BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00024181
         (1137 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera]   318   e-106
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         323   e-100
gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]     320   e-100
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   320   e-100
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   320   e-100
gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]     320   e-100
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     320   e-100
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     320   e-100
emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]         320   e-100
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]         320   e-100
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   320   e-100
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   320   e-100
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   320   e-100
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   320   e-100
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         320   e-100
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         320   e-100
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   320   e-100
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     320   e-100
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   320   e-100
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc...   320   e-100

>emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera]
          Length = 839

 Score =  318 bits (814), Expect(2) = e-106
 Identities = 169/317 (53%), Positives = 201/317 (63%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPSY YL+V  CL K+ +  PK+VKIGPK +DC+FIGY  N+SAY F V+K  I DIH  
Sbjct: 343  KPSYKYLKVWECLTKVVLQKPKQVKIGPKTIDCIFIGYANNSSAYHFLVHKSSIPDIHED 402

Query: 957  TIMESRNLSFFESTFSYKGHIDSNFNKQTYTDVTATHDQNNNFANEPRRSKRTKIAKSFG 778
            TI+ESRN SFFE+ F  K   + + NK+TY      H        EPR SKR K  KSFG
Sbjct: 403  TIIESRNASFFENIFPCKEKQEVSLNKRTYDTANGNHQNEE----EPRCSKRAKKTKSFG 458

Query: 777  SDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLNLSYNHT*ELVNLPSGMKLLGCTWI 598
             +YL YML+++P+TF+E M                                        I
Sbjct: 459  LEYLTYMLDNEPKTFKEAM----------------------------------------I 478

Query: 597  FQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXXXXXINNLEIHQ 418
            F+KK K DG+I+KYKARL+AKGFKQKE LDFFDTYSPV              ++N EIHQ
Sbjct: 479  FKKKIKPDGTINKYKARLVAKGFKQKEDLDFFDTYSPVTRITSIRVLIAIVALHNFEIHQ 538

Query: 417  MDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKLWHIKFDIVMLS 238
            MDVKT FLNGELEE IYMEQ EGFV PGQE+KVC+LIKSLYGLKQ PK WH KFD VMLS
Sbjct: 539  MDVKTTFLNGELEE-IYMEQSEGFVAPGQEKKVCKLIKSLYGLKQAPKQWHEKFDKVMLS 597

Query: 237  NGYKTNQCDKCIYTKST 187
            N +K N+CDK +YT++T
Sbjct: 598  NDFKINECDKYVYTRNT 614



 Score = 97.4 bits (241), Expect(2) = e-106
 Identities = 50/69 (72%), Positives = 59/69 (85%), Gaps = 2/69 (2%)
 Frame = -3

Query: 205 YLYQIN--NHWVIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISE 32
           Y+Y  N  + +VIVCLYVDDMLIIGSN  +IKATKKML  +FDMKDMG+ADVILGIKI++
Sbjct: 608 YVYTRNTQSEYVIVCLYVDDMLIIGSNNDVIKATKKMLTNYFDMKDMGVADVILGIKIAK 667

Query: 31  TSDGLMLSQ 5
           TS GL+LSQ
Sbjct: 668 TSSGLILSQ 676


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  323 bits (827), Expect(2) = e-100
 Identities = 160/324 (49%), Positives = 215/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPSEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EAI  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAICSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  ++S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLISAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1320

 Score =  320 bits (821), Expect(2) = e-100
 Identities = 160/324 (49%), Positives = 215/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K +I D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKG-HIDSNFNKQTYTDVTATHDQNNN---------FANEPRRS 808
            TIMESR+ +FFES F  K  H  SN   +    +    +Q  +          +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  320 bits (819), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 73.2 bits (178), Expect(2) = e-100
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+NI++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  320 bits (819), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 73.2 bits (178), Expect(2) = e-100
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+NI++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]
          Length = 1297

 Score =  320 bits (821), Expect(2) = e-100
 Identities = 160/324 (49%), Positives = 215/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K +I D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKG-HIDSNFNKQTYTDVTATHDQNNN---------FANEPRRS 808
            TIMESR+ +FFES F  K  H  SN   +    +    +Q  +          +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 1064 KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 1123

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 1124 TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 1183

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 1184 KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 1243

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 1244 YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 1303

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 1304 LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 1363

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 1364 WHEKFDKTLTSAGFAVNEADKCVY 1387



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 1396 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1454


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 739  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 798

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 799  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 858

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 859  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 918

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 919  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 978

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 979  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 1038

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 1039 WHEKFDKTLTSAGFAVNEADKCVY 1062



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 1071 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1129


>emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]
          Length = 1356

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 158/324 (48%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++LD+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N   E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGIWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSP+           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPIARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
          Length = 1342

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 158/324 (48%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++LD+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N   E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGIWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSP+           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPIARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 769

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 770  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 889

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 890  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 949

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 950  WHEKFDKTLTSAGFAVNEADKCVY 973



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 982  VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1040


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  320 bits (820), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 443  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 502

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 503  TIMESRDATFFESFFPMKDTHSGSNQPFEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 562

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 563  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 622

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 623  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 682

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 683  LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 742

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 743  WHEKFDKTLTSAGFAVNEADKCVY 766



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178 VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
           VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 775 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 833


>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2027

 Score =  320 bits (819), Expect(2) = e-100
 Identities = 159/324 (49%), Positives = 214/324 (66%), Gaps = 11/324 (3%)
 Frame = -1

Query: 1137 KPSYNYLRVCGCLAKMAIPDPKKVKIGPKIVDCVFIGYTQNNSAYRFPVYK*DILDIH*S 958
            KPS +YLR  GCLAK+ +P  KK K+GPK VDCVF+GY  ++ AYRF + K ++ D+H  
Sbjct: 845  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 904

Query: 957  TIMESRNLSFFESTFSYKGH----------IDSNFNKQTYTDVTATHDQNNNFANEPRRS 808
            TIMESR+ +FFES F  K            I S+      T+ T       + +  PRRS
Sbjct: 905  TIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRS 964

Query: 807  KRTKIAKSFGSDYLAYMLEDDPQTFQEVMSTLEAPFWQEAIILKLN-LSYNHT*ELVNLP 631
            KR + AKSFG D+  Y+++D P++  E  ++ +A +W+EA+  +++ +  N T E+   P
Sbjct: 965  KRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 1024

Query: 630  SGMKLLGCTWIFQKKFKADGSIDKYKARLIAKGFKQKEGLDFFDTYSPVXXXXXXXXXXX 451
             G K +GC W+F+KK + DG+I+KYKARL+AKG+ QKEG DFFDTYSPV           
Sbjct: 1025 YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLS 1084

Query: 450  XXXINNLEIHQMDVKTAFLNGELEEEIYMEQPEGFVIPGQERKVCRLIKSLYGLKQTPKL 271
                + L +HQMDVKTAFLNGEL+EEIYM+QP+GFV+ GQE KVC+L+KSLYGLKQ PK 
Sbjct: 1085 LAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQ 1144

Query: 270  WHIKFDIVMLSNGYKTNQCDKCIY 199
            WH KFD  + S G+  N+ DKC+Y
Sbjct: 1145 WHEKFDKTLTSAGFGVNEADKCVY 1168



 Score = 72.4 bits (176), Expect(2) = e-100
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 178  VIVCLYVDDMLIIGSNIKMIKATKKMLEQHFDMKDMGIADVILGIKISETSDGLMLSQS 2
            VI+CLYVDD+LI G+N+++I   K  L Q+FDMKD+G+ADVIL IK+    +G+ L QS
Sbjct: 1177 VILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS 1235