BLASTX nr result
ID: Cocculus22_contig00023865
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00023865
(327 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82754.1| retrofit [Oryza longistaminata] 59 6e-13
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 59 8e-13
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 59 8e-13
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 58 2e-12
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 58 2e-12
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera] 56 5e-12
emb|CAN74920.1| hypothetical protein VITISV_022026 [Vitis vinifera] 56 5e-12
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 58 8e-12
emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera] 55 8e-12
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 59 1e-11
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 60 1e-11
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 60 1e-11
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 56 2e-11
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc... 60 2e-11
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera] 54 2e-11
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 56 2e-11
emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera] 53 4e-11
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 56 4e-11
emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera] 52 5e-11
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 57 5e-11
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 59.3 bits (142), Expect(2) = 6e-13
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LR+FGC C+PHLRPYN HKL+FRS C+
Sbjct: 674 PDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCV 706
Score = 40.0 bits (92), Expect(2) = 6e-13
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLG+ST HKG+ C + SGR+YIS
Sbjct: 706 VFLGFSTHHKGFKCLDVSSGRVYIS 730
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 59.3 bits (142), Expect(2) = 8e-13
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LRIFGC C+P+LRPYNNHKL+FRS C+
Sbjct: 701 PDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCV 733
Score = 39.7 bits (91), Expect(2) = 8e-13
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLG+ST HKG+ C + +GR+YIS
Sbjct: 733 VFLGFSTMHKGFKCLEVSTGRIYIS 757
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 59.3 bits (142), Expect(2) = 8e-13
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LRIFGC C+P+LRPYNNHKL+FRS C+
Sbjct: 668 PDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCV 700
Score = 39.7 bits (91), Expect(2) = 8e-13
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLG+ST HKG+ C + +GR+YIS
Sbjct: 700 VFLGFSTMHKGFKCLEVSTGRIYIS 724
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 57.8 bits (138), Expect(2) = 2e-12
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LRIFGC C+P+LRPYN+HKL+FRS C+
Sbjct: 521 PDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCV 553
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYISL-MSSSMNFFVLTTL 213
VFLGYS+ HKG+ C + +GR+Y+S ++ NFF +L
Sbjct: 553 VFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASL 592
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 57.8 bits (138), Expect(2) = 2e-12
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LRIFGC C+P+LRPYN+HKL+FRS C+
Sbjct: 521 PDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCV 553
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYISL-MSSSMNFFVLTTL 213
VFLGYS+ HKG+ C + +GR+Y+S ++ NFF +L
Sbjct: 553 VFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASL 592
>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
Length = 1270
Score = 55.8 bits (133), Expect(2) = 5e-12
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+FGC C+P LRPYN+HKL +RS+ C+
Sbjct: 589 PNYHHLRVFGCLCFPSLRPYNHHKLSYRSTACV 621
Score = 40.4 bits (93), Expect(2) = 5e-12
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGY+++HKGY+C + + RLYIS
Sbjct: 621 VFLGYASAHKGYICLDVSTSRLYIS 645
>emb|CAN74920.1| hypothetical protein VITISV_022026 [Vitis vinifera]
Length = 620
Score = 55.8 bits (133), Expect(2) = 5e-12
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+FGC C+P LRPYN+HKL +RS+ C+
Sbjct: 440 PNYHHLRVFGCLCFPSLRPYNHHKLSYRSTACV 472
Score = 40.4 bits (93), Expect(2) = 5e-12
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGY+++HKGY+C + + RLYIS
Sbjct: 472 VFLGYASAHKGYICLDVSTSRLYIS 496
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 58.2 bits (139), Expect(2) = 8e-12
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P YT LR+ GC C+P+LRPYNNHKL+FRS C+
Sbjct: 355 PDYTSLRVLGCACWPNLRPYNNHKLQFRSKRCV 387
Score = 37.4 bits (85), Expect(2) = 8e-12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLG+S HKG+ C + +GR+YIS
Sbjct: 387 VFLGFSNMHKGFKCLEVSTGRVYIS 411
>emb|CAN77529.1| hypothetical protein VITISV_041425 [Vitis vinifera]
Length = 1047
Score = 54.7 bits (130), Expect(2) = 8e-12
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+FGC C+P LRPYN+HKL +RS C+
