BLASTX nr result
ID: Cocculus22_contig00023591
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00023591
(454 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 175 5e-42
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript... 172 4e-41
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 172 4e-41
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 172 4e-41
gb|AAB48348.1| reverse transcriptase, partial [Arabidopsis thali... 172 6e-41
pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3)... 170 2e-40
gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thali... 168 6e-40
ref|XP_004298219.1| PREDICTED: uncharacterized protein LOC101304... 167 2e-39
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 167 2e-39
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 166 4e-39
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 165 5e-39
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 164 9e-39
gb|AAB48347.1| reverse transcriptase, partial [Arabidopsis thali... 164 2e-38
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 163 2e-38
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 163 3e-38
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 163 3e-38
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 163 3e-38
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 162 5e-38
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 162 5e-38
pir||S65819 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N2)... 162 6e-38
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 175 bits (444), Expect = 5e-42
Identities = 84/151 (55%), Positives = 113/151 (74%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N+TH+ LI KI P+ SD RPISLC+ +YK+I K + RLK LP I+S++QSAFV R
Sbjct: 484 NHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQR 543
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LISDNIL+A E++HS++T +K H+A K +MSK YDRVEW FLE +M +GF+ KW+
Sbjct: 544 LISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWIS 603
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
IM CV SV +S L+NG+PYG++I +RG+RQ
Sbjct: 604 WIMNCVTSVSYSVLINGQPYGHIIPTRGIRQ 634
>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 400
Score = 172 bits (436), Expect = 4e-41
Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN T++ LI K + P+ ++FRPISLCN YKVI K +++RLK +LP +IS +QSAFVA
Sbjct: 65 LNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAE 124
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DNILIAQE H+++T P+C K ++AIK +MSK YDRVEWSFL +M++MGF +KWV
Sbjct: 125 RLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWV 184
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
I+ C+ SV + L+NG P G + SRG+RQ
Sbjct: 185 DWIIFCISSVSYKILLNGSPKGFIKPSRGIRQ 216
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 172 bits (436), Expect = 4e-41
Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN T++ LI K + P+ ++FRPISLCN YKVI K +++RLK +LP +IS +QSAFVA
Sbjct: 431 LNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAE 490
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DNILIAQE H+++T P+C K ++AIK +MSK YDRVEWSFL +M++MGF +KWV
Sbjct: 491 RLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWV 550
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
I+ C+ SV + L+NG P G + SRG+RQ
Sbjct: 551 DWIIFCISSVSYKILLNGSPKGFIKPSRGIRQ 582
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 172 bits (436), Expect = 4e-41
Identities = 87/152 (57%), Positives = 113/152 (74%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+N T++ LI KI + +DFRPISLCN IYKVI K +ANRLK ILP +IS +Q+AFV
Sbjct: 484 MNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKG 543
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLISDNILIA EL+H++ + C++ +AIK ++SK YDRVEW FLE M +GF W+
Sbjct: 544 RLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWI 603
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
RLIM+CV+SV + L+NG P+G +I SRGLRQ
Sbjct: 604 RLIMECVKSVRYQVLINGTPHGEIIPSRGLRQ 635
>gb|AAB48348.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 199
Score = 172 bits (435), Expect = 6e-41
Identities = 87/152 (57%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN T++ LI KI P+ ++FRPISLCN YKVI K +++RLK ILP +IS +QSAFVA
Sbjct: 40 LNETNICLIPKIDRPRRMAEFRPISLCNVSYKVISKVLSSRLKKILPDLISETQSAFVAG 99
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DNIL+AQE H+++T P+C K +AIK +MSK Y RVEWSFL +M++MGF +KWV
Sbjct: 100 RLITDNILVAQENFHALRTNPACRKKFMAIKTDMSKAYGRVEWSFLRALMLKMGFAQKWV 159
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
LIM CV SV + L+NG P G + +RG+RQ
Sbjct: 160 DLIMFCVSSVSYKVLLNGAPRGFIKPTRGIRQ 191
>pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3) - Arabidopsis
thaliana retrotransposon Ta25 (fragment)
Length = 184
Score = 170 bits (430), Expect = 2e-40
