 343

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
            K  L+ +SV+  +Q+      D  K G LS  R R  FGPLLDLH+DHD DSLPSPT + 
Sbjct: 344  KLSLDSISVESYNQNN----PDALKPG-LSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKA 398

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
            P   FP          V KSEL T +VA  T+  + HPYETDALKAVSTYQQKFG TS  
Sbjct: 399  PQC-FP----------VNKSELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFL 447

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSVV 722
                LPSPTPSEE                          P    P  SS   ++  SS+V
Sbjct: 448  PIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMD--SSIV 505

Query: 723  PTKTVGQ------FGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQ--CPPVAAGPKSE 878
               TVG+       GP L+ ++ A +KSRDPRLR A+ +AGS DLN+   P V+  PK +
Sbjct: 506  QGPTVGRNTSLVSSGPHLDSSVVASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVD 565

Query: 879  PLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFA 1058
            PLG  + SRK K  +E +LDG   KRQRNG+TS A  RD Q V  SGGWLEDSNTV    
Sbjct: 566  PLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQM 625

Query: 1059 TDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLL 1238
             ++ ++  N GTD ++ E     +G   D     +N     NE   ++ +++T SL SLL
Sbjct: 626  MNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVN----GNEHLPVVATSTTASLQSLL 681

Query: 1239 KDIAVNPTVLMQL 1277
            KDIAVNP V M +
Sbjct: 682  KDIAVNPAVWMNI 694


>ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphatase-like 3, putative
            [Theobroma cacao] gi|508707765|gb|EOX99661.1| RNA
            polymerase II C-terminal domain phosphatase-like 3,
            putative [Theobroma cacao]
          Length = 1290

 Score =  258 bits (660), Expect = 3e-66
 Identities = 167/407 (41%), Positives = 233/407 (57%), Gaps = 4/407 (0%)
 Frame = +3

Query: 69   SHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSNKKILEPMSVKMVDQSTGNRGSD 248
            S  ++++ +K+ ++ + +N+ +   L E        +NK    P S K V  +  N  ++
Sbjct: 324  SPARAIDTEKDMKVVDGVNKKDPDALPENICHDLTVTNKL---PSSAKFVINNKPNALTE 380

Query: 249  TSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVKSEL 428
            T K G+   FR+RG   PLLDLH+DHDADSLPSPTRET P   P+ K   +GD +VKS  
Sbjct: 381  TLKPGV-PNFRNRGISLPLLDLHKDHDADSLPSPTRETTPC-LPVNKPLTSGDVMVKSGF 438

Query: 429  ATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEECEIXXXXXX 608
             T + + + EG   HPYETDALKA STYQQKFG+ S F +  LPSPTPSEE         
Sbjct: 439  MTGKGSHDAEGDKLHPYETDALKAFSTYQQKFGQGSFFSSDRLPSPTPSEESG-DEGGDN 497

Query: 609  XXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSV----VPTKTVGQFGPGLNVNIKA 776
                            LP+   P  SS   ++ ASS     + T+         N+  K+
Sbjct: 498  GGEVSSSSSIGNFKPNLPILGHPIVSSAPLVDSASSSLQGQITTRNATPMSSVSNIVSKS 557

Query: 777  PSKSRDPRLRFANLEAGSFDLNQCPPVAAGPKSEPLGGQIGSRKNKVVDESVLDGHALKR 956
             +KSRDPRL FAN  A + DLN+   +    K  P+GG + SRK K V+E +LD  ALKR
Sbjct: 558  LAKSRDPRLWFANSNASALDLNE-RLLHNASKVAPVGGIMDSRKKKSVEEPILDSPALKR 616

Query: 957  QRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQSEDGENTSGR 1136
            QRN + +  V+RDVQ V+G GGWLED++ + S  T++ +   NL ++ R+ ++G  +S  
Sbjct: 617  QRNELENLGVARDVQTVSGIGGWLEDTDAIGSQITNRNQTAENLESNSRKMDNGVTSS-- 674

Query: 1137 RKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
               T + K N   G+NE+   + STST SLP+LLKDIAVNPT+L+ +
Sbjct: 675  --STLSGKTNITVGTNEQVP-VTSTSTPSLPALLKDIAVNPTMLINI 718


>ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|568858958|ref|XP_006483010.1| PREDICTED: RNA
            polymerase II C-terminal domain phosphatase-like 3-like
            [Citrus sinensis] gi|557541056|gb|ESR52100.1|
            hypothetical protein CICLE_v10030535mg [Citrus
            clementina]
          Length = 1234

 Score =  244 bits (624), Expect = 4e-62
 Identities = 167/440 (37%), Positives = 232/440 (52%), Gaps = 15/440 (3%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F   Q++E+EA +  L  +++       +++K+    + +N  +  ++ E      N  N
Sbjct: 267  FSSNQIKEMEAMLSSLVTRAN-------DKEKDMLAMHGVNGKDSNIVTENA---VNDLN 316

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
             K   P+ V  + Q   N+  + SK G   G+RSRG   PLLD H+ HD DSLPSPTRET
Sbjct: 317  FKEKVPLPVDSLMQ---NKPLEASKPGP-PGYRSRGVLLPLLDPHKVHDVDSLPSPTRET 372

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
             P+  P+ +  + GDGVVKS  A  +++ N E      YETDAL+A S+YQQKFGR S F
Sbjct: 373  TPSV-PVQRALVVGDGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFF 431

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXL------PVPSQPFS------- 683
            MN++LPSPTPSEE                         +      PV SQP         
Sbjct: 432  MNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDI 491

Query: 684  SSTSHLNGASSVVPTKTVGQFGPGLNVN--IKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
            SS   L  A++  P  +   + P +  N  +KAP KSRDPRLRFA+  A + +    P +
Sbjct: 492  SSVQALTTANNSAPASS--GYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPIL 549

Query: 858  AAGPKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDS 1037
               PK EP+G  + SRK K V+E VLDG ALKRQRNG  +S V RD + + GSGGWLED+
Sbjct: 550  HNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDT 609

Query: 1038 NTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTST 1217
            +  +    ++     NL  D  +S   +  +G      +   N     NE       ++T
Sbjct: 610  DMFEPQIMNR-----NLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTT 664

