BLASTX nr result
ID: Cocculus22_contig00024574
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00024574
(345 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 61 2e-07
gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simpliciss... 60 2e-07
gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] 60 2e-07
ref|YP_008592629.1| RNA polymerase beta'' subunit (chloroplast) ... 59 7e-07
gb|ABD93767.1| RNA polymerase beta chain [Berberis bealei] 59 7e-07
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic... 59 7e-07
gb|AAZ03982.1| RNA polymerase beta'' chain [Ranunculus macranthus] 59 9e-07
ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis... 59 9e-07
ref|YP_001004176.1| RNA polymerase beta' subunit [Ranunculus mac... 59 9e-07
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]... 58 1e-06
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife... 58 1e-06
gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera] 58 1e-06
gb|ABD93726.1| RNA polymerase beta chain [Ranunculus sp. Qiu 95024] 57 3e-06
gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis] 56 5e-06
gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra] 56 5e-06
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden... 56 5e-06
gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata] 56 6e-06
gb|ADD31155.1| RNA polymerase beta'' subunit protein [Meliosma a... 55 8e-06
gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata] 55 8e-06
gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata] 55 8e-06
>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGV 304
NGKPIR SHKNIQLV CL LNWDQ++ GSSIEGV
Sbjct: 285 NGKPIRGISHKNIQLVRTCLVLNWDQDEKGSSIEGV 320
>gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima]
Length = 861
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/37 (75%), Positives = 30/37 (81%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH NIQLV CL LNWDQ+K+GSSIE VH
Sbjct: 371 NGKPIRGISHTNIQLVRTCLVLNWDQDKNGSSIEEVH 407
>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
Length = 865
Score = 60.5 bits (145), Expect = 2e-07
Identities = 30/39 (76%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSS--IEGVH 307
NGKPIR SHKNIQLV CL LNWDQ+K GSS IEGVH
Sbjct: 371 NGKPIRGISHKNIQLVRTCLVLNWDQDKKGSSIDIEGVH 409
>ref|YP_008592629.1| RNA polymerase beta'' subunit (chloroplast) [Berberis bealei]
gi|536462670|gb|AGU37035.1| RNA polymerase beta''
subunit (chloroplast) [Berberis bealei]
Length = 1380
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH NIQLV CL LNWDQ K+GSS+E VH
Sbjct: 812 NGKPIRGVSHTNIQLVRTCLLLNWDQEKNGSSMEEVH 848
>gb|ABD93767.1| RNA polymerase beta chain [Berberis bealei]
Length = 833
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH NIQLV CL LNWDQ K+GSS+E VH
Sbjct: 340 NGKPIRGVSHTNIQLVRTCLLLNWDQEKNGSSMEEVH 376
>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|114054460|gb|ABI49853.1| RNA polymerase beta''
subunit [Nandina domestica]
Length = 1377
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH NIQLV CL LNWDQ K+GSS+E VH
Sbjct: 812 NGKPIRGISHTNIQLVRTCLVLNWDQEKNGSSMEEVH 848
>gb|AAZ03982.1| RNA polymerase beta'' chain [Ranunculus macranthus]
Length = 1376
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGV 304
NGKPIR+ SH NIQLV CL LNWDQ+K GSSIE V
Sbjct: 819 NGKPIRRISHTNIQLVRTCLVLNWDQDKKGSSIEEV 854
>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
gi|226933872|gb|ACO92005.1| RNA polymerase beta''
subunit [Megaleranthis saniculifolia]
Length = 1383
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH NIQL CL LNWDQ+K GSSIE VH
Sbjct: 814 NGKPIRGISHTNIQLARTCLVLNWDQDKKGSSIEEVH 850
>ref|YP_001004176.1| RNA polymerase beta' subunit [Ranunculus macranthus]
gi|212288348|sp|A1XGM8.1|RPOC2_RANMC RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|85540794|gb|ABC70746.1| RNA polymerase beta'
subunit [Ranunculus macranthus]
Length = 1383
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGV 304
NGKPIR+ SH NIQLV CL LNWDQ+K GSSIE V
Sbjct: 816 NGKPIRRISHTNIQLVRTCLVLNWDQDKKGSSIEEV 851
>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
[Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
Length = 1390
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ+K GSSIE VH
Sbjct: 822 NGKPIRGISHTSIQLVRTCLVLNWDQDKKGSSIEEVH 858
>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
[Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
polymerase beta'' subunit protein [Nelumbo nucifera]
gi|383286787|gb|AFH01437.1| RNA polymerase beta''
subunit (chloroplast) [Nelumbo nucifera]
gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
(chloroplast) [Nelumbo nucifera]
Length = 1390
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ+K GSSIE VH
Sbjct: 822 NGKPIRGISHTSIQLVRTCLVLNWDQDKKGSSIEEVH 858
>gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]
Length = 866
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ+K GSSIE VH
Sbjct: 373 NGKPIRGISHTSIQLVRTCLVLNWDQDKKGSSIEEVH 409
>gb|ABD93726.1| RNA polymerase beta chain [Ranunculus sp. Qiu 95024]
Length = 862
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/36 (75%), Positives = 28/36 (77%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGV 304
NGKPIR SH NIQLV CL LNWDQ+K GSSIE V
Sbjct: 371 NGKPIRGISHTNIQLVRTCLVLNWDQDKKGSSIEEV 406
>gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis]
Length = 863
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH IQLV CL LNWDQ K+GSSI+ VH
Sbjct: 372 NGKPIRGISHTTIQLVRTCLVLNWDQGKNGSSIKEVH 408
>gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
Length = 796
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR H +IQLV CL LNWDQ+K+GSSIE VH
Sbjct: 371 NGKPIRGIYHTSIQLVRTCLVLNWDQDKNGSSIEEVH 407
>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|114054374|gb|ABI49768.1| RNA polymerase beta''
subunit [Platanus occidentalis]
Length = 1387
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH IQLV CL LNWDQ K+GSSI+ VH
Sbjct: 821 NGKPIRGISHTTIQLVRTCLVLNWDQGKNGSSIKEVH 857
>gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]
Length = 861
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ+K+GSS E VH
Sbjct: 371 NGKPIRGISHTSIQLVRTCLVLNWDQDKNGSSREEVH 407
>gb|ADD31155.1| RNA polymerase beta'' subunit protein [Meliosma aff. cuneifolia
Moore 333]
Length = 1377
Score = 55.5 bits (132), Expect = 8e-06
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ+K SSIE VH
Sbjct: 820 NGKPIRGISHTSIQLVRTCLVLNWDQDKKDSSIEEVH 856
>gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
Length = 861
Score = 55.5 bits (132), Expect = 8e-06
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGV 304
NGKPIR SH +IQLV CL LNWDQ+K+GSSIE V
Sbjct: 371 NGKPIRGISHTSIQLVRTCLVLNWDQDKTGSSIEEV 406
>gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]
Length = 861
Score = 55.5 bits (132), Expect = 8e-06
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +2
Query: 197 NGKPIRKTSHKNIQLV*ACLALNWDQNKSGSSIEGVH 307
NGKPIR SH +IQLV CL LNWDQ K+GSS E VH
Sbjct: 371 NGKPIRGISHTSIQLVRTCLVLNWDQEKNGSSREEVH 407