Identities = 86/151 (56%), Positives = 113/151 (74%), Gaps = 1/151 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN T++ LI KI P+ ++FRPISLCN YKVI K +++RLK ILP +IS +QSAFVA
Sbjct: 34 LNETNICLIPKIDRPRRMAEFRPISLCNVSYKVISKVLSSRLKKILPDLISETQSAFVAG 93
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DNIL+AQE H+++T P+C K +AIK +MSK Y RVEWSFL +M++MGF +KWV
Sbjct: 94 RLITDNILVAQENFHALRTNPACRKKFMAIKTDMSKAYGRVEWSFLRALMLKMGFAQKWV 153
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLR 5
LIM CV SV + L+NG P G + +RG+R
Sbjct: 154 DLIMFCVSSVSYKVLLNGAPRGFIKPTRGIR 184
>gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 199
Score = 168 bits (426), Expect = 6e-40
Identities = 83/152 (54%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+N T + LI KI PK SD+RPISLC A YK+I K + RLK L +IS SQ+AFV
Sbjct: 40 INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 99
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
R ISDN+L+A EL+HS+K++ C +VA+K ++SK YDRVEW+FLE VM+Q+GF +WV
Sbjct: 100 RNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 159
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
+ IM CV SV + L+NG PYG + SRG+RQ
Sbjct: 160 KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQ 191
>ref|XP_004298219.1| PREDICTED: uncharacterized protein LOC101304768 [Fragaria vesca
subsp. vesca]
Length = 1687
Score = 167 bits (422), Expect = 2e-39
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN+T L LI KI+ P+ +DFRPISLCN +YK+I K + NR+K++LP +IS QSAFV
Sbjct: 488 LNHTLLALIPKIENPQGVADFRPISLCNVLYKLISKAMVNRMKVLLPEVISCYQSAFVPG 547
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
R I DN++ A E++HS++ K + + +KL++SK YDRVEW FL +M+++GF +WV
Sbjct: 548 RCIHDNVVTAFEVIHSIRNKQTGTHPYCVLKLDISKAYDRVEWIFLRNIMLKLGFSERWV 607
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
L+MKCVESV FS L NGK G + LSRGLRQ
Sbjct: 608 ELVMKCVESVSFSILWNGKAMGMINLSRGLRQ 639
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 167 bits (422), Expect = 2e-39
Identities = 82/152 (53%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+N T + LI KI PK SD+RPISLC A YK+I K + RLK L +IS SQ+AFV
Sbjct: 846 INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 905
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
+ ISDN+L+A EL+HS+K++ C +VA+K ++SK YDRVEW+FLE VM+Q+GF +WV
Sbjct: 906 QNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 965
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
+ IM CV SV + L+NG PYG + SRG+RQ
Sbjct: 966 KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQ 997
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 166 bits (419), Expect = 4e-39
Identities = 82/152 (53%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+NNT++ LI K+K P ++FRPI+LCN +YK++ K I RLK LP IIS +QSAFV
Sbjct: 488 VNNTNIALIPKVKNPTKAAEFRPIALCNVLYKLMSKAIVMRLKSFLPEIISENQSAFVPG 547
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DN LIA E+ HSMK + K +A+KL+MSK YDRVEW FL +++ MGFD +WV
Sbjct: 548 RLITDNALIAMEVFHSMKNRNRSRKGTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWV 607
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
LIM+ V SV +S ++NG G+V+ +RGLRQ
Sbjct: 608 NLIMEFVSSVTYSFIINGSVCGSVVPARGLRQ 639
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 165 bits (418), Expect = 5e-39
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+N TH+ LI K K + P DFRPISLCN +YK++ K +ANR+K++LP +I SQS FV
Sbjct: 493 VNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPMVIHESQSGFVPG 552
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DN+L+A E H ++ K + K ++ +KL+MSK YDRVEW FLE +M+++GF ++
Sbjct: 553 RLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVEWCFLENMMLKLGFPTRYT 612
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
+L+M CV S FS LVNG+P N SRGLRQ
Sbjct: 613 KLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQ 644
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 164 bits (416), Expect = 9e-39
Identities = 79/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
+N+T++ LI K+K P P++FRPI+LCN +YK++ K + RLK LP ++S +QSAFV
Sbjct: 488 INHTNIALIPKVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQSAFVPG 547
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DN LIA E+ HSMK + K +A+KL+MSK YDRVEW FL +++ MGFD +WV
Sbjct: 548 RLITDNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWV 607
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLR 5
LIM CV SV +S ++NG G+V +RGLR
Sbjct: 608 NLIMSCVSSVSYSFIINGGVCGSVTPARGLR 638
>gb|AAB48347.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 199
Score = 164 bits (414), Expect = 2e-38
Identities = 82/151 (54%), Positives = 108/151 (71%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N THL LI K P D RPISLC+ +YK+I K I RL+ +LP I+S +QSAFV+ R
Sbjct: 41 NFTHLCLIPKTIHPTEMVDLRPISLCSVLYKIISKVIVKRLQPLLPQIVSVNQSAFVSER 100
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LI+DNIL+A ELVHS++T PS + +AIK +MSK YDRVEWSFL +++ +GF ++WV