Query: 1218 VSLPSLLKDIAVNPTVLMQL 1277
            VSLP+LLKDIAVNPT+L+ +
Sbjct: 665  VSLPALLKDIAVNPTMLLNI 684


>ref|XP_006438858.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|557541054|gb|ESR52098.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
          Length = 1208

 Score =  244 bits (624), Expect = 4e-62
 Identities = 167/440 (37%), Positives = 232/440 (52%), Gaps = 15/440 (3%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F   Q++E+EA +  L  +++       +++K+    + +N  +  ++ E      N  N
Sbjct: 267  FSSNQIKEMEAMLSSLVTRAN-------DKEKDMLAMHGVNGKDSNIVTENA---VNDLN 316

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
             K   P+ V  + Q   N+  + SK G   G+RSRG   PLLD H+ HD DSLPSPTRET
Sbjct: 317  FKEKVPLPVDSLMQ---NKPLEASKPGP-PGYRSRGVLLPLLDPHKVHDVDSLPSPTRET 372

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
             P+  P+ +  + GDGVVKS  A  +++ N E      YETDAL+A S+YQQKFGR S F
Sbjct: 373  TPSV-PVQRALVVGDGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFF 431

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXL------PVPSQPFS------- 683
            MN++LPSPTPSEE                         +      PV SQP         
Sbjct: 432  MNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDI 491

Query: 684  SSTSHLNGASSVVPTKTVGQFGPGLNVN--IKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
            SS   L  A++  P  +   + P +  N  +KAP KSRDPRLRFA+  A + +    P +
Sbjct: 492  SSVQALTTANNSAPASS--GYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPIL 549

Query: 858  AAGPKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDS 1037
               PK EP+G  + SRK K V+E VLDG ALKRQRNG  +S V RD + + GSGGWLED+
Sbjct: 550  HNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDT 609

Query: 1038 NTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTST 1217
            +  +    ++     NL  D  +S   +  +G      +   N     NE       ++T
Sbjct: 610  DMFEPQIMNR-----NLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTT 664

Query: 1218 VSLPSLLKDIAVNPTVLMQL 1277
            VSLP+LLKDIAVNPT+L+ +
Sbjct: 665  VSLPALLKDIAVNPTMLLNI 684


>ref|XP_006438857.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|567892677|ref|XP_006438859.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
            gi|557541053|gb|ESR52097.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
            gi|557541055|gb|ESR52099.1| hypothetical protein
            CICLE_v10030535mg [Citrus clementina]
          Length = 1118

 Score =  244 bits (624), Expect = 4e-62
 Identities = 167/440 (37%), Positives = 232/440 (52%), Gaps = 15/440 (3%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F   Q++E+EA +  L  +++       +++K+    + +N  +  ++ E      N  N
Sbjct: 267  FSSNQIKEMEAMLSSLVTRAN-------DKEKDMLAMHGVNGKDSNIVTENA---VNDLN 316

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
             K   P+ V  + Q   N+  + SK G   G+RSRG   PLLD H+ HD DSLPSPTRET
Sbjct: 317  FKEKVPLPVDSLMQ---NKPLEASKPGP-PGYRSRGVLLPLLDPHKVHDVDSLPSPTRET 372

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
             P+  P+ +  + GDGVVKS  A  +++ N E      YETDAL+A S+YQQKFGR S F
Sbjct: 373  TPSV-PVQRALVVGDGVVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFF 431

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXL------PVPSQPFS------- 683
            MN++LPSPTPSEE                         +      PV SQP         
Sbjct: 432  MNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDI 491

Query: 684  SSTSHLNGASSVVPTKTVGQFGPGLNVN--IKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
            SS   L  A++  P  +   + P +  N  +KAP KSRDPRLRFA+  A + +    P +
Sbjct: 492  SSVQALTTANNSAPASS--GYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPIL 549

Query: 858  AAGPKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDS 1037
               PK EP+G  + SRK K V+E VLDG ALKRQRNG  +S V RD + + GSGGWLED+
Sbjct: 550  HNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDT 609

Query: 1038 NTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTST 1217
            +  +    ++     NL  D  +S   +  +G      +   N     NE       ++T
Sbjct: 610  DMFEPQIMNR-----NLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTT 664

Query: 1218 VSLPSLLKDIAVNPTVLMQL 1277
            VSLP+LLKDIAVNPT+L+ +
Sbjct: 665  VSLPALLKDIAVNPTMLLNI 684


>gb|EXB81217.1| RNA polymerase II C-terminal domain phosphatase-like 3 [Morus
            notabilis]
          Length = 1301

 Score =  242 bits (617), Expect = 3e-61
 Identities = 169/436 (38%), Positives = 228/436 (52%), Gaps = 11/436 (2%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  +Q +E+E  I  L+  + L    + +++KE QI  R+++ +  +         N+ N
Sbjct: 299  FSPEQTKEIELMISSLNPLNVLPSSGASDKEKETQIIERLHEMDSNLTNA------NAEN 352

Query: 183  KKILEPMSVKM-------VDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSL 341
              I E  SVK+       V  S      +  + G L+ F+ RG   PLLDLH+DHDADSL
Sbjct: 353  ASI-ERTSVKLPQDCVASVVHSNPITLPELLRPGTLA-FKGRGLLLPLLDLHKDHDADSL 410

Query: 342  PSPTRETPPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQK 521
            PSPTRE P + FP+ K     DG++K    T +VA   E    H YETDALKAVSTYQQK
Sbjct: 411  PSPTREAP-SCFPVYKPLGVADGIIKPVSTTAKVAPGAEESRLHRYETDALKAVSTYQQK 469

Query: 522  FGRTSLFMNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPV--PSQPFSSSTS 695
            FGR S  M+  LPSPTPSEEC+                       +P+  PS   SS   
Sbjct: 470  FGRGSFLMSDRLPSPTPSEECD-EEDDINQEVSSSLTSGNLRTPAIPILRPSVVTSSVPV 528

Query: 696  HLNGASSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAA--GP 869
                    +  K     G G N  +KA ++SRDPRLRFAN +AG+ DLNQ P  A   GP
Sbjct: 529  SSPTMQGPIAAKNAAPVGSGSNSTMKASARSRDPRLRFANSDAGALDLNQRPLTAVHNGP 588