Sbjct: 583 PNYHHLRVFGCLCFPSLRPYNHHKLSYRSIACV 615
Score = 40.8 bits (94), Expect(2) = 8e-12
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 85 ALPSVFLGYSTSHKGYLCFHIPSGRLYIS 171
++ VFLGY+++HKGY+C + + RLYIS
Sbjct: 611 SIACVFLGYASAHKGYICLDVSTSRLYIS 639
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 58.9 bits (141), Expect(2) = 1e-11
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 98
P Y+ LR+FGC C+PHLRPYN HKL+FRS C
Sbjct: 674 PDYSSLRVFGCACWPHLRPYNTHKLQFRSKQC 705
Score = 36.2 bits (82), Expect(2) = 1e-11
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 100 FLGYSTSHKGYLCFHIPSGRLYIS 171
FLGYST HKG+ C +GR+YIS
Sbjct: 707 FLGYSTLHKGFKCLDPSTGRVYIS 730
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 59.7 bits (143), Expect(2) = 1e-11
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 98
P+Y+ L++FGC C+PHLRPYN HKL+FRSS C
Sbjct: 535 PNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPC 566
Score = 35.0 bits (79), Expect(2) = 1e-11
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 91 PSVFLGYSTSHKGYLCFHIPSGRLYIS 171
P FLGYS+ HKGY C + GR++IS
Sbjct: 565 PCTFLGYSSKHKGYKCLN-QQGRMFIS 590
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 59.7 bits (143), Expect(2) = 1e-11
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 98
P+Y+ L++FGC C+PHLRPYN HKL+FRSS C
Sbjct: 781 PNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPC 812
Score = 35.0 bits (79), Expect(2) = 1e-11
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 91 PSVFLGYSTSHKGYLCFHIPSGRLYIS 171
P FLGYS+ HKGY C + GR++IS
Sbjct: 811 PCTFLGYSSKHKGYKCLN-QQGRMFIS 836
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 56.2 bits (134), Expect(2) = 2e-11
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LR+FGC+C+P LRPYN+HKL++RS C+
Sbjct: 785 PDYSCLRVFGCSCFPFLRPYNSHKLDYRSQECI 817
Score = 38.1 bits (87), Expect(2) = 2e-11
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
+FLGYST+HKGY C P+G +YIS
Sbjct: 817 IFLGYSTAHKGYKCL-APNGHIYIS 840
>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 59.7 bits (143), Expect(2) = 2e-11
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y+ LR+FGC C+P+LRPYNNHKL+FRS C+
Sbjct: 637 PNYSLLRVFGCACWPNLRPYNNHKLQFRSKQCV 669
Score = 34.7 bits (78), Expect(2) = 2e-11
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFL YS HKG+ C + +GR+YIS
Sbjct: 669 VFLDYSHLHKGFKCLDVSTGRVYIS 693
>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
Length = 1539
Score = 53.5 bits (127), Expect(2) = 2e-11
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+F C C+P LRPYN+HKL +RS+ C+
Sbjct: 865 PNYHHLRVFACLCFPSLRPYNHHKLSYRSTACV 897
Score = 40.4 bits (93), Expect(2) = 2e-11
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGY+++HKGY+C + + RLYIS
Sbjct: 897 VFLGYASAHKGYICLDVSTSRLYIS 921
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 55.8 bits (133), Expect(2) = 2e-11
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
PSYT LR+FGC C+P+LRPYN KL+FRS C+
Sbjct: 665 PSYTSLRVFGCACWPNLRPYNARKLQFRSKQCV 697
Score = 38.1 bits (87), Expect(2) = 2e-11
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGYS HKG+ C + +GR+YIS
Sbjct: 697 VFLGYSNLHKGFKCLDVAAGRVYIS 721
>emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]
Length = 1394
Score = 52.8 bits (125), Expect(2) = 4e-11
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+FGC C+P LRP N+HKL +RS+ C+
Sbjct: 705 PNYHHLRVFGCLCFPSLRPXNHHKLSYRSTACV 737
Score = 40.4 bits (93), Expect(2) = 4e-11
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGY+++HKGY+C + + RLYIS
Sbjct: 737 VFLGYASAHKGYICLDVSTSRLYIS 761
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 56.2 bits (134), Expect(2) = 4e-11
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 98
P Y+ LR+FGC C+P+LRPYN HKL+FRS C
Sbjct: 544 PDYSSLRVFGCACWPNLRPYNKHKLQFRSKRC 575
Score = 37.0 bits (84), Expect(2) = 4e-11
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 100 FLGYSTSHKGYLCFHIPSGRLYIS 171
FLG+S HKG+ C I SGR+YIS
Sbjct: 577 FLGFSNMHKGFKCLDISSGRVYIS 600
>emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]
Length = 1508
Score = 52.4 bits (124), Expect(2) = 5e-11
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P+Y +LR+FGC C+P LRP N+HKL +RS+ C+
Sbjct: 881 PNYHHLRVFGCLCFPSLRPCNHHKLSYRSTACV 913
Score = 40.4 bits (93), Expect(2) = 5e-11
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLGY+++HKGY+C + + RLYIS
Sbjct: 913 VFLGYASAHKGYICLDVSTSRLYIS 937
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 57.0 bits (136), Expect(2) = 5e-11
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 3 PSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 101
P Y+ LR+F CTC+PHL PYN HKL+FRS C+
Sbjct: 677 PDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCV 709
Score = 35.8 bits (81), Expect(2) = 5e-11
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 97 VFLGYSTSHKGYLCFHIPSGRLYIS 171
VFLG+ST HKG+ + SGR+YIS
Sbjct: 709 VFLGFSTHHKGFKFLDVSSGRVYIS 733