Sbjct: 101 LITDNILVAHELVHSLRTHPSISSEFMAIKSDMSKAYDRVEWSFLRALLLALGFHQRWVE 160
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
IM CV +V +S L+N +PYG + RGLRQ
Sbjct: 161 WIMTCVSTVTYSVLINDQPYGLITPERGLRQ 191
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 163 bits (413), Expect = 2e-38
Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = -1
Query: 454 LNNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVAN 278
LN+T + LI K++ P+ +FRPISLCN +Y+++ K IANRLK IL HIIS +QSAF+ N
Sbjct: 579 LNHTFIALIPKVEKPRKVMEFRPISLCNVVYRIVAKAIANRLKPILNHIISPNQSAFIPN 638
Query: 277 RLISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWV 98
RLI+DN++I E +H ++ VA+KL++SK YDRVEW+FLE M +GF KW+
Sbjct: 639 RLITDNVIIGYECLHKIRLSKGRRNGLVALKLDISKAYDRVEWNFLEQTMSNLGFSAKWI 698
Query: 97 RLIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
LIM C+ + FS L+NG P G + RGLRQ
Sbjct: 699 SLIMSCITTTCFSVLINGNPVGLIKPERGLRQ 730
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 163 bits (412), Expect = 3e-38
Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N THL LI K + P D RPISLC+ +YK+I K +A RL+ LP I+S +QSAFV+ R
Sbjct: 448 NYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSER 507
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LI+DNIL+A ELVHS+K P + +A+K +MSK YDRVEWS+L +++ +GF KWV
Sbjct: 508 LITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVN 567
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
IM CV SV +S L+N P+G +IL RGLRQ
Sbjct: 568 WIMVCVSSVTYSVLINDCPFGLIILQRGLRQ 598
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 163 bits (412), Expect = 3e-38
Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N THL LI K + P D RPISLC+ +YK+I K +A RL+ LP I+S +QSAFV+ R
Sbjct: 451 NYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSER 510
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LI+DNIL+A ELVHS+K P + +A+K +MSK YDRVEWS+L +++ +GF KWV
Sbjct: 511 LITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVN 570
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
IM CV SV +S L+N P+G +IL RGLRQ
Sbjct: 571 WIMVCVSSVTYSVLINDCPFGLIILQRGLRQ 601
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 163 bits (412), Expect = 3e-38
Identities = 77/151 (50%), Positives = 111/151 (73%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N+THL LI KI P +D RPISLC+ +YK+I K ++ RLK LP I+S +QSAFVA R
Sbjct: 214 NHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAER 273
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
L+SDNI++A E+VH+++T +K+ + K +MSK YDRVEW FL+G+++ +GF+ W+
Sbjct: 274 LVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWIN 333
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
+M CV SV +S L+NG+P+G++ RGLRQ
Sbjct: 334 WMMACVSSVSYSVLINGQPFGHITPHRGLRQ 364
>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1357
Score = 162 bits (410), Expect = 5e-38
Identities = 80/145 (55%), Positives = 104/145 (71%)
Frame = -1
Query: 436 LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANRLISDNI 257
LI K+K P V S+FRPISLCN +YK+ K I RLK LP I + +QSAFV RLISDN
Sbjct: 498 LIPKVKSPTVVSEFRPISLCNVLYKIASKAIVLRLKRFLPCIATENQSAFVPGRLISDNS 557
Query: 256 LIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVRLIMKCV 77
LIA E+ H+MK + + K +A+KL+MSK YDRVEW FL +++ MGFD +WV L+M CV
Sbjct: 558 LIALEIFHTMKKRNNSRKGLMAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLVMSCV 617
Query: 76 ESVLFSCLVNGKPYGNVILSRGLRQ 2
+V +S ++NG+ G+V SRGLRQ
Sbjct: 618 ATVSYSFIINGRVCGSVTPSRGLRQ 642
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 162 bits (410), Expect = 5e-38
Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N+THL LI K P+ SD RPISLC+ +YK+I K ++ +LK LP I+S SQSAF A R
Sbjct: 437 NHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAER 496
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LISDNILIA E+VHS++T +K + K +MSK YDRVEWSFL+ +++ +GF+ KW+
Sbjct: 497 LISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWIS 556
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLRQ 2
IM CV SV +S L+NG+ +G++ RG+RQ
Sbjct: 557 WIMGCVTSVTYSVLINGQHFGHITPERGIRQ 587
>pir||S65819 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N2) - Arabidopsis
thaliana retrotransposon Ta24 (fragment)
Length = 184
Score = 162 bits (409), Expect = 6e-38
Identities = 81/150 (54%), Positives = 107/150 (71%), Gaps = 1/150 (0%)
Frame = -1
Query: 451 NNTHL-LISKIKGPKVPSDFRPISLCNAIYKVIVKGIANRLKLILPHIISSSQSAFVANR 275
N THL LI K P D RPISLC+ +YK+I K I RL+ +LP I+S +QSAFV+ R
Sbjct: 35 NFTHLCLIPKTIHPTEMVDLRPISLCSVLYKIISKVIVKRLQPLLPQIVSVNQSAFVSER 94
Query: 274 LISDNILIAQELVHSMKTKPSCNKNHVAIKLNMSKTYDRVEWSFLEGVMMQMGFDRKWVR 95
LI+DNIL+A ELVHS++T PS + +AIK +MSK YDRVEWSFL +++ +GF ++WV
Sbjct: 95 LITDNILVAHELVHSLRTHPSISSEFMAIKSDMSKAYDRVEWSFLRALLLALGFHQRWVE 154
Query: 94 LIMKCVESVLFSCLVNGKPYGNVILSRGLR 5
IM CV +V +S L+N +PYG + RGLR
Sbjct: 155 WIMTCVSTVTYSVLINDQPYGLITPERGLR 184