Query: 870  KSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQ 1049
            K EP G    SRK ++V+E  LDG ALKRQR+   S+ +  DV+  +G GGWLED+ T  
Sbjct: 589  KVEP-GDPTSSRKQRIVEEPNLDGPALKRQRHAFVSAKI--DVKTASGVGGWLEDNGTTG 645

Query: 1050 SFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLP 1229
                +K ++  N   D R+S    N             N  N   E+  + G+++  +LP
Sbjct: 646  PQIMNKNQLVENAEADPRKSIHLVN--------GPIMNNGPNIGKEQVPVTGTSTPDALP 697

Query: 1230 SLLKDIAVNPTVLMQL 1277
            ++LKDIAVNPT+ M +
Sbjct: 698  AILKDIAVNPTIFMDI 713


>ref|XP_002304714.2| hypothetical protein POPTR_0003s16280g [Populus trichocarpa]
            gi|550343307|gb|EEE79693.2| hypothetical protein
            POPTR_0003s16280g [Populus trichocarpa]
          Length = 1030

 Score =  238 bits (606), Expect = 5e-60
 Identities = 161/452 (35%), Positives = 229/452 (50%), Gaps = 27/452 (5%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  +  +E+E  +  LD+   LS  ++ E ++E Q++ ++N+ +   L +  G    + N
Sbjct: 28   FSPEHTKEIELMVSSLDSHDILSSSRAGE-ERETQVSGKVNERDNDSLSKTAGYDLTTMN 86

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
            +    P + +    +  N   +  K G+ S F+SRG   PLLDL + HD DSLPSPTRET
Sbjct: 87   RL---PSAAESFVHNKPNFSIEPPKPGVPS-FKSRGVLLPLLDLKKFHDEDSLPSPTRET 142

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
             P+ FP+ +    GDG++ S L  P+VA  TE    HPYETDALKAVS+YQ+KF   S F
Sbjct: 143  APS-FPVQRLLPIGDGMISSGLPVPKVASITEEPRVHPYETDALKAVSSYQKKFNLNSFF 201

Query: 543  MNTDLPSPTPSEE-------------CEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFS 683
             N +LPSPTPSEE                                       P P  P  
Sbjct: 202  TN-ELPSPTPSEESGNGDGDTAGEVSSSSTVNYRTVNPPVSDRKSASPSPSPPPPPPPPP 260

Query: 684  SSTSHLNGAS--SVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
                HLN +S   V+PT+       G +  +KA +KSRDPRLR+ N +A + D NQ   +
Sbjct: 261  PPPPHLNNSSIRVVIPTRNSAPVSSGTSSTVKASAKSRDPRLRYVNTDASALDQNQRTLL 320

Query: 858  AAG--PKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLE 1031
                 P++EP G   GSRK K ++E VLDG +LKRQRN   +  V RD++ + G+GGWLE
Sbjct: 321  MVNNPPRAEPSGAIAGSRKQK-IEEDVLDGTSLKRQRNSFDNFGVVRDIRSMTGTGGWLE 379

Query: 1032 DSNTVQSFATDK----------RRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGS 1181
            D++  +    +K          +RI   +      S     +           +N   GS
Sbjct: 380  DTDMAEPQTVNKNQWAENAEPGQRINNGVVCPSTGSVMSSVSCSGNVQVPVMGINTIAGS 439

Query: 1182 NERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
             + P  + ST+T SLP LLKDI VNPT+L+ +
Sbjct: 440  EQAP--VTSTTTASLPDLLKDITVNPTMLINI 469


>ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]
            gi|223548611|gb|EEF50102.1| RNA polymerase II ctd
            phosphatase, putative [Ricinus communis]
          Length = 1195

 Score =  223 bits (569), Expect = 1e-55
 Identities = 151/427 (35%), Positives = 224/427 (52%), Gaps = 21/427 (4%)
 Frame = +3

Query: 60   SSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSNKKILEPMSVKMVDQSTGNR 239
            S +S     E++KE  I+  +N+ +  V G+  G   ++ NK     +       +  N 
Sbjct: 240  SGVSFSSFSEKEKEPLISTVVNKKDNDVNGKSSGHDMSAVNK-----LPTDSFVNNKANL 294

Query: 240  GSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVK 419
              +  K G+ S F+SR A  PLLDLH+DHDADSLPSPTRE+     PLP  ++       
Sbjct: 295  SIEGPKTGV-SSFKSRAALLPLLDLHKDHDADSLPSPTRES---ALPLPAYRVL------ 344

Query: 420  SELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEECEIXXX 599
                TP++  +T     HPYETDALKAVS+YQQKF ++S  +   LPSPTPSEE      
Sbjct: 345  ----TPKMVLDTGNSRMHPYETDALKAVSSYQQKFSKSSFALTDRLPSPTPSEESGNGDG 400

Query: 600  XXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSH-------LNGAS--SVVPTKTVGQFGP 752
                                  P+ P +S  S+       ++G+S   V+  K+  +   
Sbjct: 401  DTGGEVSSSLSVSSFR------PANPLTSGQSNASISLPRMDGSSLPGVISIKSAVRASS 454

Query: 753  GLNVNIKAPSKSRDPRLRFANLEAGSFDLN-QCPPVAAGPKSEPLGGQIGSRKNKVVDES 929
              ++ +KA +KSRDPRLRF N ++ + D N +  PV    K EP+GG +  ++ K+VD+ 
Sbjct: 455  APSLTVKASAKSRDPRLRFVNSDSNALDQNHRAVPVVNTLKVEPIGGTMNKKRQKIVDDP 514

Query: 930  VLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQS 1109
            + DGH+LKRQ+N + +S V RDV+ + GSGGWLED++ V     +K ++  N  +D R+ 
Sbjct: 515  IPDGHSLKRQKNALENSGVVRDVKTMVGSGGWLEDTDMVGPQTMNKNQLVDNAESDPRRK 574

Query: 1110 EDG-----------ENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVN 1256
            + G            N SG  +   T       G  E   + GST+  ++P LLK+IAVN
Sbjct: 575  DGGGVCTSSSCISSVNISGTEQIPVTGTSVPIGG--ELVPVKGSTA--AIPDLLKNIAVN 630

Query: 1257 PTVLMQL 1277
            PT+L+ +
Sbjct: 631  PTMLINI 637


>ref|XP_002297869.2| CTD phosphatase-like protein 3 [Populus trichocarpa]
            gi|550347145|gb|EEE82674.2| CTD phosphatase-like protein
            3 [Populus trichocarpa]
          Length = 1190

 Score =  223 bits (567), Expect = 2e-55
 Identities = 151/398 (37%), Positives = 208/398 (52%), Gaps = 12/398 (3%)
 Frame = +3

Query: 120  INQNELGVLGEKPGQLFNSSNKKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFG 299
            +N+N    L +  G    + ++K+  P +   V Q+  N+  +  K   +  F+SRG   
Sbjct: 252  LNENHNDSLAKTAGYDLTTMSEKL--PAAETFV-QNKPNKSIEAPKPPGVPSFKSRGVLL 308

Query: 300  PLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPY 479
            PLLDL + HD DSLPSPT+ET P  FP+ +    GDG+V S L  P+V    E    HPY
Sbjct: 309  PLLDLKKYHDEDSLPSPTQETTP--FPVQRLLAIGDGMVSSGLPVPKVTPVAEEPRMHPY 366

Query: 480  ETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXL 659
            ETDALKAVS+YQQKF R S F N +LPSPTPSEE                          
Sbjct: 367  ETDALKAVSSYQQKFNRNSFFTN-ELPSPTPSEESGNGDGDTAGEVSSSSTVVNYRTVNP 425

Query: 660  PVPSQ--------PFSSSTSHLNGAS--SVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRF 809
            PV  Q        P      H + ++   VVPT+       G +  IKA +KSRDPRLR+
Sbjct: 426  PVSDQKNAPPSPPPLPPPPPHPDSSNIRGVVPTRNSAPVSSGPSSTIKASAKSRDPRLRY 485

Query: 810  ANLEAGSFDLNQ--CPPVAAGPKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSA 983
             N++A + D NQ   P V   P+ EP G  +GS+K+K ++E VLD  +LKRQRN   +  
Sbjct: 486  VNIDACALDHNQRALPMVNNLPRVEPAGAIVGSKKHK-IEEDVLDDPSLKRQRNSFDNYG 544

Query: 984  VSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKL 1163
              RD++ + G+GGWLED++  +    +K +   N            N SG  +      +
Sbjct: 545  AVRDIESMTGTGGWLEDTDMAEPQTVNKNQWAEN---------SNVNGSGNAQSPFMG-I 594

Query: 1164 NEANGSNERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
            +   GS +    + ST+T SLP LLKDIAVNPT+L+ +
Sbjct: 595  SNITGSEQAQ--VTSTATTSLPDLLKDIAVNPTMLINI 630


>ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Populus trichocarpa]
            gi|550343308|gb|EEE79627.2| hypothetical protein
            POPTR_0003s16280g [Populus trichocarpa]
          Length = 1247

 Score =  221 bits (563), Expect = 5e-55
 Identities = 147/387 (37%), Positives = 197/387 (50%), Gaps = 27/387 (6%)
 Frame = +3

Query: 198  PMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTF 377
            P + +    +  N   +  K G+ S F+SRG   PLLDL + HD DSLPSPTRET P+ F
Sbjct: 306  PSAAESFVHNKPNFSIEPPKPGVPS-FKSRGVLLPLLDLKKFHDEDSLPSPTRETAPS-F 363

Query: 378  PLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDL 557
            P+ +    GDG++ S L  P+VA  TE    HPYETDALKAVS+YQ+KF   S F N +L
Sbjct: 364  PVQRLLPIGDGMISSGLPVPKVASITEEPRVHPYETDALKAVSSYQKKFNLNSFFTN-EL 422

Query: 558  PSPTPSEEC-------------EIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSH 698
            PSPTPSEE                                       P P  P      H
Sbjct: 423  PSPTPSEESGNGDGDTAGEVSSSSTVNYRTVNPPVSDRKSASPSPSPPPPPPPPPPPPPH 482

Query: 699  LNGASS--VVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAAG-- 866
            LN +S   V+PT+       G +  +KA +KSRDPRLR+ N +A + D NQ   +     
Sbjct: 483  LNNSSIRVVIPTRNSAPVSSGTSSTVKASAKSRDPRLRYVNTDASALDQNQRTLLMVNNP 542

Query: 867  PKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTV 1046
            P++EP G   GSRK K+ +E VLDG +LKRQRN   +  V RD++ + G+GGWLED++  
Sbjct: 543  PRAEPSGAIAGSRKQKI-EEDVLDGTSLKRQRNSFDNFGVVRDIRSMTGTGGWLEDTDMA 601

Query: 1047 QSFATDK----------RRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQ 1196
            +    +K          +RI   +      S     +           +N   GS + P 
Sbjct: 602  EPQTVNKNQWAENAEPGQRINNGVVCPSTGSVMSSVSCSGNVQVPVMGINTIAGSEQAP- 660

Query: 1197 LIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
             + ST+T SLP LLKDI VNPT+L+ +
Sbjct: 661  -VTSTTTASLPDLLKDITVNPTMLINI 686


>ref|XP_007225412.1| hypothetical protein PRUPE_ppa000589mg [Prunus persica]
            gi|462422348|gb|EMJ26611.1| hypothetical protein
            PRUPE_ppa000589mg [Prunus persica]
          Length = 1085

 Score =  221 bits (562), Expect = 7e-55
 Identities = 148/352 (42%), Positives = 193/352 (54%), Gaps = 7/352 (1%)
 Frame = +3

Query: 243  SDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVKS 422
            S+  + G+ S  + RG   PLLDLH+DHDADSLPSPTRETP + FP+    +  DG+VKS
Sbjct: 185  SEVPRPGV-SSLKGRGVLLPLLDLHKDHDADSLPSPTRETP-SCFPVQNTLVVADGMVKS 242

Query: 423  --ELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEECEIXX 596
              + AT RVA N E    H YET+ALKAVS+YQQKF R+S  M+  LPSPTPSE+     
Sbjct: 243  ASDTATARVALNAEDSRLHSYETEALKAVSSYQQKFNRSSFLMSERLPSPTPSEDGG-NG 301

Query: 597  XXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSVVPTKTVGQFGP---GLNVN 767
                                 P+  +   S +    G+ S+    T     P     ++ 
Sbjct: 302  DDDTGGEVSSSFASNLRTSCPPISGRQIVSPSPIPVGSPSMQGRATAKSAAPPNSEPSMT 361

Query: 768  IKAPSKSRDPRLRFANLEAGSFDLNQCPP--VAAGPKSEPLGGQIGSRKNKVVDESVLDG 941
            IKA +KSRDPRLRFAN + G+ +LNQ P   V + PK + +   + SRK K ++ES  DG
Sbjct: 362  IKASAKSRDPRLRFANSDMGALNLNQQPSTVVHSAPKVDSV-ITLSSRKQKPLEESRFDG 420

Query: 942  HALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQSEDGE 1121
             ALKRQRN + +S +  D +  +GSGGWLED   V      K +   N  TD R      
Sbjct: 421  PALKRQRNALENSGIVGDAKTASGSGGWLEDIGGVGPHLNSKNQTVENAETDPRNVVKVL 480

Query: 1122 NTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
            ++      T     N  N +NE   L+G+ S  SLP LLKDIAVNPT+L+ L
Sbjct: 481  SS----PSTVDCNTNGPNSANEHVSLMGA-SMASLPELLKDIAVNPTMLLNL 527


>emb|CBI35661.3| unnamed protein product [Vitis vinifera]
          Length = 1184

 Score =  215 bits (548), Expect = 3e-53
 Identities = 151/427 (35%), Positives = 196/427 (45%), Gaps = 2/427 (0%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  + ++EVE  + FLD  ++ S  ++ ++  + Q+ + +N+N L    E  G+ F S+ 
Sbjct: 295  FSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAK 354

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
            K                              FR R  FGPLLDLH+DHD DSLPSPT + 
Sbjct: 355  K------------------------------FRGRFIFGPLLDLHKDHDEDSLPSPTGKA 384

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
            P   FP          V KSEL T +VA  T+  + HPYETDALKAVSTYQQKFG TS  
Sbjct: 385  PQC-FP----------VNKSELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFL 433

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSVV 722
                LPSPTPSEE                          P    P  SS   ++    +V
Sbjct: 434  PIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDIVQGLV 493

Query: 723  PTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQ--CPPVAAGPKSEPLGGQI 896
              +  G      N  ++A +KSRDPRLR A+ +AGS DLN+   P V+  PK +PLG  +
Sbjct: 494  VPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIV 553

Query: 897  GSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDKRRI 1076
             SRK K  +E +LDG   KRQRNG+TS A              LE   TV     DK  +
Sbjct: 554  SSRKQKSAEEPLLDGPVTKRQRNGLTSPATK------------LESKVTVTGIGCDKPYV 601

Query: 1077 EGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVN 1256
              N                                NE   ++ +++T SL SLLKDIAVN
Sbjct: 602  TVN-------------------------------GNEHLPVVATSTTASLQSLLKDIAVN 630

Query: 1257 PTVLMQL 1277
            P V M +
Sbjct: 631  PAVWMNI 637


>ref|XP_004310239.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Fragaria vesca subsp. vesca]
          Length = 1230

 Score =  195 bits (496), Expect = 3e-47
 Identities = 152/439 (34%), Positives = 218/439 (49%), Gaps = 14/439 (3%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFN-SS 179
            F  +QL+E+E     +D+  +    K+  ++   Q  N + + +    G     +F  ++
Sbjct: 258  FPAEQLKEIEVMSSSMDSPQT----KAGTKENGIQCINGVYKTDSDTSGANASHVFTYAA 313

Query: 180  NKKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRE 359
            N      +SV     S  N  S+  + G  S F+ RG   PLLDLH DHD DSLPSPTRE
Sbjct: 314  NTGSDTQVSVV---HSNPNISSEVPRSGS-SSFKGRGLMLPLLDLHMDHDEDSLPSPTRE 369

Query: 360  TPPTTFPLPKQKITGDGVVK-SELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTS 536
             PP  FP  K  +  +G+VK S   T R A + EG   H YET+ALKAVS+YQQKF R S
Sbjct: 370  -PPACFPAQKPVVVENGMVKKSGWETARAALDVEGSKMHVYETEALKAVSSYQQKFSRNS 428

Query: 537  LFMNTDLPSPTPSEE----------CEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSS 686
             F+ ++LPSPTPSEE           E+                        VP+     
Sbjct: 429  -FLTSELPSPTPSEEEGDNGDDAAVGEVSSSSASNNVRTPQPPVSGRQVVSSVPATTLPG 487

Query: 687  STSHLNGASSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAA- 863
            S+    G   ++  KT      G N+  K+ +KSRDPRLRFAN +AG+  LNQ   +   
Sbjct: 488  SS----GMHGLITAKTASPVSLGSNMPNKSSAKSRDPRLRFANSDAGALTLNQQSSIQVH 543

Query: 864  -GPKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSN 1040
              PK + +   + SRK+K  ++S  DG   KRQR    +S V    +   G+G WLED +
Sbjct: 544  NAPKVDSV-ITLSSRKHKSPEDSNFDGPESKRQRG--ANSVVGWGAKTSFGNGVWLEDGS 600

Query: 1041 TVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTV 1220
            +V     ++ +       D R+  +  ++ G    T     N  N +NE+  L+ + S V
Sbjct: 601  SVGPHLINRNQTVEKKEADPRKMVNVSSSPG----TVEGNSNGQNTANEKVPLV-APSLV 655

Query: 1221 SLPSLLKDIAVNPTVLMQL 1277
            SLP++ KDIAVNPT+L+ +
Sbjct: 656  SLPAIFKDIAVNPTMLVNI 674


>ref|XP_003530482.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Glycine max]
          Length = 1261

 Score =  187 bits (475), Expect = 8e-45
 Identities = 135/429 (31%), Positives = 221/429 (51%), Gaps = 4/429 (0%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  + ++E++  +  +D+  +L + +++ ++KE Q    I   E   +  +  ++    N
Sbjct: 277  FSPEHVKEIQGMMTAIDSVGALVNSEAIGKEKELQ-TTEIKTQENSAVEVQIHEIKTQEN 335

Query: 183  KKILEPMSVKMVDQSTG-NRGSDTSKQGILSG---FRSRGAFGPLLDLHRDHDADSLPSP 350
            + +    + +++  S   +R    + Q +  G    + RG   PLLDLH+DHDADSLPSP
Sbjct: 336  QAV---EAAELISYSKPLHRDITGTSQALKFGQNSIKGRGVLLPLLDLHKDHDADSLPSP 392

Query: 351  TRETPPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGR 530
            TRE P + FP+ K    G+ +V+S  A+ ++  ++EG   H YETDALKAVSTYQQKFGR
Sbjct: 393  TREAP-SCFPVNKLLSVGESMVRSGSASAKMELDSEGSKFHLYETDALKAVSTYQQKFGR 451

Query: 531  TSLFMNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGA 710
            +SLF N   PSPTPS +CE                         +  QP  S+TS    +
Sbjct: 452  SSLFTNDKFPSPTPSGDCEDEVVDTNEEVSSASTGDFLTSTKPTLLDQPPVSATSMDRSS 511

Query: 711  SSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAAGPKSEPLGG 890
                 +  V   GPG +  +K+ +K+RDPRLRF N +A + D N    +    K E  G 
Sbjct: 512  MHGFISSRVDATGPG-SFPVKSSAKNRDPRLRFINSDASAVD-NLSTLINNMSKVEYSGT 569

Query: 891  QIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDKR 1070
             I SRK K  +E  LD    KR ++ + ++  +   ++  GSGGWLE++    +   ++ 
Sbjct: 570  TI-SRKQKAAEEPSLDVTVSKRLKSSLENTEHNMS-EVRTGSGGWLEENTGPGAQLIERN 627

Query: 1071 RIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIA 1250
             +    G + +++ +  ++S     T +   N  +  NE+  +  S    SLP+LLK+ +
Sbjct: 628  HLMDKFGPEAKKTLNTVSSS----CTGSDNFNATSIRNEQAPITASNVLASLPALLKEAS 683

Query: 1251 VNPTVLMQL 1277
            VNP +L+ +
Sbjct: 684  VNPIMLVNI 692


>ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain
            phosphatase-like 3-like [Cucumis sativus]
          Length = 1249

 Score =  185 bits (469), Expect = 4e-44
 Identities = 152/447 (34%), Positives = 206/447 (46%), Gaps = 22/447 (4%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  +Q++ VE  +   D+   L  ++   ++ E  I N +   +              SN
Sbjct: 291  FSPEQIKSVEVKMPSTDSLDHLPSMRGSAKEVEIHIPNGVKDMDFYSAYTSTSSQLTPSN 350

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
            K   + +   +  ++  N  S+  + G+ S  + RG   PLLDLH+DHDADSLPSPTRE 
Sbjct: 351  KLASDSIPFGVKGKNNLNILSEGLQSGV-SSIKGRGPLLPLLDLHKDHDADSLPSPTREA 409

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
            P T F           V KS  A  ++A   +G  +HPYETDALKAVSTYQQKFGR+S  
Sbjct: 410  P-TIF----------SVQKSGNAPTKMAFPVDGSRSHPYETDALKAVSTYQQKFGRSSFS 458

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPF-------------- 680
            M   LPSPTPSEE +                       +  P Q                
Sbjct: 459  MADRLPSPTPSEEHD-GGGDIGGEVSSSSIIRSLKSSNVSKPGQKSNSASNVSTGLFPNM 517

Query: 681  -SSSTSHLNGASSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
             SSST  L    +V P  +V       N  +K  +KSRDPRLR  N +A   DLN  P  
Sbjct: 518  DSSSTRVLISPLNVAPPSSVS------NPTVKPLAKSRDPRLRIVNSDASGMDLN--PRT 569

Query: 858  AAGPKSEPL---GGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAV-SRDVQMVAGSGGW 1025
             A  +S  +      +  RK K+  E   DG  +KR R G  + AV + DV+ V+GSGGW
Sbjct: 570  MASVQSSSILESAATLHLRKQKMDGEPNTDGPEVKRLRIGSQNLAVAASDVRAVSGSGGW 629

Query: 1026 LEDSNTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGS---NERPQ 1196
            LED+        ++ ++E                    +  AT K N  N S   NE   
Sbjct: 630  LEDTMPAGPRLFNRNQME------------------IAEANATEKSNVTNNSGSGNECTP 671

Query: 1197 LIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
             + +++  SLPSLLKDI VNPT+L+ L
Sbjct: 672  TVNNSNDASLPSLLKDIVVNPTMLLNL 698


>ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Cucumis sativus]
          Length = 1249

 Score =  185 bits (469), Expect = 4e-44
 Identities = 152/447 (34%), Positives = 206/447 (46%), Gaps = 22/447 (4%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSN 182
            F  +Q++ VE  +   D+   L  ++   ++ E  I N +   +              SN
Sbjct: 291  FSPEQIKSVEVKMPSTDSLDHLPSMRGSAKEVEIHIPNGVKDMDFYSAYTSTSSQLTPSN 350

Query: 183  KKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRET 362
            K   + +   +  ++  N  S+  + G+ S  + RG   PLLDLH+DHDADSLPSPTRE 
Sbjct: 351  KLASDSIPFGVKGKNNLNILSEGLQSGV-SSIKGRGPLLPLLDLHKDHDADSLPSPTREA 409

Query: 363  PPTTFPLPKQKITGDGVVKSELATPRVADNTEGVVAHPYETDALKAVSTYQQKFGRTSLF 542
            P T F           V KS  A  ++A   +G  +HPYETDALKAVSTYQQKFGR+S  
Sbjct: 410  P-TIF----------SVQKSGNAPTKMAFPVDGSRSHPYETDALKAVSTYQQKFGRSSFS 458

Query: 543  MNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPF-------------- 680
            M   LPSPTPSEE +                       +  P Q                
Sbjct: 459  MADRLPSPTPSEEHD-GGGDIGGEVSSSSIIRSLKSSNVSKPGQKSNSASNVSTGLFPNM 517

Query: 681  -SSSTSHLNGASSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPV 857
             SSST  L    +V P  +V       N  +K  +KSRDPRLR  N +A   DLN  P  
Sbjct: 518  DSSSTRVLISPLNVAPPSSVS------NPTVKPLAKSRDPRLRIVNSDASGMDLN--PRT 569

Query: 858  AAGPKSEPL---GGQIGSRKNKVVDESVLDGHALKRQRNGMTSSAV-SRDVQMVAGSGGW 1025
             A  +S  +      +  RK K+  E   DG  +KR R G  + AV + DV+ V+GSGGW
Sbjct: 570  MASVQSSSILESAATLHLRKQKMDGEPNTDGPEVKRLRIGSQNLAVAASDVRAVSGSGGW 629

Query: 1026 LEDSNTVQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGS---NERPQ 1196
            LED+        ++ ++E                    +  AT K N  N S   NE   
Sbjct: 630  LEDTMPAGPRLFNRNQME------------------IAEANATEKSNVTNNSGSGNECTP 671

Query: 1197 LIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
             + +++  SLPSLLKDI VNPT+L+ L
Sbjct: 672  TVNNSNDASLPSLLKDIVVNPTMLLNL 698


>ref|XP_007139315.1| hypothetical protein PHAVU_008G019000g [Phaseolus vulgaris]
            gi|561012448|gb|ESW11309.1| hypothetical protein
            PHAVU_008G019000g [Phaseolus vulgaris]
          Length = 1272

 Score =  184 bits (467), Expect = 7e-44
 Identities = 139/438 (31%), Positives = 215/438 (49%), Gaps = 13/438 (2%)
 Frame = +3

Query: 3    FLQKQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQI-------NNRINQNELGVLGEKPG 161
            F  + ++E++  +  +D+  +L   +++  + E Q        N+ +     G+  ++  
Sbjct: 281  FSPEHIKEIQDMMTAIDSVGALGSNEAIYMETELQTPEIKSQENSALEVQTRGIKIQENQ 340

Query: 162  QLFNSSNKKILEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSL 341
             +  +     ++P+   ++  S   +    S +G       RG   PLLDLH+DHDADSL
Sbjct: 341  AVVATELVSSIKPLHSDIIGASRALKFGQNSIKG-------RGVLLPLLDLHKDHDADSL 393

Query: 342  PSPTRETPPTTFPLPKQKITGDGVVKSELATPRVAD-----NTEGVVAHPYETDALKAVS 506
            PSPTRE P + FP+ K    G+ +VKS  A  ++       ++EG   H YETDALKAVS
Sbjct: 394  PSPTREAP-SCFPVNKLLSVGEVMVKSGSAAAKMQPGKLEVDSEGSKFHLYETDALKAVS 452

Query: 507  TYQQKFGRTSLFMNTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSS 686
            TYQQKFGR+SLF N  LPSPTPS +C+                         +  QP  S
Sbjct: 453  TYQQKFGRSSLFTNDKLPSPTPSGDCDDMAVDTNEEVSSASTSGFLTSTKPTLLDQPPVS 512

Query: 687  STSHLNGASSVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAAG 866
            +TS        + +  V   G G +  +K+ +KSRDPR R  N EA + D NQ       
Sbjct: 513  ATSVDKSRLLGLISSRVDAAGSG-SFPVKSSAKSRDPRRRLINSEASAVD-NQFTVTHNM 570

Query: 867  PKSEPLGGQIGSRKNKVVDESVLDGHALKRQRNGMTS-SAVSRDVQMVAGSGGWLEDSNT 1043
            PK E  G  I SRK K V+E   D    KR ++ + +    + +V+ +AGSGGWLED   
Sbjct: 571  PKVEYAGSTI-SRKQKAVEEPSFDLTVSKRLKSSLENIEHNTSEVRTIAGSGGWLEDITG 629

Query: 1044 VQSFATDKRRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVS 1223
              +   +K  +      + +++ +  ++SG      +   N  +  NE+  +  +    S
Sbjct: 630  PGTQLIEKNHLIDKFAPEPKRTLNTVSSSG------SVNFNATSIRNEQAPITSNNVPSS 683

Query: 1224 LPSLLKDIAVNPTVLMQL 1277
            LP++ KDI VNPT+L+ L
Sbjct: 684  LPAIFKDIVVNPTMLLSL 701


>ref|XP_006341905.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like [Solanum tuberosum]
          Length = 1218

 Score =  183 bits (464), Expect = 2e-43
 Identities = 148/430 (34%), Positives = 213/430 (49%), Gaps = 8/430 (1%)
 Frame = +3

Query: 12   KQLQEVEAAIRFLDAKSSLSHIKSLERDKEAQINNRINQNELGVLGEKPGQLFNSSNKKI 191
            +QL+EV+A I  ++  +  S+ +  ++    ++   +++       E   Q F + NK  
Sbjct: 246  EQLKEVDAVILSINQSAVFSNTQDNDKVNGIKVVELLDKKVSHKSSENANQDFTAVNKYD 305

Query: 192  LEPMSVKMVDQSTGNRGSDTSKQGILSGFRSRGAFGPLLDLHRDHDADSLPSPTRETPPT 371
            L  +S+K       +   ++ K G L+  +++G   PLLDLH+DHD D+LPSPTRE  P 
Sbjct: 306  LGAVSIKSSGLKEQSVSFESVKPG-LANSKAKGLSIPLLDLHKDHDEDTLPSPTREIGPQ 364

Query: 372  TFPLPKQKITGDGVVKSELATPRVADNTE--GVVAHPYETDALKAVSTYQQKFGRTSLFM 545
             FP+ K      G+VK +L  P  A + E    + HPYETDALKAVS+YQQKFGR+SLF+
Sbjct: 365  -FPVAKAT-QAHGMVKLDL--PIFAGSLEKGNSLLHPYETDALKAVSSYQQKFGRSSLFV 420

Query: 546  NTDLPSPTPSEECEIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSS---TSHLNGAS- 713
            + +LPSPTPSEE +                            QP  SS   T+ L+G   
Sbjct: 421  SENLPSPTPSEEGDSGKGDIGGEVTSLDVVHNASHLNESSMGQPILSSVPQTNILDGQGL 480

Query: 714  SVVPTKTVGQFGPGLNVNIKAPSKSRDPRLRFANLEAGSFDLNQ--CPPVAAGPKSEPLG 887
                T     F P  ++   + +KSRDPRLR A  +A + + N+   P      K E   
Sbjct: 481  GTARTADPLSFLPNPSLR-SSTAKSRDPRLRLATSDAVAQNTNKNILPIPDIDLKLEASL 539

Query: 888  GQIGSRKNKVVDESVLDGHALKRQRNGMTSSAVSRDVQMVAGSGGWLEDSNTVQSFATDK 1067
              IGS+K K VD  V      KRQR+  T S +  DV+   G+GGWLED  T     T  
Sbjct: 540  EMIGSKKQKTVDLPVFGAPLPKRQRSEQTDSIIVSDVRPSTGNGGWLEDRGTAGLPITSS 599

Query: 1068 RRIEGNLGTDIRQSEDGENTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDI 1247
                 +   DIR+ E    T       AT      N +   P + G +++ +L SLLKDI
Sbjct: 600  NCATDSSDNDIRKLEQVTAT------IATIPSVIVNAAENFP-VTGISTSTTLHSLLKDI 652

Query: 1248 AVNPTVLMQL 1277
            A+NP++ M +
Sbjct: 653  AINPSIWMNI 662


>ref|XP_004492029.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like isoform X2 [Cicer arietinum]
          Length = 1227

 Score =  183 bits (464), Expect = 2e-43
 Identities = 121/352 (34%), Positives = 180/352 (51%), Gaps = 10/352 (2%)
 Frame = +3

Query: 252  SKQGILSG---FRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVKS 422
            + + +LSG    + RG   PL DLH+ HD DSLPSPTRE P + FP+ K    GDG+ + 
Sbjct: 315  ASEALLSGQSNIKGRGVMLPLFDLHKVHDLDSLPSPTREAP-SFFPVNKLFSVGDGMDRP 373

Query: 423  ELATPRVAD------NTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEEC 584
             L +    +      +TE    H YETDALKAVSTYQQKFGR+S F +   PSPTPS +C
Sbjct: 374  GLPSAGKTEAVKMELDTENSKNHLYETDALKAVSTYQQKFGRSSYFTDDKFPSPTPSGDC 433

Query: 585  EIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSVVPTKTVGQFGPGLNV 764
            E                         +   P SS++   +    ++ ++   +    +  
Sbjct: 434  EEGVADANEEVSSASIAVSLTSSKPLLDQMPVSSTSVDRSSMHGLINSRI--EAASSVTY 491

Query: 765  NIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAAGPKSEPLGGQIGSRKNKVVDESVLDGH 944
             +K  ++SRDPRLRF N +A + DLNQ       PK E   G++ SRK K  +E  LD  
Sbjct: 492  PVKTSARSRDPRLRFINSDASALDLNQSLGTNNMPKVEN-AGRVISRKQKTTEELSLDAT 550

Query: 945  ALKRQRNGMTSSA-VSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQSEDGE 1121
            A KR R+ + +S   +R+ + +AG+GGWLE++    S   ++  +           + GE
Sbjct: 551  APKRLRSSLENSRHNTREERTMAGNGGWLEENRVAGSHLIERNHL----------MQKGE 600

Query: 1122 NTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
                +   T++      +  NE+  +  S +  +LP LLK+IAVNPT+L+ +
Sbjct: 601  TELKKTMSTSSGYSTVTSNGNEQAPVTVSNTAAALPGLLKNIAVNPTMLLNI 652


>ref|XP_004492028.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            3-like isoform X1 [Cicer arietinum]
          Length = 1247

 Score =  183 bits (464), Expect = 2e-43
 Identities = 121/352 (34%), Positives = 180/352 (51%), Gaps = 10/352 (2%)
 Frame = +3

Query: 252  SKQGILSG---FRSRGAFGPLLDLHRDHDADSLPSPTRETPPTTFPLPKQKITGDGVVKS 422
            + + +LSG    + RG   PL DLH+ HD DSLPSPTRE P + FP+ K    GDG+ + 
Sbjct: 335  ASEALLSGQSNIKGRGVMLPLFDLHKVHDLDSLPSPTREAP-SFFPVNKLFSVGDGMDRP 393

Query: 423  ELATPRVAD------NTEGVVAHPYETDALKAVSTYQQKFGRTSLFMNTDLPSPTPSEEC 584
             L +    +      +TE    H YETDALKAVSTYQQKFGR+S F +   PSPTPS +C
Sbjct: 394  GLPSAGKTEAVKMELDTENSKNHLYETDALKAVSTYQQKFGRSSYFTDDKFPSPTPSGDC 453

Query: 585  EIXXXXXXXXXXXXXXXXXXXXXXLPVPSQPFSSSTSHLNGASSVVPTKTVGQFGPGLNV 764
            E                         +   P SS++   +    ++ ++   +    +  
Sbjct: 454  EEGVADANEEVSSASIAVSLTSSKPLLDQMPVSSTSVDRSSMHGLINSRI--EAASSVTY 511

Query: 765  NIKAPSKSRDPRLRFANLEAGSFDLNQCPPVAAGPKSEPLGGQIGSRKNKVVDESVLDGH 944
             +K  ++SRDPRLRF N +A + DLNQ       PK E   G++ SRK K  +E  LD  
Sbjct: 512  PVKTSARSRDPRLRFINSDASALDLNQSLGTNNMPKVEN-AGRVISRKQKTTEELSLDAT 570

Query: 945  ALKRQRNGMTSSA-VSRDVQMVAGSGGWLEDSNTVQSFATDKRRIEGNLGTDIRQSEDGE 1121
            A KR R+ + +S   +R+ + +AG+GGWLE++    S   ++  +           + GE
Sbjct: 571  APKRLRSSLENSRHNTREERTMAGNGGWLEENRVAGSHLIERNHL----------MQKGE 620

Query: 1122 NTSGRRKDTATAKLNEANGSNERPQLIGSTSTVSLPSLLKDIAVNPTVLMQL 1277
                +   T++      +  NE+  +  S +  +LP LLK+IAVNPT+L+ +
Sbjct: 621  TELKKTMSTSSGYSTVTSNGNEQAPVTVSNTAAALPGLLKNIAVNPTMLLNI 672